RNA–Protein interactions for RNA: ENST00000601849.1

VRK3-224, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 653 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-224ENST00000601849 VSIG10LQ86VR7 867 aa11.11□□□□□ -0.63
VRK3-224ENST00000601849 PLEKHM2Q8IWE5 1019 aa11.11□□□□□ -0.63
VRK3-224ENST00000601849 SAMD11Q96NU1 681 aa11.11□□□□□ -0.63
VRK3-224ENST00000601849 PDCD2LQ9BRP1 358 aa11.11□□□□□ -0.63
VRK3-224ENST00000601849 COL20A1Q9P218 1284 aa11.11□□□□□ -0.63
VRK3-224ENST00000601849 HCN4Q9Y3Q4 1203 aa11.11□□□□□ -0.63
VRK3-224ENST00000601849 SCN10AQ9Y5Y9 1956 aa11.1□□□□□ -0.63
VRK3-224ENST00000601849 LCTP09848 1927 aa11.1□□□□□ -0.63
VRK3-224ENST00000601849 C17orf102A2RUQ5 167 aa11.1□□□□□ -0.63
VRK3-224ENST00000601849 H3BRB1 525 aa11.1□□□□□ -0.63
VRK3-224ENST00000601849 HAS3O00219 553 aa11.1□□□□□ -0.63
VRK3-224ENST00000601849 NBNO60934 754 aa11.1□□□□□ -0.63
VRK3-224ENST00000601849 GGPS1O95749 300 aa11.1□□□□□ -0.63
VRK3-224ENST00000601849 ZNF286BP0CG31 522 aa11.1□□□□□ -0.63
VRK3-224ENST00000601849 THPOP40225 353 aa11.1□□□□□ -0.63
VRK3-224ENST00000601849 ERVK-21P61565 698 aa11.1□□□□□ -0.63
VRK3-224ENST00000601849 NEDD9Q14511 834 aa11.1□□□□□ -0.63
VRK3-224ENST00000601849 ZNF618Q5T7W0 954 aa11.1□□□□□ -0.63
VRK3-224ENST00000601849 HOMER1Q86YM7 354 aa11.1□□□□□ -0.63
VRK3-224ENST00000601849 SEPT8Q92599 483 aa11.1□□□□□ -0.63
VRK3-224ENST00000601849 ATP6V0A1Q93050 837 aa11.1□□□□□ -0.63
VRK3-224ENST00000601849 NECAB3Q96P71 396 aaPredicted RBP11.1□□□□□ -0.63
VRK3-224ENST00000601849 USP26Q9BXU7 913 aa11.1□□□□□ -0.63
VRK3-224ENST00000601849 TUT1Q9H6E5 874 aaKnown RBP11.1□□□□□ -0.63
VRK3-224ENST00000601849 MTUS1Q9ULD2 1270 aa11.1□□□□□ -0.63
VRK3-224ENST00000601849 U3KPZ7 1027 aaPredicted RBP11.1□□□□□ -0.63
VRK3-224ENST00000601849 REV3LO60673 3130 aa11.1□□□□□ -0.63
VRK3-224ENST00000601849 BDP1A6H8Y1 2624 aa11.09□□□□□ -0.63
VRK3-224ENST00000601849 IFIT3O14879 490 aaKnown RBP11.09□□□□□ -0.63
VRK3-224ENST00000601849 CAND2O75155 1236 aa11.09□□□□□ -0.63
VRK3-224ENST00000601849 DEFB103AP81534 67 aa11.09□□□□□ -0.63
VRK3-224ENST00000601849 GHRHRQ02643 423 aa11.09□□□□□ -0.63
VRK3-224ENST00000601849 PGM5Q15124 567 aa11.09□□□□□ -0.63
VRK3-224ENST00000601849 PUS10Q3MIT2 529 aaKnown RBP11.09□□□□□ -0.63
VRK3-224ENST00000601849 HSDL1Q3SXM5 330 aa11.09□□□□□ -0.63
VRK3-224ENST00000601849 FAM117BQ6P1L5 589 aa11.09□□□□□ -0.63
VRK3-224ENST00000601849 RALYLQ86SE5 291 aaKnown RBP11.09□□□□□ -0.63
VRK3-224ENST00000601849 FCHSD1Q86WN1 690 aa11.09□□□□□ -0.63
VRK3-224ENST00000601849 MYOCDQ8IZQ8 938 aa11.09□□□□□ -0.63
VRK3-224ENST00000601849 FBXO22Q8NEZ5 403 aa11.09□□□□□ -0.63
VRK3-224ENST00000601849 DHX38Q92620 1227 aaKnown RBP11.09□□□□□ -0.63
VRK3-224ENST00000601849 CUL5Q93034 780 aa11.09□□□□□ -0.63
VRK3-224ENST00000601849 SUGCTQ9HAC7 445 aa11.09□□□□□ -0.63
VRK3-224ENST00000601849 ZNF215Q9UL58 517 aaPredicted RBP11.09□□□□□ -0.63
VRK3-224ENST00000601849 FAM50BQ9Y247 325 aa11.09□□□□□ -0.63
VRK3-224ENST00000601849 ARIH1Q9Y4X5 557 aaPredicted RBP11.09□□□□□ -0.63
VRK3-224ENST00000601849 SCN5AQ14524 2016 aa11.08□□□□□ -0.64
VRK3-224ENST00000601849 PNMA6FA0A0J9YX94 578 aa11.08□□□□□ -0.64
VRK3-224ENST00000601849 LCHNA4D1U4 455 aa11.08□□□□□ -0.64
VRK3-224ENST00000601849 PALM3A6NDB9 673 aaPredicted RBP11.08□□□□□ -0.64
VRK3-224ENST00000601849 EPOPA6NHQ4 379 aa11.08□□□□□ -0.64
VRK3-224ENST00000601849 HOXD8P13378 290 aaPredicted RBP11.08□□□□□ -0.64
VRK3-224ENST00000601849 HOXA13P31271 388 aaPredicted RBP11.08□□□□□ -0.64
VRK3-224ENST00000601849 PLA2G5P39877 138 aa11.08□□□□□ -0.64
VRK3-224ENST00000601849 WTAPQ15007 396 aa11.08□□□□□ -0.64
VRK3-224ENST00000601849 TMEM31Q5JXX7 168 aa11.08□□□□□ -0.64
VRK3-224ENST00000601849 KRT40Q6A162 431 aa11.08□□□□□ -0.64
VRK3-224ENST00000601849 CATIPQ7Z7H3 387 aa11.08□□□□□ -0.64
VRK3-224ENST00000601849 SERINC5Q86VE9 423 aa11.08□□□□□ -0.64
VRK3-224ENST00000601849 STAG2Q8N3U4 1231 aa11.08□□□□□ -0.64
VRK3-224ENST00000601849 GIMAP8Q8ND71 665 aaPredicted RBP11.08□□□□□ -0.64
VRK3-224ENST00000601849 DBF4BQ8NFT6 615 aa11.08□□□□□ -0.64
VRK3-224ENST00000601849 GDPD5Q8WTR4 605 aa11.08□□□□□ -0.64
VRK3-224ENST00000601849 APBB2Q92870 758 aa11.08□□□□□ -0.64
VRK3-224ENST00000601849 MTMR8Q96EF0 704 aa11.08□□□□□ -0.64
VRK3-224ENST00000601849 CTAGE1Q96RT6 745 aa11.08□□□□□ -0.64
VRK3-224ENST00000601849 YME1L1Q96TA2 773 aa11.08□□□□□ -0.64
VRK3-224ENST00000601849 MAD2L2Q9UI95 211 aa11.08□□□□□ -0.64
VRK3-224ENST00000601849 LINC01553A4QN01 128 aa11.07□□□□□ -0.64
VRK3-224ENST00000601849 SORBS3O60504 671 aa11.07□□□□□ -0.64
VRK3-224ENST00000601849 LPXNO60711 386 aa11.07□□□□□ -0.64
VRK3-224ENST00000601849 GPNMBQ14956 572 aa11.07□□□□□ -0.64
VRK3-224ENST00000601849 XRRA1Q6P2D8 792 aa11.07□□□□□ -0.64
VRK3-224ENST00000601849 TMCO2Q7Z6W1 182 aaPredicted RBP11.07□□□□□ -0.64
VRK3-224ENST00000601849 RSPH3Q86UC2 560 aa11.07□□□□□ -0.64
VRK3-224ENST00000601849 NLRX1Q86UT6 975 aa11.07□□□□□ -0.64
VRK3-224ENST00000601849 NCOA7Q8NI08 942 aa11.07□□□□□ -0.64
VRK3-224ENST00000601849 TNPO1Q92973 898 aaKnown RBP11.07□□□□□ -0.64
VRK3-224ENST00000601849 PIGSQ96S52 555 aa11.07□□□□□ -0.64
VRK3-224ENST00000601849 RIOX1Q9H6W3 641 aa11.07□□□□□ -0.64
VRK3-224ENST00000601849 UBE2ZQ9H832 354 aaPredicted RBP11.07□□□□□ -0.64
VRK3-224ENST00000601849 TANC1Q9C0D5 1861 aa11.06□□□□□ -0.64
VRK3-224ENST00000601849 FIBPO43427 364 aa11.06□□□□□ -0.64
VRK3-224ENST00000601849 NCK2O43639 380 aa11.06□□□□□ -0.64
VRK3-224ENST00000601849 ARHGEF15O94989 841 aa11.06□□□□□ -0.64
VRK3-224ENST00000601849 UPP2O95045 317 aa11.06□□□□□ -0.64
VRK3-224ENST00000601849 SMIM10L2AP0DMW4 78 aa11.06□□□□□ -0.64
VRK3-224ENST00000601849 SMIM10L2BP0DMW5 78 aa11.06□□□□□ -0.64
VRK3-224ENST00000601849 UBA1P22314 1058 aaKnown RBP11.06□□□□□ -0.64
VRK3-224ENST00000601849 KIF5BP33176 963 aa11.06□□□□□ -0.64
VRK3-224ENST00000601849 ZNF200P98182 395 aaPredicted RBP11.06□□□□□ -0.64
VRK3-224ENST00000601849 GRM4Q14833 912 aa11.06□□□□□ -0.64
VRK3-224ENST00000601849 SEC23AQ15436 765 aa11.06□□□□□ -0.64
VRK3-224ENST00000601849 TRIM71Q2Q1W2 868 aaKnown RBP11.06□□□□□ -0.64
VRK3-224ENST00000601849 PLEKHG4Q58EX7 1191 aa11.06□□□□□ -0.64
VRK3-224ENST00000601849 METTL7BQ6UX53 244 aa11.06□□□□□ -0.64
VRK3-224ENST00000601849 LIN28BQ6ZN17 250 aaKnown RBP eCLIP11.06□□□□□ -0.64
VRK3-224ENST00000601849 CTCFLQ8NI51 663 aaPredicted RBP11.06□□□□□ -0.64
VRK3-224ENST00000601849 SMARCC2Q8TAQ2 1214 aa11.06□□□□□ -0.64
VRK3-224ENST00000601849 TOP1MTQ969P6 601 aa11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms