RNA–Protein interactions for RNA: ENST00000600259.5

VRK3-220, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 572 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-220ENST00000600259 IKBKEQ14164 716 aa7.15□□□□□ -1.26
VRK3-220ENST00000600259 MFSD10Q14728 455 aa7.15□□□□□ -1.26
VRK3-220ENST00000600259 CDC37Q16543 378 aaPredicted RBP7.15□□□□□ -1.26
VRK3-220ENST00000600259 KIAA0753Q2KHM9 967 aa7.15□□□□□ -1.26
VRK3-220ENST00000600259 HSDL1Q3SXM5 330 aa7.15□□□□□ -1.26
VRK3-220ENST00000600259 PLEKHG4Q58EX7 1191 aa7.15□□□□□ -1.26
VRK3-220ENST00000600259 STOX1Q6ZVD7 989 aa7.15□□□□□ -1.26
VRK3-220ENST00000600259 SERINC5Q86VE9 423 aa7.15□□□□□ -1.26
VRK3-220ENST00000600259 VSIG10LQ86VR7 867 aa7.15□□□□□ -1.26
VRK3-220ENST00000600259 MCF2L2Q86YR7 1114 aa7.15□□□□□ -1.26
VRK3-220ENST00000600259 CCDC155Q8N6L0 562 aa7.15□□□□□ -1.26
VRK3-220ENST00000600259 ENAHQ8N8S7 591 aaPredicted RBP7.15□□□□□ -1.26
VRK3-220ENST00000600259 PNMA1Q8ND90 353 aa7.15□□□□□ -1.26
VRK3-220ENST00000600259 PPTC7Q8NI37 304 aa7.15□□□□□ -1.26
VRK3-220ENST00000600259 MPHOSPH6Q99547 160 aaKnown RBP7.15□□□□□ -1.26
VRK3-220ENST00000600259 PDCD2LQ9BRP1 358 aa7.15□□□□□ -1.26
VRK3-220ENST00000600259 C17orf80Q9BSJ5 609 aa7.15□□□□□ -1.26
VRK3-220ENST00000600259 ALG1Q9BT22 464 aa7.15□□□□□ -1.26
VRK3-220ENST00000600259 ZBED2Q9BTP6 218 aa7.15□□□□□ -1.26
VRK3-220ENST00000600259 PXMP2Q9NR77 195 aa7.15□□□□□ -1.26
VRK3-220ENST00000600259 ZSWIM5Q9P217 1185 aa7.15□□□□□ -1.26
VRK3-220ENST00000600259 MTUS1Q9ULD2 1270 aa7.15□□□□□ -1.26
VRK3-220ENST00000600259 INSL6Q9Y581 213 aa7.15□□□□□ -1.26
VRK3-220ENST00000600259 CCDC171Q6TFL3 1326 aa7.15□□□□□ -1.26
VRK3-220ENST00000600259 LOC101059915A0A1B0GWI6 518 aaPredicted RBP7.14□□□□□ -1.27
VRK3-220ENST00000600259 C19orf67A6NJJ6 358 aa7.14□□□□□ -1.27
VRK3-220ENST00000600259 KDM4AO75164 1064 aa7.14□□□□□ -1.27
VRK3-220ENST00000600259 LINC00271P0C7V0 271 aa7.14□□□□□ -1.27
VRK3-220ENST00000600259 ZNF286BP0CG31 522 aa7.14□□□□□ -1.27
VRK3-220ENST00000600259 IL9P15248 144 aa7.14□□□□□ -1.27
VRK3-220ENST00000600259 EIF2AK2P19525 551 aaKnown RBP7.14□□□□□ -1.27
VRK3-220ENST00000600259 SDSP20132 328 aa7.14□□□□□ -1.27
VRK3-220ENST00000600259 KCNA5P22460 613 aa7.14□□□□□ -1.27
VRK3-220ENST00000600259 ADAM17P78536 824 aa7.14□□□□□ -1.27
VRK3-220ENST00000600259 HDAC1Q13547 482 aaPredicted RBP7.14□□□□□ -1.27
VRK3-220ENST00000600259 SEC23AQ15436 765 aa7.14□□□□□ -1.27
VRK3-220ENST00000600259 ASPRV1Q53RT3 343 aa7.14□□□□□ -1.27
VRK3-220ENST00000600259 CELF3Q5SZQ8 465 aaKnown RBP7.14□□□□□ -1.27
VRK3-220ENST00000600259 FAM117BQ6P1L5 589 aa7.14□□□□□ -1.27
VRK3-220ENST00000600259 FBXO11Q86XK2 927 aa7.14□□□□□ -1.27
VRK3-220ENST00000600259 DHX37Q8IY37 1157 aaKnown RBP7.14□□□□□ -1.27
VRK3-220ENST00000600259 GJD3Q8N144 294 aa7.14□□□□□ -1.27
VRK3-220ENST00000600259 STAG2Q8N3U4 1231 aa7.14□□□□□ -1.27
VRK3-220ENST00000600259 C7orf31Q8N865 590 aa7.14□□□□□ -1.27
VRK3-220ENST00000600259 IL31RAQ8NI17 732 aa7.14□□□□□ -1.27
VRK3-220ENST00000600259 ESR2Q92731 530 aa7.14□□□□□ -1.27
VRK3-220ENST00000600259 GPKOWQ92917 476 aaPredicted RBP eCLIP7.14□□□□□ -1.27
VRK3-220ENST00000600259 TOP1MTQ969P6 601 aa7.14□□□□□ -1.27
VRK3-220ENST00000600259 MRPL38Q96DV4 380 aaKnown RBP7.14□□□□□ -1.27
VRK3-220ENST00000600259 RNPEPQ9H4A4 650 aa7.14□□□□□ -1.27
VRK3-220ENST00000600259 RNF41Q9H4P4 317 aaPredicted RBP7.14□□□□□ -1.27
VRK3-220ENST00000600259 VAT1LQ9HCJ6 419 aa7.14□□□□□ -1.27
VRK3-220ENST00000600259 MRPL11Q9Y3B7 192 aaKnown RBP7.14□□□□□ -1.27
VRK3-220ENST00000600259 MYO7AQ13402 2215 aa7.13□□□□□ -1.27
VRK3-220ENST00000600259 TANC1Q9C0D5 1861 aa7.13□□□□□ -1.27
VRK3-220ENST00000600259 PRR33A8MZF0 331 aa7.13□□□□□ -1.27
VRK3-220ENST00000600259 RSPH10B2B2RC85 870 aa7.13□□□□□ -1.27
VRK3-220ENST00000600259 B4E1Z4 1266 aa7.13□□□□□ -1.27
VRK3-220ENST00000600259 H3BNC9 293 aa7.13□□□□□ -1.27
VRK3-220ENST00000600259 ZNF213O14771 459 aa7.13□□□□□ -1.27
VRK3-220ENST00000600259 TREHO43280 583 aa7.13□□□□□ -1.27
VRK3-220ENST00000600259 GGPS1O95749 300 aa7.13□□□□□ -1.27
VRK3-220ENST00000600259 CFBP00751 764 aa7.13□□□□□ -1.27
VRK3-220ENST00000600259 RSPH10BP0C881 870 aa7.13□□□□□ -1.27
VRK3-220ENST00000600259 TGFB3P10600 412 aa7.13□□□□□ -1.27
VRK3-220ENST00000600259 LTBRP36941 435 aa7.13□□□□□ -1.27
VRK3-220ENST00000600259 NT5C2P49902 561 aa7.13□□□□□ -1.27
VRK3-220ENST00000600259 SEMA3FQ13275 785 aa7.13□□□□□ -1.27
VRK3-220ENST00000600259 EPC2Q52LR7 807 aa7.13□□□□□ -1.27
VRK3-220ENST00000600259 CCDC178Q5BJE1 867 aa7.13□□□□□ -1.27
VRK3-220ENST00000600259 ARHGEF16Q5VV41 709 aa7.13□□□□□ -1.27
VRK3-220ENST00000600259 PTCRAQ6ISU1 281 aaPredicted RBP7.13□□□□□ -1.27
VRK3-220ENST00000600259 FBXO22Q8NEZ5 403 aa7.13□□□□□ -1.27
VRK3-220ENST00000600259 ZFP91Q96JP5 570 aaPredicted RBP7.13□□□□□ -1.27
VRK3-220ENST00000600259 ZSCAN10Q96SZ4 725 aaPredicted RBP7.13□□□□□ -1.27
VRK3-220ENST00000600259 KATNAL1Q9BW62 490 aa7.13□□□□□ -1.27
VRK3-220ENST00000600259 OSBPL3Q9H4L5 887 aa7.13□□□□□ -1.27
VRK3-220ENST00000600259 MAP3K20Q9NYL2 800 aaKnown RBP7.13□□□□□ -1.27
VRK3-220ENST00000600259 HCN4Q9Y3Q4 1203 aa7.13□□□□□ -1.27
VRK3-220ENST00000600259 TELO2Q9Y4R8 837 aa7.13□□□□□ -1.27
VRK3-220ENST00000600259 MRVI1Q9Y6F6 885 aa7.13□□□□□ -1.27
VRK3-220ENST00000600259 TRIOO75962 3097 aa7.13□□□□□ -1.27
VRK3-220ENST00000600259 EMSYQ7Z589 1322 aa7.12□□□□□ -1.27
VRK3-220ENST00000600259 PALM3A6NDB9 673 aaPredicted RBP7.12□□□□□ -1.27
VRK3-220ENST00000600259 H3BQ06 376 aaPredicted RBP7.12□□□□□ -1.27
VRK3-220ENST00000600259 H3BRB1 525 aa7.12□□□□□ -1.27
VRK3-220ENST00000600259 SORBS3O60504 671 aa7.12□□□□□ -1.27
VRK3-220ENST00000600259 PARP1P09874 1014 aaKnown RBP7.12□□□□□ -1.27
VRK3-220ENST00000600259 UBA1P22314 1058 aaKnown RBP7.12□□□□□ -1.27
VRK3-220ENST00000600259 ICAM3P32942 547 aa7.12□□□□□ -1.27
VRK3-220ENST00000600259 THPOP40225 353 aa7.12□□□□□ -1.27
VRK3-220ENST00000600259 MRPS9P82933 396 aaKnown RBP7.12□□□□□ -1.27
VRK3-220ENST00000600259 PGM5Q15124 567 aa7.12□□□□□ -1.27
VRK3-220ENST00000600259 CTC1Q2NKJ3 1217 aa7.12□□□□□ -1.27
VRK3-220ENST00000600259 TCEAL5Q5H9L2 206 aa7.12□□□□□ -1.27
VRK3-220ENST00000600259 FAM26DQ5JW98 314 aa7.12□□□□□ -1.27
VRK3-220ENST00000600259 KCNV1Q6PIU1 500 aa7.12□□□□□ -1.27
VRK3-220ENST00000600259 CYB5R4Q7L1T6 521 aa7.12□□□□□ -1.27
VRK3-220ENST00000600259 IQCA1Q86XH1 822 aa7.12□□□□□ -1.27
VRK3-220ENST00000600259 PLEKHM2Q8IWE5 1019 aa7.12□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms