RNA–Protein interactions for RNA: ENST00000598309.1

USHBP1-208, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 4

Gene USHBP1, Length 549 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-208ENST00000598309 TYW1BQ6NUM6 668 aa19.13■□□□□ 0.65
USHBP1-208ENST00000598309 KATNAL1Q9BW62 490 aa19.13■□□□□ 0.65
USHBP1-208ENST00000598309 TRPV6Q9H1D0 765 aa19.13■□□□□ 0.65
USHBP1-208ENST00000598309 HIPK3Q9H422 1215 aa19.13■□□□□ 0.65
USHBP1-208ENST00000598309 EHMT1Q9H9B1 1298 aa19.13■□□□□ 0.65
USHBP1-208ENST00000598309 RIC8AQ9NPQ8 531 aa19.13■□□□□ 0.65
USHBP1-208ENST00000598309 PPFIA4O75335 1185 aa19.12■□□□□ 0.65
USHBP1-208ENST00000598309 F2P00734 622 aa19.12■□□□□ 0.65
USHBP1-208ENST00000598309 ADCY7P51828 1080 aa19.12■□□□□ 0.65
USHBP1-208ENST00000598309 SP2Q02086 613 aa19.12■□□□□ 0.65
USHBP1-208ENST00000598309 PPIGQ13427 754 aaKnown RBP eCLIP19.12■□□□□ 0.65
USHBP1-208ENST00000598309 NEDD9Q14511 834 aa19.12■□□□□ 0.65
USHBP1-208ENST00000598309 SHHQ15465 462 aa19.12■□□□□ 0.65
USHBP1-208ENST00000598309 NLRX1Q86UT6 975 aa19.12■□□□□ 0.65
USHBP1-208ENST00000598309 SESTD1Q86VW0 696 aa19.12■□□□□ 0.65
USHBP1-208ENST00000598309 TMEM199Q8N511 208 aa19.12■□□□□ 0.65
USHBP1-208ENST00000598309 KAT2BQ92831 832 aa19.12■□□□□ 0.65
USHBP1-208ENST00000598309 SPATA33Q96N06 139 aa19.12■□□□□ 0.65
USHBP1-208ENST00000598309 NOC4LQ9BVI4 516 aaKnown RBP19.12■□□□□ 0.65
USHBP1-208ENST00000598309 PPP1R12CQ9BZL4 782 aa19.12■□□□□ 0.65
USHBP1-208ENST00000598309 LAMA3Q16787 3333 aa19.12■□□□□ 0.65
USHBP1-208ENST00000598309 PRPF3O43395 683 aaKnown RBP19.11■□□□□ 0.65
USHBP1-208ENST00000598309 FOSP01100 380 aaPredicted RBP19.11■□□□□ 0.65
USHBP1-208ENST00000598309 SCG2P13521 617 aa19.11■□□□□ 0.65
USHBP1-208ENST00000598309 PDIA3P30101 505 aaKnown RBP19.11■□□□□ 0.65
USHBP1-208ENST00000598309 EPHB4P54760 987 aa19.11■□□□□ 0.65
USHBP1-208ENST00000598309 ANAPC15P60006 121 aa19.11■□□□□ 0.65
USHBP1-208ENST00000598309 SEMA3FQ13275 785 aa19.11■□□□□ 0.65
USHBP1-208ENST00000598309 TOB2Q14106 344 aaPredicted RBP19.11■□□□□ 0.65
USHBP1-208ENST00000598309 FAM47CQ5HY64 1035 aa19.11■□□□□ 0.65
USHBP1-208ENST00000598309 C9orf50Q5SZB4 431 aa19.11■□□□□ 0.65
USHBP1-208ENST00000598309 METTL7BQ6UX53 244 aa19.11■□□□□ 0.65
USHBP1-208ENST00000598309 GPRASP2Q96D09 838 aa19.11■□□□□ 0.65
USHBP1-208ENST00000598309 LRCH3Q96II8 777 aa19.11■□□□□ 0.65
USHBP1-208ENST00000598309 ZFP91Q96JP5 570 aaPredicted RBP19.11■□□□□ 0.65
USHBP1-208ENST00000598309 CDHR1Q96JP9 859 aa19.11■□□□□ 0.65
USHBP1-208ENST00000598309 SENP7Q9BQF6 1050 aa19.11■□□□□ 0.65
USHBP1-208ENST00000598309 MLXIPQ9HAP2 919 aa19.11■□□□□ 0.65
USHBP1-208ENST00000598309 TRMT13Q9NUP7 481 aaKnown RBP19.11■□□□□ 0.65
USHBP1-208ENST00000598309 RTEL1Q9NZ71 1219 aa19.11■□□□□ 0.65
USHBP1-208ENST00000598309 PCDHA6Q9UN73 950 aa19.11■□□□□ 0.65
USHBP1-208ENST00000598309 PCDHA8Q9Y5H6 950 aa19.11■□□□□ 0.65
USHBP1-208ENST00000598309 ESYT2A0FGR8 921 aa19.1■□□□□ 0.65
USHBP1-208ENST00000598309 AP3B2Q13367 1082 aa19.1■□□□□ 0.65
USHBP1-208ENST00000598309 NTRK3Q16288 839 aa19.1■□□□□ 0.65
USHBP1-208ENST00000598309 HSDL1Q3SXM5 330 aa19.1■□□□□ 0.65
USHBP1-208ENST00000598309 CCDC12Q8WUD4 166 aaPredicted RBP19.1■□□□□ 0.65
USHBP1-208ENST00000598309 RNF26Q9BY78 433 aaPredicted RBP19.1■□□□□ 0.65
USHBP1-208ENST00000598309 UPF3BQ9BZI7 483 aaKnown RBP19.1■□□□□ 0.65
USHBP1-208ENST00000598309 SMCO2A6NFE2 343 aa19.09■□□□□ 0.65
USHBP1-208ENST00000598309 HAS3O00219 553 aa19.09■□□□□ 0.65
USHBP1-208ENST00000598309 IFNAR1P17181 557 aa19.09■□□□□ 0.65
USHBP1-208ENST00000598309 CYP2C18P33260 490 aa19.09■□□□□ 0.65
USHBP1-208ENST00000598309 GIMAP8Q8ND71 665 aaPredicted RBP19.09■□□□□ 0.65
USHBP1-208ENST00000598309 IL17RAQ96F46 866 aa19.09■□□□□ 0.65
USHBP1-208ENST00000598309 ZNF274Q96GC6 653 aaPredicted RBP19.09■□□□□ 0.65
USHBP1-208ENST00000598309 RNPC3Q96LT9 517 aaKnown RBP19.09■□□□□ 0.65
USHBP1-208ENST00000598309 UBIAD1Q9Y5Z9 338 aa19.09■□□□□ 0.65
USHBP1-208ENST00000598309 NOP56O00567 594 aaKnown RBP19.08■□□□□ 0.64
USHBP1-208ENST00000598309 ZNF286BP0CG31 522 aa19.08■□□□□ 0.64
USHBP1-208ENST00000598309 CSF2RAP15509 400 aa19.08■□□□□ 0.64
USHBP1-208ENST00000598309 ITGB5P18084 799 aa19.08■□□□□ 0.64
USHBP1-208ENST00000598309 PSEN2P49810 448 aa19.08■□□□□ 0.64
USHBP1-208ENST00000598309 AKAP17AQ02040 695 aaKnown RBP19.08■□□□□ 0.64
USHBP1-208ENST00000598309 MFSD10Q14728 455 aa19.08■□□□□ 0.64
USHBP1-208ENST00000598309 PKN1Q16512 942 aa19.08■□□□□ 0.64
USHBP1-208ENST00000598309 PSRC1Q6PGN9 363 aaPredicted RBP19.08■□□□□ 0.64
USHBP1-208ENST00000598309 ANO3Q9BYT9 981 aa19.08■□□□□ 0.64
USHBP1-208ENST00000598309 ZMYND12Q9H0C1 365 aa19.08■□□□□ 0.64
USHBP1-208ENST00000598309 WNT8AQ9H1J5 351 aa19.08■□□□□ 0.64
USHBP1-208ENST00000598309 PDRG1Q9NUG6 133 aa19.08■□□□□ 0.64
USHBP1-208ENST00000598309 UMODL1Q5DID0 1318 aa19.07■□□□□ 0.64
USHBP1-208ENST00000598309 PITPNM1O00562 1244 aa19.07■□□□□ 0.64
USHBP1-208ENST00000598309 MAFGO15525 162 aa19.07■□□□□ 0.64
USHBP1-208ENST00000598309 CYP2C9P11712 490 aa19.07■□□□□ 0.64
USHBP1-208ENST00000598309 CLK2P49760 499 aaKnown RBP19.07■□□□□ 0.64
USHBP1-208ENST00000598309 KIAA0753Q2KHM9 967 aa19.07■□□□□ 0.64
USHBP1-208ENST00000598309 MCTP2Q6DN12 878 aa19.07■□□□□ 0.64
USHBP1-208ENST00000598309 CYFIP1Q7L576 1253 aa19.07■□□□□ 0.64
USHBP1-208ENST00000598309 PHKBQ93100 1093 aa19.07■□□□□ 0.64
USHBP1-208ENST00000598309 C16orf70Q9BSU1 422 aa19.07■□□□□ 0.64
USHBP1-208ENST00000598309 IL23AQ9NPF7 189 aa19.07■□□□□ 0.64
USHBP1-208ENST00000598309 JADE2Q9NQC1 790 aa19.07■□□□□ 0.64
USHBP1-208ENST00000598309 GTF2IRD1Q9UHL9 959 aa19.07■□□□□ 0.64
USHBP1-208ENST00000598309 NOD1Q9Y239 953 aa19.07■□□□□ 0.64
USHBP1-208ENST00000598309 SORBS3O60504 671 aa19.06■□□□□ 0.64
USHBP1-208ENST00000598309 LGALS2P05162 132 aa19.06■□□□□ 0.64
USHBP1-208ENST00000598309 KCNA2P16389 499 aa19.06■□□□□ 0.64
USHBP1-208ENST00000598309 SREBF1P36956 1147 aa19.06■□□□□ 0.64
USHBP1-208ENST00000598309 CHMP4BP1P59074 171 aa19.06■□□□□ 0.64
USHBP1-208ENST00000598309 CCT2P78371 535 aaKnown RBP19.06■□□□□ 0.64
USHBP1-208ENST00000598309 BFSP2Q13515 415 aa19.06■□□□□ 0.64
USHBP1-208ENST00000598309 MTMR1Q13613 665 aa19.06■□□□□ 0.64
USHBP1-208ENST00000598309 PTGISQ16647 500 aa19.06■□□□□ 0.64
USHBP1-208ENST00000598309 C7orf31Q8N865 590 aa19.06■□□□□ 0.64
USHBP1-208ENST00000598309 CCDC148Q8NFR7 591 aa19.06■□□□□ 0.64
USHBP1-208ENST00000598309 GPR20Q99678 358 aa19.06■□□□□ 0.64
USHBP1-208ENST00000598309 BUD13Q9BRD0 619 aaKnown RBP eCLIP19.06■□□□□ 0.64
USHBP1-208ENST00000598309 SLC26A6Q9BXS9 759 aa19.06■□□□□ 0.64
USHBP1-208ENST00000598309 NCOA5Q9HCD5 579 aaKnown RBP19.06■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms