RNA–Protein interactions for RNA: ENST00000597649.5

SHKBP1-215, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 781 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-215ENST00000597649 MCF2L2Q86YR7 1114 aa19.2■□□□□ 0.66
SHKBP1-215ENST00000597649 PPTC7Q8NI37 304 aa19.2■□□□□ 0.66
SHKBP1-215ENST00000597649 GADD45GIP1Q8TAE8 222 aaPredicted RBP19.2■□□□□ 0.66
SHKBP1-215ENST00000597649 C17orf80Q9BSJ5 609 aa19.2■□□□□ 0.66
SHKBP1-215ENST00000597649 RNF41Q9H4P4 317 aaPredicted RBP19.2■□□□□ 0.66
SHKBP1-215ENST00000597649 PXMP2Q9NR77 195 aa19.2■□□□□ 0.66
SHKBP1-215ENST00000597649 COL4A4P53420 1690 aaPredicted RBP19.2■□□□□ 0.66
SHKBP1-215ENST00000597649 SORBS3O60504 671 aa19.19■□□□□ 0.66
SHKBP1-215ENST00000597649 KDM4AO75164 1064 aa19.19■□□□□ 0.66
SHKBP1-215ENST00000597649 HOXD8P13378 290 aaPredicted RBP19.19■□□□□ 0.66
SHKBP1-215ENST00000597649 FBXO11Q86XK2 927 aa19.19■□□□□ 0.66
SHKBP1-215ENST00000597649 DHX37Q8IY37 1157 aaKnown RBP19.19■□□□□ 0.66
SHKBP1-215ENST00000597649 ENAHQ8N8S7 591 aaPredicted RBP19.19■□□□□ 0.66
SHKBP1-215ENST00000597649 MRPL11Q9Y3B7 192 aaKnown RBP19.19■□□□□ 0.66
SHKBP1-215ENST00000597649 HCN4Q9Y3Q4 1203 aa19.19■□□□□ 0.66
SHKBP1-215ENST00000597649 MRVI1Q9Y6F6 885 aa19.19■□□□□ 0.66
SHKBP1-215ENST00000597649 WDFY4Q6ZS81 3184 aa19.19■□□□□ 0.66
SHKBP1-215ENST00000597649 ZNF213O14771 459 aa19.18■□□□□ 0.66
SHKBP1-215ENST00000597649 LGR5O75473 907 aa19.18■□□□□ 0.66
SHKBP1-215ENST00000597649 SP2Q02086 613 aa19.18■□□□□ 0.66
SHKBP1-215ENST00000597649 NUCB1Q02818 461 aa19.18■□□□□ 0.66
SHKBP1-215ENST00000597649 HSDL1Q3SXM5 330 aa19.18■□□□□ 0.66
SHKBP1-215ENST00000597649 LEXMQ3ZCV2 418 aa19.18■□□□□ 0.66
SHKBP1-215ENST00000597649 ASPRV1Q53RT3 343 aa19.18■□□□□ 0.66
SHKBP1-215ENST00000597649 MYSM1Q5VVJ2 828 aa19.18■□□□□ 0.66
SHKBP1-215ENST00000597649 CHD1LQ86WJ1 897 aa19.18■□□□□ 0.66
SHKBP1-215ENST00000597649 FAM178BQ8IXR5 827 aa19.18■□□□□ 0.66
SHKBP1-215ENST00000597649 DBF4BQ8NFT6 615 aa19.18■□□□□ 0.66
SHKBP1-215ENST00000597649 KATNAL1Q9BW62 490 aa19.18■□□□□ 0.66
SHKBP1-215ENST00000597649 OSBPL7Q9BZF2 842 aa19.18■□□□□ 0.66
SHKBP1-215ENST00000597649 LNPKQ9C0E8 428 aa19.18■□□□□ 0.66
SHKBP1-215ENST00000597649 KAT14Q9H8E8 782 aa19.18■□□□□ 0.66
SHKBP1-215ENST00000597649 ZSWIM5Q9P217 1185 aa19.18■□□□□ 0.66
SHKBP1-215ENST00000597649 TRIM6-TRIM34B2RNG4 842 aa19.17■□□□□ 0.66
SHKBP1-215ENST00000597649 B4E1Z4 1266 aa19.17■□□□□ 0.66
SHKBP1-215ENST00000597649 PPP1R11O60927 126 aaPredicted RBP19.17■□□□□ 0.66
SHKBP1-215ENST00000597649 EFCAB14O75071 495 aa19.17■□□□□ 0.66
SHKBP1-215ENST00000597649 PPFIA4O75335 1185 aa19.17■□□□□ 0.66
SHKBP1-215ENST00000597649 CFBP00751 764 aa19.17■□□□□ 0.66
SHKBP1-215ENST00000597649 SDSP20132 328 aa19.17■□□□□ 0.66
SHKBP1-215ENST00000597649 KCNA5P22460 613 aa19.17■□□□□ 0.66
SHKBP1-215ENST00000597649 HSD17B4P51659 736 aa19.17■□□□□ 0.66
SHKBP1-215ENST00000597649 STAG2Q8N3U4 1231 aa19.17■□□□□ 0.66
SHKBP1-215ENST00000597649 RILPL2Q969X0 211 aa19.17■□□□□ 0.66
SHKBP1-215ENST00000597649 ZSCAN10Q96SZ4 725 aaPredicted RBP19.17■□□□□ 0.66
SHKBP1-215ENST00000597649 BCAS3Q9H6U6 928 aa19.17■□□□□ 0.66
SHKBP1-215ENST00000597649 INSL6Q9Y581 213 aa19.17■□□□□ 0.66
SHKBP1-215ENST00000597649 KIAA1217Q5T5P2 1943 aa19.17■□□□□ 0.66
SHKBP1-215ENST00000597649 C5orf42Q9H799 3197 aa19.17■□□□□ 0.66
SHKBP1-215ENST00000597649 HTRA4P83105 476 aaPredicted RBP19.16■□□□□ 0.66
SHKBP1-215ENST00000597649 GHRHRQ02643 423 aa19.16■□□□□ 0.66
SHKBP1-215ENST00000597649 CELF3Q5SZQ8 465 aaKnown RBP19.16■□□□□ 0.66
SHKBP1-215ENST00000597649 SERINC5Q86VE9 423 aa19.16■□□□□ 0.66
SHKBP1-215ENST00000597649 IQCA1Q86XH1 822 aa19.16■□□□□ 0.66
SHKBP1-215ENST00000597649 GJD3Q8N144 294 aa19.16■□□□□ 0.66
SHKBP1-215ENST00000597649 IL31RAQ8NI17 732 aa19.16■□□□□ 0.66
SHKBP1-215ENST00000597649 GPKOWQ92917 476 aaPredicted RBP eCLIP19.16■□□□□ 0.66
SHKBP1-215ENST00000597649 ZFP91Q96JP5 570 aaPredicted RBP19.16■□□□□ 0.66
SHKBP1-215ENST00000597649 PDCD2LQ9BRP1 358 aa19.16■□□□□ 0.66
SHKBP1-215ENST00000597649 C16orf70Q9BSU1 422 aa19.16■□□□□ 0.66
SHKBP1-215ENST00000597649 MYO7AQ13402 2215 aa19.16■□□□□ 0.66
SHKBP1-215ENST00000597649 PARP1P09874 1014 aaKnown RBP19.15■□□□□ 0.66
SHKBP1-215ENST00000597649 MYCLP12524 364 aaPredicted RBP19.15■□□□□ 0.66
SHKBP1-215ENST00000597649 IL9P15248 144 aa19.15■□□□□ 0.66
SHKBP1-215ENST00000597649 THPOP40225 353 aa19.15■□□□□ 0.66
SHKBP1-215ENST00000597649 CCDC178Q5BJE1 867 aa19.15■□□□□ 0.66
SHKBP1-215ENST00000597649 STOX1Q6ZVD7 989 aa19.15■□□□□ 0.66
SHKBP1-215ENST00000597649 VSIG10LQ86VR7 867 aa19.15■□□□□ 0.66
SHKBP1-215ENST00000597649 MYOCDQ8IZQ8 938 aa19.15■□□□□ 0.66
SHKBP1-215ENST00000597649 FBXO22Q8NEZ5 403 aa19.15■□□□□ 0.66
SHKBP1-215ENST00000597649 SP7Q8TDD2 431 aaPredicted RBP19.15■□□□□ 0.66
SHKBP1-215ENST00000597649 SPATA33Q96N06 139 aa19.15■□□□□ 0.66
SHKBP1-215ENST00000597649 RSPH10B2B2RC85 870 aa19.14■□□□□ 0.65
SHKBP1-215ENST00000597649 DHX16O60231 1041 aaKnown RBP19.14■□□□□ 0.65
SHKBP1-215ENST00000597649 GGPS1O95749 300 aa19.14■□□□□ 0.65
SHKBP1-215ENST00000597649 RSPH10BP0C881 870 aa19.14■□□□□ 0.65
SHKBP1-215ENST00000597649 HOXA13P31271 388 aaPredicted RBP19.14■□□□□ 0.65
SHKBP1-215ENST00000597649 SLC35G1Q2M3R5 365 aa19.14■□□□□ 0.65
SHKBP1-215ENST00000597649 PLEKHG4Q58EX7 1191 aa19.14■□□□□ 0.65
SHKBP1-215ENST00000597649 MTMR8Q96EF0 704 aa19.14■□□□□ 0.65
SHKBP1-215ENST00000597649 GRXCR2A6NFK2 248 aa19.13■□□□□ 0.65
SHKBP1-215ENST00000597649 AMHP03971 560 aa19.13■□□□□ 0.65
SHKBP1-215ENST00000597649 HOXC8P31273 242 aa19.13■□□□□ 0.65
SHKBP1-215ENST00000597649 MFAP1P55081 439 aaKnown RBP19.13■□□□□ 0.65
SHKBP1-215ENST00000597649 EPC2Q52LR7 807 aa19.13■□□□□ 0.65
SHKBP1-215ENST00000597649 PTCRAQ6ISU1 281 aaPredicted RBP19.13■□□□□ 0.65
SHKBP1-215ENST00000597649 NEK9Q8TD19 979 aa19.13■□□□□ 0.65
SHKBP1-215ENST00000597649 MRPL38Q96DV4 380 aaKnown RBP19.13■□□□□ 0.65
SHKBP1-215ENST00000597649 AMNQ9BXJ7 453 aa19.13■□□□□ 0.65
SHKBP1-215ENST00000597649 MYH7BA7E2Y1 1941 aa19.13■□□□□ 0.65
SHKBP1-215ENST00000597649 EMSYQ7Z589 1322 aa19.12■□□□□ 0.65
SHKBP1-215ENST00000597649 TREHO43280 583 aa19.12■□□□□ 0.65
SHKBP1-215ENST00000597649 UBA1P22314 1058 aaKnown RBP19.12■□□□□ 0.65
SHKBP1-215ENST00000597649 PGM5Q15124 567 aa19.12■□□□□ 0.65
SHKBP1-215ENST00000597649 CWC27Q6UX04 472 aaKnown RBP19.12■□□□□ 0.65
SHKBP1-215ENST00000597649 TOP1MTQ969P6 601 aa19.12■□□□□ 0.65
SHKBP1-215ENST00000597649 LOC101059915A0A1B0GWI6 518 aaPredicted RBP19.11■□□□□ 0.65
SHKBP1-215ENST00000597649 KLRF2D3W0D1 207 aa19.11■□□□□ 0.65
SHKBP1-215ENST00000597649 H3BQ06 376 aaPredicted RBP19.11■□□□□ 0.65
SHKBP1-215ENST00000597649 NT5C2P49902 561 aa19.11■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 9 ms