RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 FAM153CQ494X1 144 aa16.84■□□□□ 0.29
UPF1-204ENST00000596842 SBK1Q52WX2 424 aa16.84■□□□□ 0.29
UPF1-204ENST00000596842 RNF187Q5TA31 235 aaPredicted RBP16.84■□□□□ 0.29
UPF1-204ENST00000596842 CCDC84Q86UT8 332 aaPredicted RBP16.84■□□□□ 0.29
UPF1-204ENST00000596842 PACSIN1Q9BY11 444 aa16.84■□□□□ 0.29
UPF1-204ENST00000596842 FAM153AQ9UHL3 310 aa16.84■□□□□ 0.29
UPF1-204ENST00000596842 TCP1P17987 556 aaKnown RBP16.84■□□□□ 0.29
UPF1-204ENST00000596842 CEP57Q86XR8 500 aa16.84■□□□□ 0.29
UPF1-204ENST00000596842 AK8Q96MA6 479 aa16.84■□□□□ 0.29
UPF1-204ENST00000596842 ERGIC2Q96RQ1 377 aa16.84■□□□□ 0.29
UPF1-204ENST00000596842 C7orf25Q9BPX7 421 aa16.84■□□□□ 0.29
UPF1-204ENST00000596842 E9PMD0 336 aa16.83■□□□□ 0.29
UPF1-204ENST00000596842 GLI1P08151 1106 aa16.83■□□□□ 0.29
UPF1-204ENST00000596842 CCDC172P0C7W6 258 aa16.83■□□□□ 0.29
UPF1-204ENST00000596842 SLC9C1Q4G0N8 1177 aa16.83■□□□□ 0.29
UPF1-204ENST00000596842 ZMYND12Q9H0C1 365 aa16.83■□□□□ 0.29
UPF1-204ENST00000596842 BLOC1S4Q9NUP1 217 aa16.83■□□□□ 0.29
UPF1-204ENST00000596842 GEMIN8Q9NWZ8 242 aaKnown RBP16.83■□□□□ 0.29
UPF1-204ENST00000596842 STRCP1A6NGW2 1772 aa16.83■□□□□ 0.29
UPF1-204ENST00000596842 PALM3A6NDB9 673 aaPredicted RBP16.83■□□□□ 0.28
UPF1-204ENST00000596842 CFAP221Q4G0U5 840 aa16.83■□□□□ 0.28
UPF1-204ENST00000596842 DCAF17Q5H9S7 520 aaPredicted RBP16.83■□□□□ 0.28
UPF1-204ENST00000596842 SFMBT2Q5VUG0 894 aa16.83■□□□□ 0.28
UPF1-204ENST00000596842 LRCH2Q5VUJ6 765 aa16.83■□□□□ 0.28
UPF1-204ENST00000596842 BMP2KQ9NSY1 1161 aaPredicted RBP16.83■□□□□ 0.28
UPF1-204ENST00000596842 OPA1O60313 960 aa16.83■□□□□ 0.28
UPF1-204ENST00000596842 GUCY1A3Q02108 690 aa16.83■□□□□ 0.28
UPF1-204ENST00000596842 HAUS3Q68CZ6 603 aa16.83■□□□□ 0.28
UPF1-204ENST00000596842 MYOCDQ8IZQ8 938 aa16.83■□□□□ 0.28
UPF1-204ENST00000596842 FGFBP2Q9BYJ0 223 aa16.83■□□□□ 0.28
UPF1-204ENST00000596842 RAB34Q9BZG1 259 aa16.83■□□□□ 0.28
UPF1-204ENST00000596842 KIAA1024Q9UPX6 916 aa16.83■□□□□ 0.28
UPF1-204ENST00000596842 UTP18Q9Y5J1 556 aaKnown RBP eCLIP16.83■□□□□ 0.28
UPF1-204ENST00000596842 LAD1O00515 517 aa16.82■□□□□ 0.28
UPF1-204ENST00000596842 KCNK3O14649 394 aa16.82■□□□□ 0.28
UPF1-204ENST00000596842 RIMBP2O15034 1052 aa16.82■□□□□ 0.28
UPF1-204ENST00000596842 ATP2C2O75185 946 aa16.82■□□□□ 0.28
UPF1-204ENST00000596842 FGFR1OPO95684 399 aaKnown RBP16.82■□□□□ 0.28
UPF1-204ENST00000596842 MYL1P05976 194 aa16.82■□□□□ 0.28
UPF1-204ENST00000596842 AARSP49588 968 aaKnown RBP eCLIP16.82■□□□□ 0.28
UPF1-204ENST00000596842 ADCY7P51828 1080 aa16.82■□□□□ 0.28
UPF1-204ENST00000596842 KLHL30Q0D2K2 578 aa16.82■□□□□ 0.28
UPF1-204ENST00000596842 NNTQ13423 1086 aa16.82■□□□□ 0.28
UPF1-204ENST00000596842 PPM1EQ8WY54 764 aa16.82■□□□□ 0.28
UPF1-204ENST00000596842 ZIM3Q96PE6 472 aa16.82■□□□□ 0.28
UPF1-204ENST00000596842 SPAG5Q96R06 1193 aa16.82■□□□□ 0.28
UPF1-204ENST00000596842 TRIM31Q9BZY9 425 aa16.82■□□□□ 0.28
UPF1-204ENST00000596842 FAM169AQ9Y6X4 670 aa16.82■□□□□ 0.28
UPF1-204ENST00000596842 C6orf229H3BNL8 230 aa16.82■□□□□ 0.28
UPF1-204ENST00000596842 BACH1O14867 736 aa16.82■□□□□ 0.28
UPF1-204ENST00000596842 UFL1O94874 794 aa16.82■□□□□ 0.28
UPF1-204ENST00000596842 KLRC1P26715 233 aa16.82■□□□□ 0.28
UPF1-204ENST00000596842 ODF2Q5BJF6 829 aa16.82■□□□□ 0.28
UPF1-204ENST00000596842 KCTD1Q719H9 257 aa16.82■□□□□ 0.28
UPF1-204ENST00000596842 WDR66Q8TBY9 1149 aa16.82■□□□□ 0.28
UPF1-204ENST00000596842 TAF4BQ92750 862 aa16.82■□□□□ 0.28
UPF1-204ENST00000596842 TLR10Q9BXR5 811 aa16.82■□□□□ 0.28
UPF1-204ENST00000596842 PANK4Q9NVE7 773 aa16.82■□□□□ 0.28
UPF1-204ENST00000596842 M0R2N6 131 aa16.82■□□□□ 0.28
UPF1-204ENST00000596842 ACTN1P12814 892 aa16.82■□□□□ 0.28
UPF1-204ENST00000596842 PPFIA1Q13136 1202 aa16.82■□□□□ 0.28
UPF1-204ENST00000596842 FAM83BQ5T0W9 1011 aa16.82■□□□□ 0.28
UPF1-204ENST00000596842 MEX3CQ5U5Q3 659 aaKnown RBP16.82■□□□□ 0.28
UPF1-204ENST00000596842 FBXW10Q5XX13 1052 aa16.82■□□□□ 0.28
UPF1-204ENST00000596842 TTBK2Q6IQ55 1244 aa16.82■□□□□ 0.28
UPF1-204ENST00000596842 UNC13DQ70J99 1090 aa16.82■□□□□ 0.28
UPF1-204ENST00000596842 ADAT2Q7Z6V5 191 aaKnown RBP16.82■□□□□ 0.28
UPF1-204ENST00000596842 AP1M1Q9BXS5 423 aa16.82■□□□□ 0.28
UPF1-204ENST00000596842 CUEDC2Q9H467 287 aa16.82■□□□□ 0.28
UPF1-204ENST00000596842 SIK3Q9Y2K2 1263 aa16.82■□□□□ 0.28
UPF1-204ENST00000596842 TIAM2Q8IVF5 1701 aa16.82■□□□□ 0.28
UPF1-204ENST00000596842 MEIS1O00470 390 aa16.81■□□□□ 0.28
UPF1-204ENST00000596842 EPHB4P54760 987 aa16.81■□□□□ 0.28
UPF1-204ENST00000596842 BIRC2Q13490 618 aa16.81■□□□□ 0.28
UPF1-204ENST00000596842 CENPPQ6IPU0 288 aa16.81■□□□□ 0.28
UPF1-204ENST00000596842 AENQ8WTP8 325 aaKnown RBP16.81■□□□□ 0.28
UPF1-204ENST00000596842 PNMA5Q96PV4 448 aa16.81■□□□□ 0.28
UPF1-204ENST00000596842 CXorf56Q9H5V9 222 aa16.81■□□□□ 0.28
UPF1-204ENST00000596842 ZNF287Q9HBT7 754 aa16.81■□□□□ 0.28
UPF1-204ENST00000596842 SUFUQ9UMX1 484 aa16.81■□□□□ 0.28
UPF1-204ENST00000596842 FAM26FQ5R3K3 315 aa16.81■□□□□ 0.28
UPF1-204ENST00000596842 MFSD14BQ5SR56 506 aa16.81■□□□□ 0.28
UPF1-204ENST00000596842 CEP104O60308 925 aa16.81■□□□□ 0.28
UPF1-204ENST00000596842 ERLIN2O94905 339 aa16.81■□□□□ 0.28
UPF1-204ENST00000596842 CORO7P57737 925 aa16.81■□□□□ 0.28
UPF1-204ENST00000596842 IKQ13123 557 aaPredicted RBP16.81■□□□□ 0.28
UPF1-204ENST00000596842 DPP8Q6V1X1 898 aaPredicted RBP16.81■□□□□ 0.28
UPF1-204ENST00000596842 GBP6Q6ZN66 633 aa16.81■□□□□ 0.28
UPF1-204ENST00000596842 DDX42Q86XP3 938 aaKnown RBP eCLIP16.81■□□□□ 0.28
UPF1-204ENST00000596842 OR2W6PQ8NHA6 318 aa16.81■□□□□ 0.28
UPF1-204ENST00000596842 PPANQ9NQ55 473 aaKnown RBP16.81■□□□□ 0.28
UPF1-204ENST00000596842 ITGB4P16144 1822 aa16.8■□□□□ 0.28
UPF1-204ENST00000596842 CALRP27797 417 aaKnown RBP16.8■□□□□ 0.28
UPF1-204ENST00000596842 STAT3P40763 770 aa16.8■□□□□ 0.28
UPF1-204ENST00000596842 PRPHP41219 470 aa16.8■□□□□ 0.28
UPF1-204ENST00000596842 SNAP25P60880 206 aa16.8■□□□□ 0.28
UPF1-204ENST00000596842 PRPF4BQ13523 1007 aaKnown RBP16.8■□□□□ 0.28
UPF1-204ENST00000596842 ECM1Q16610 540 aa16.8■□□□□ 0.28
UPF1-204ENST00000596842 NAA35Q5VZE5 725 aa16.8■□□□□ 0.28
UPF1-204ENST00000596842 GALNT17Q6IS24 598 aa16.8■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 126.9 ms