RNA–Protein interactions for RNA: ENST00000596672.5

LIG1-213, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 792 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-213ENST00000596672 MYO7AQ13402 2215 aa12.14□□□□□ -0.47
LIG1-213ENST00000596672 ERICH2A1L162 156 aa12.13□□□□□ -0.47
LIG1-213ENST00000596672 GGPS1O95749 300 aa12.13□□□□□ -0.47
LIG1-213ENST00000596672 FGBP02675 491 aa12.13□□□□□ -0.47
LIG1-213ENST00000596672 IQCF3P0C7M6 154 aa12.13□□□□□ -0.47
LIG1-213ENST00000596672 PSEN2P49810 448 aa12.13□□□□□ -0.47
LIG1-213ENST00000596672 ERICH6BQ5W0A0 696 aa12.13□□□□□ -0.47
LIG1-213ENST00000596672 TMTC3Q6ZXV5 915 aa12.13□□□□□ -0.47
LIG1-213ENST00000596672 DEFB128Q7Z7B8 93 aa12.13□□□□□ -0.47
LIG1-213ENST00000596672 SESTD1Q86VW0 696 aa12.13□□□□□ -0.47
LIG1-213ENST00000596672 SGMS1Q86VZ5 419 aa12.13□□□□□ -0.47
LIG1-213ENST00000596672 CCDC82Q8N4S0 544 aa12.13□□□□□ -0.47
LIG1-213ENST00000596672 KCNB2Q92953 911 aa12.13□□□□□ -0.47
LIG1-213ENST00000596672 INPP4AQ96PE3 977 aaPredicted RBP12.13□□□□□ -0.47
LIG1-213ENST00000596672 C16orf70Q9BSU1 422 aa12.13□□□□□ -0.47
LIG1-213ENST00000596672 MTA3Q9BTC8 594 aa12.13□□□□□ -0.47
LIG1-213ENST00000596672 RTEL1Q9NZ71 1219 aa12.13□□□□□ -0.47
LIG1-213ENST00000596672 MRVI1Q9Y6F6 885 aa12.13□□□□□ -0.47
LIG1-213ENST00000596672 SPATA31C2B4DYI2 1134 aa12.12□□□□□ -0.47
LIG1-213ENST00000596672 ATP9AO75110 1047 aa12.12□□□□□ -0.47
LIG1-213ENST00000596672 F2P00734 622 aa12.12□□□□□ -0.47
LIG1-213ENST00000596672 SMARCA1P28370 1054 aa12.12□□□□□ -0.47
LIG1-213ENST00000596672 CDC27P30260 824 aa12.12□□□□□ -0.47
LIG1-213ENST00000596672 UBE2SQ16763 222 aa12.12□□□□□ -0.47
LIG1-213ENST00000596672 TSGA10IPQ3SY00 556 aa12.12□□□□□ -0.47
LIG1-213ENST00000596672 PSRC1Q6PGN9 363 aaPredicted RBP12.12□□□□□ -0.47
LIG1-213ENST00000596672 TMCO2Q7Z6W1 182 aaPredicted RBP12.12□□□□□ -0.47
LIG1-213ENST00000596672 DHX37Q8IY37 1157 aaKnown RBP12.12□□□□□ -0.47
LIG1-213ENST00000596672 FANCBQ8NB91 859 aa12.12□□□□□ -0.47
LIG1-213ENST00000596672 PPTC7Q8NI37 304 aa12.12□□□□□ -0.47
LIG1-213ENST00000596672 TIFAQ96CG3 184 aa12.12□□□□□ -0.47
LIG1-213ENST00000596672 TMEM87BQ96K49 555 aa12.12□□□□□ -0.47
LIG1-213ENST00000596672 ALG1Q9BT22 464 aa12.12□□□□□ -0.47
LIG1-213ENST00000596672 SEZ6LQ9BYH1 1024 aa12.12□□□□□ -0.47
LIG1-213ENST00000596672 ZNF576Q9H609 170 aa12.12□□□□□ -0.47
LIG1-213ENST00000596672 PRDM6Q9NQX0 595 aa12.12□□□□□ -0.47
LIG1-213ENST00000596672 MAP3K20Q9NYL2 800 aaKnown RBP12.12□□□□□ -0.47
LIG1-213ENST00000596672 CNTNAP5Q8WYK1 1306 aa12.11□□□□□ -0.47
LIG1-213ENST00000596672 KPNA6O60684 536 aa12.11□□□□□ -0.47
LIG1-213ENST00000596672 NBNO60934 754 aa12.11□□□□□ -0.47
LIG1-213ENST00000596672 ICAM3P32942 547 aa12.11□□□□□ -0.47
LIG1-213ENST00000596672 PTPN11Q06124 597 aaPredicted RBP12.11□□□□□ -0.47
LIG1-213ENST00000596672 LAMC2Q13753 1193 aa12.11□□□□□ -0.47
LIG1-213ENST00000596672 SART3Q15020 963 aaKnown RBP12.11□□□□□ -0.47
LIG1-213ENST00000596672 PTGISQ16647 500 aa12.11□□□□□ -0.47
LIG1-213ENST00000596672 KIAA0753Q2KHM9 967 aa12.11□□□□□ -0.47
LIG1-213ENST00000596672 APOA5Q6Q788 366 aa12.11□□□□□ -0.47
LIG1-213ENST00000596672 CASC1Q6TDU7 716 aa12.11□□□□□ -0.47
LIG1-213ENST00000596672 TRIM50Q86XT4 487 aa12.11□□□□□ -0.47
LIG1-213ENST00000596672 SAMD3Q8N6K7 520 aa12.11□□□□□ -0.47
LIG1-213ENST00000596672 NKX2-4Q9H2Z4 354 aa12.11□□□□□ -0.47
LIG1-213ENST00000596672 GTF2IRD1Q9UHL9 959 aa12.11□□□□□ -0.47
LIG1-213ENST00000596672 XIRP2A4UGR9 3374 aa12.1□□□□□ -0.47
LIG1-213ENST00000596672 EPOPA6NHQ4 379 aa12.1□□□□□ -0.47
LIG1-213ENST00000596672 B4DLN1 442 aa12.1□□□□□ -0.47
LIG1-213ENST00000596672 PIK3CDO00329 1044 aa12.1□□□□□ -0.47
LIG1-213ENST00000596672 CDC45O75419 566 aa12.1□□□□□ -0.47
LIG1-213ENST00000596672 ITGB5P18084 799 aa12.1□□□□□ -0.47
LIG1-213ENST00000596672 CASTP20810 708 aaKnown RBP12.1□□□□□ -0.47
LIG1-213ENST00000596672 CCND2P30279 289 aa12.1□□□□□ -0.47
LIG1-213ENST00000596672 HOXC8P31273 242 aa12.1□□□□□ -0.47
LIG1-213ENST00000596672 MRPL12P52815 198 aaKnown RBP12.1□□□□□ -0.47
LIG1-213ENST00000596672 RBL2Q08999 1139 aa12.1□□□□□ -0.47
LIG1-213ENST00000596672 MFSD10Q14728 455 aa12.1□□□□□ -0.47
LIG1-213ENST00000596672 DGKDQ16760 1214 aa12.1□□□□□ -0.47
LIG1-213ENST00000596672 WWC2Q6AWC2 1192 aa12.1□□□□□ -0.47
LIG1-213ENST00000596672 NFXL1Q6ZNB6 911 aa12.1□□□□□ -0.47
LIG1-213ENST00000596672 MICU3Q86XE3 530 aa12.1□□□□□ -0.47
LIG1-213ENST00000596672 CTCFLQ8NI51 663 aaPredicted RBP12.1□□□□□ -0.47
LIG1-213ENST00000596672 RRP36Q96EU6 259 aaKnown RBP12.1□□□□□ -0.47
LIG1-213ENST00000596672 SPATA33Q96N06 139 aa12.1□□□□□ -0.47
LIG1-213ENST00000596672 NEK1Q96PY6 1258 aa12.1□□□□□ -0.47
LIG1-213ENST00000596672 MPHOSPH6Q99547 160 aaKnown RBP12.1□□□□□ -0.47
LIG1-213ENST00000596672 PRDM12Q9H4Q4 367 aa12.1□□□□□ -0.47
LIG1-213ENST00000596672 PPP4R2Q9NY27 417 aa12.1□□□□□ -0.47
LIG1-213ENST00000596672 KAT6AQ92794 2004 aa12.1□□□□□ -0.47
LIG1-213ENST00000596672 TMEM265A0A087WTH1 108 aa12.09□□□□□ -0.47
LIG1-213ENST00000596672 CCDC69A6NI79 296 aa12.09□□□□□ -0.47
LIG1-213ENST00000596672 RFXAPO00287 272 aa12.09□□□□□ -0.47
LIG1-213ENST00000596672 PITPNM1O00562 1244 aa12.09□□□□□ -0.47
LIG1-213ENST00000596672 PPFIA4O75335 1185 aa12.09□□□□□ -0.47
LIG1-213ENST00000596672 SUPT20HL2P0C7V6 817 aa12.09□□□□□ -0.47
LIG1-213ENST00000596672 CKBP12277 381 aa12.09□□□□□ -0.47
LIG1-213ENST00000596672 CYFIP1Q7L576 1253 aa12.09□□□□□ -0.47
LIG1-213ENST00000596672 DHX32Q7L7V1 743 aaKnown RBP12.09□□□□□ -0.47
LIG1-213ENST00000596672 MAFAQ8NHW3 353 aaPredicted RBP12.09□□□□□ -0.47
LIG1-213ENST00000596672 CYP2W1Q8TAV3 490 aa12.09□□□□□ -0.47
LIG1-213ENST00000596672 PGBD1Q96JS3 809 aa12.09□□□□□ -0.47
LIG1-213ENST00000596672 GPR20Q99678 358 aa12.09□□□□□ -0.47
LIG1-213ENST00000596672 SNX14Q9Y5W7 946 aa12.09□□□□□ -0.47
LIG1-213ENST00000596672 SLC12A7Q9Y666 1083 aa12.09□□□□□ -0.47
LIG1-213ENST00000596672 SIP14410 1827 aa12.09□□□□□ -0.47
LIG1-213ENST00000596672 GSTTP1A0A1W2PQM5 241 aa12.08□□□□□ -0.48
LIG1-213ENST00000596672 EDIL3O43854 480 aa12.08□□□□□ -0.48
LIG1-213ENST00000596672 LGALS2P05162 132 aa12.08□□□□□ -0.48
LIG1-213ENST00000596672 TGFB3P10600 412 aa12.08□□□□□ -0.48
LIG1-213ENST00000596672 KCNA2P16389 499 aa12.08□□□□□ -0.48
LIG1-213ENST00000596672 KIF5BP33176 963 aa12.08□□□□□ -0.48
LIG1-213ENST00000596672 ADD1P35611 737 aaKnown RBP12.08□□□□□ -0.48
LIG1-213ENST00000596672 ADAM17P78536 824 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms