RNA–Protein interactions for RNA: ENST00000596436.5

USHBP1-206, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 3

Gene USHBP1, Length 487 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-206ENST00000596436 CATIPQ7Z7H3 387 aa18.46■□□□□ 0.55
USHBP1-206ENST00000596436 ADGRF4Q8IZF3 695 aa18.46■□□□□ 0.55
USHBP1-206ENST00000596436 NSUN6Q8TEA1 469 aaKnown RBP18.46■□□□□ 0.55
USHBP1-206ENST00000596436 DHX38Q92620 1227 aaKnown RBP18.46■□□□□ 0.55
USHBP1-206ENST00000596436 TAAR1Q96RJ0 339 aa18.46■□□□□ 0.55
USHBP1-206ENST00000596436 BAZ2BQ9UIF8 2168 aaKnown RBP18.45■□□□□ 0.54
USHBP1-206ENST00000596436 TCF20Q9UGU0 1960 aaKnown RBP18.45■□□□□ 0.54
USHBP1-206ENST00000596436 KLRF2D3W0D1 207 aa18.45■□□□□ 0.54
USHBP1-206ENST00000596436 GTPBP6O43824 516 aaPredicted RBP18.45■□□□□ 0.54
USHBP1-206ENST00000596436 LPXNO60711 386 aa18.45■□□□□ 0.54
USHBP1-206ENST00000596436 CXCL10P02778 98 aa18.45■□□□□ 0.54
USHBP1-206ENST00000596436 LY6KQ17RY6 165 aa18.45■□□□□ 0.54
USHBP1-206ENST00000596436 C8orf34Q49A92 452 aa18.45■□□□□ 0.54
USHBP1-206ENST00000596436 NFXL1Q6ZNB6 911 aa18.45■□□□□ 0.54
USHBP1-206ENST00000596436 RAB11FIP4Q86YS3 637 aa18.45■□□□□ 0.54
USHBP1-206ENST00000596436 CCDC155Q8N6L0 562 aa18.45■□□□□ 0.54
USHBP1-206ENST00000596436 IL27Q8NEV9 243 aa18.45■□□□□ 0.54
USHBP1-206ENST00000596436 FTOQ9C0B1 505 aaKnown RBP eCLIP18.45■□□□□ 0.54
USHBP1-206ENST00000596436 JMJD4Q9H9V9 463 aa18.45■□□□□ 0.54
USHBP1-206ENST00000596436 NOD1Q9Y239 953 aa18.45■□□□□ 0.54
USHBP1-206ENST00000596436 GTF3C3Q9Y5Q9 886 aa18.45■□□□□ 0.54
USHBP1-206ENST00000596436 CCDC69A6NI79 296 aa18.44■□□□□ 0.54
USHBP1-206ENST00000596436 DDAH1O94760 285 aa18.44■□□□□ 0.54
USHBP1-206ENST00000596436 PARNO95453 639 aaKnown RBP18.44■□□□□ 0.54
USHBP1-206ENST00000596436 HOXD8P13378 290 aaPredicted RBP18.44■□□□□ 0.54
USHBP1-206ENST00000596436 SELPP16109 830 aa18.44■□□□□ 0.54
USHBP1-206ENST00000596436 RXRAP19793 462 aa18.44■□□□□ 0.54
USHBP1-206ENST00000596436 KCNQ1P51787 676 aa18.44■□□□□ 0.54
USHBP1-206ENST00000596436 WDR5P61964 334 aaKnown RBP18.44■□□□□ 0.54
USHBP1-206ENST00000596436 STXBP2Q15833 593 aa18.44■□□□□ 0.54
USHBP1-206ENST00000596436 QRICH1Q2TAL8 776 aa18.44■□□□□ 0.54
USHBP1-206ENST00000596436 SGMS1Q86VZ5 419 aa18.44■□□□□ 0.54
USHBP1-206ENST00000596436 MCF2L2Q86YR7 1114 aa18.44■□□□□ 0.54
USHBP1-206ENST00000596436 MICALL1Q8N3F8 863 aa18.44■□□□□ 0.54
USHBP1-206ENST00000596436 NECAB3Q96P71 396 aaPredicted RBP18.44■□□□□ 0.54
USHBP1-206ENST00000596436 RMDN3Q96TC7 470 aa18.44■□□□□ 0.54
USHBP1-206ENST00000596436 CERS4Q9HA82 394 aa18.44■□□□□ 0.54
USHBP1-206ENST00000596436 GTF2IRD1Q9UHL9 959 aa18.44■□□□□ 0.54
USHBP1-206ENST00000596436 DDX41Q9UJV9 622 aaKnown RBP18.44■□□□□ 0.54
USHBP1-206ENST00000596436 COG5Q9UP83 839 aa18.44■□□□□ 0.54
USHBP1-206ENST00000596436 KIF28PB7ZC32 967 aa18.43■□□□□ 0.54
USHBP1-206ENST00000596436 HAS3O00219 553 aa18.43■□□□□ 0.54
USHBP1-206ENST00000596436 OPLAHO14841 1288 aa18.43■□□□□ 0.54
USHBP1-206ENST00000596436 CYTH3O43739 400 aa18.43■□□□□ 0.54
USHBP1-206ENST00000596436 EIF3JO75822 258 aaKnown RBP18.43■□□□□ 0.54
USHBP1-206ENST00000596436 F2P00734 622 aa18.43■□□□□ 0.54
USHBP1-206ENST00000596436 HMGB1P09429 215 aaKnown RBP18.43■□□□□ 0.54
USHBP1-206ENST00000596436 CASTP20810 708 aaKnown RBP18.43■□□□□ 0.54
USHBP1-206ENST00000596436 GRB10Q13322 594 aa18.43■□□□□ 0.54
USHBP1-206ENST00000596436 KRT40Q6A162 431 aa18.43■□□□□ 0.54
USHBP1-206ENST00000596436 TRAF7Q6Q0C0 670 aa18.43■□□□□ 0.54
USHBP1-206ENST00000596436 BLOC1S2Q6QNY1 142 aa18.43■□□□□ 0.54
USHBP1-206ENST00000596436 SEPT14Q6ZU15 432 aa18.43■□□□□ 0.54
USHBP1-206ENST00000596436 LRRC8DQ7L1W4 858 aa18.43■□□□□ 0.54
USHBP1-206ENST00000596436 SPRED2Q7Z698 418 aa18.43■□□□□ 0.54
USHBP1-206ENST00000596436 TMTC2Q8N394 836 aa18.43■□□□□ 0.54
USHBP1-206ENST00000596436 ARNTL2Q8WYA1 636 aa18.43■□□□□ 0.54
USHBP1-206ENST00000596436 VAT1LQ9HCJ6 419 aa18.43■□□□□ 0.54
USHBP1-206ENST00000596436 BRPF3Q9ULD4 1205 aa18.43■□□□□ 0.54
USHBP1-206ENST00000596436 DHX16O60231 1041 aaKnown RBP18.42■□□□□ 0.54
USHBP1-206ENST00000596436 NBNO60934 754 aa18.42■□□□□ 0.54
USHBP1-206ENST00000596436 RPS6KB1P23443 525 aa18.42■□□□□ 0.54
USHBP1-206ENST00000596436 HSD17B4P51659 736 aa18.42■□□□□ 0.54
USHBP1-206ENST00000596436 DGKDQ16760 1214 aa18.42■□□□□ 0.54
USHBP1-206ENST00000596436 TRIM71Q2Q1W2 868 aaKnown RBP18.42■□□□□ 0.54
USHBP1-206ENST00000596436 CNKSR3Q6P9H4 555 aa18.42■□□□□ 0.54
USHBP1-206ENST00000596436 MTMR8Q96EF0 704 aa18.42■□□□□ 0.54
USHBP1-206ENST00000596436 MAP3K14Q99558 947 aa18.42■□□□□ 0.54
USHBP1-206ENST00000596436 PXMP2Q9NR77 195 aa18.42■□□□□ 0.54
USHBP1-206ENST00000596436 MRPL11Q9Y3B7 192 aaKnown RBP18.42■□□□□ 0.54
USHBP1-206ENST00000596436 LCHNA4D1U4 455 aa18.41■□□□□ 0.54
USHBP1-206ENST00000596436 TLL1O43897 1013 aa18.41■□□□□ 0.54
USHBP1-206ENST00000596436 PPP1R11O60927 126 aaPredicted RBP18.41■□□□□ 0.54
USHBP1-206ENST00000596436 PLEKHA8P1O95397 391 aa18.41■□□□□ 0.54
USHBP1-206ENST00000596436 CKBP12277 381 aa18.41■□□□□ 0.54
USHBP1-206ENST00000596436 KCNJ6P48051 423 aa18.41■□□□□ 0.54
USHBP1-206ENST00000596436 TCTN1Q2MV58 587 aa18.41■□□□□ 0.54
USHBP1-206ENST00000596436 APOA5Q6Q788 366 aa18.41■□□□□ 0.54
USHBP1-206ENST00000596436 Q6ZUG5 572 aa18.41■□□□□ 0.54
USHBP1-206ENST00000596436 FBXO11Q86XK2 927 aa18.41■□□□□ 0.54
USHBP1-206ENST00000596436 PPTC7Q8NI37 304 aa18.41■□□□□ 0.54
USHBP1-206ENST00000596436 RIOX1Q9H6W3 641 aa18.41■□□□□ 0.54
USHBP1-206ENST00000596436 LMCD1Q9NZU5 365 aa18.41■□□□□ 0.54
USHBP1-206ENST00000596436 HDAC6Q9UBN7 1215 aa18.41■□□□□ 0.54
USHBP1-206ENST00000596436 RAPGEFL1Q9UHV5 662 aa18.41■□□□□ 0.54
USHBP1-206ENST00000596436 SLC12A7Q9Y666 1083 aa18.41■□□□□ 0.54
USHBP1-206ENST00000596436 SIP14410 1827 aa18.4■□□□□ 0.54
USHBP1-206ENST00000596436 ABHD14A-ACY1A0A1B0GW23 586 aa18.4■□□□□ 0.54
USHBP1-206ENST00000596436 RGS20O76081 388 aa18.4■□□□□ 0.54
USHBP1-206ENST00000596436 GJB5O95377 273 aa18.4■□□□□ 0.54
USHBP1-206ENST00000596436 NR3C2P08235 984 aa18.4■□□□□ 0.54
USHBP1-206ENST00000596436 PSEN2P49810 448 aa18.4■□□□□ 0.54
USHBP1-206ENST00000596436 DEFB103AP81534 67 aa18.4■□□□□ 0.54
USHBP1-206ENST00000596436 PTK7Q13308 1070 aa18.4■□□□□ 0.54
USHBP1-206ENST00000596436 MKRN4PQ13434 485 aaPredicted RBP18.4■□□□□ 0.54
USHBP1-206ENST00000596436 LAMC2Q13753 1193 aa18.4■□□□□ 0.54
USHBP1-206ENST00000596436 MICU3Q86XE3 530 aa18.4■□□□□ 0.54
USHBP1-206ENST00000596436 CTCFLQ8NI51 663 aaPredicted RBP18.4■□□□□ 0.54
USHBP1-206ENST00000596436 KATNAL1Q9BW62 490 aa18.4■□□□□ 0.54
USHBP1-206ENST00000596436 ZSWIM6Q9HCJ5 1215 aa18.4■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms