RNA–Protein interactions for RNA: ENST00000596104.5

LIG1-209, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 531 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-209ENST00000596104 PDCD2LQ9BRP1 358 aa11.63□□□□□ -0.55
LIG1-209ENST00000596104 UBE2ZQ9H832 354 aaPredicted RBP11.63□□□□□ -0.55
LIG1-209ENST00000596104 ZSWIM5Q9P217 1185 aa11.63□□□□□ -0.55
LIG1-209ENST00000596104 MTUS1Q9ULD2 1270 aa11.63□□□□□ -0.55
LIG1-209ENST00000596104 GPR37L1O60883 481 aa11.62□□□□□ -0.55
LIG1-209ENST00000596104 PPP1R11O60927 126 aaPredicted RBP11.62□□□□□ -0.55
LIG1-209ENST00000596104 PPFIA4O75335 1185 aa11.62□□□□□ -0.55
LIG1-209ENST00000596104 LGR5O75473 907 aa11.62□□□□□ -0.55
LIG1-209ENST00000596104 PARP1P09874 1014 aaKnown RBP11.62□□□□□ -0.55
LIG1-209ENST00000596104 HSDL1Q3SXM5 330 aa11.62□□□□□ -0.55
LIG1-209ENST00000596104 CELF3Q5SZQ8 465 aaKnown RBP11.62□□□□□ -0.55
LIG1-209ENST00000596104 MYSM1Q5VVJ2 828 aa11.62□□□□□ -0.55
LIG1-209ENST00000596104 LIN28BQ6ZN17 250 aaKnown RBP eCLIP11.62□□□□□ -0.55
LIG1-209ENST00000596104 STOX1Q6ZVD7 989 aa11.62□□□□□ -0.55
LIG1-209ENST00000596104 SERINC5Q86VE9 423 aa11.62□□□□□ -0.55
LIG1-209ENST00000596104 DHX37Q8IY37 1157 aaKnown RBP11.62□□□□□ -0.55
LIG1-209ENST00000596104 STAG2Q8N3U4 1231 aa11.62□□□□□ -0.55
LIG1-209ENST00000596104 IL31RAQ8NI17 732 aa11.62□□□□□ -0.55
LIG1-209ENST00000596104 AMNQ9BXJ7 453 aa11.62□□□□□ -0.55
LIG1-209ENST00000596104 OSBPL3Q9H4L5 887 aa11.62□□□□□ -0.55
LIG1-209ENST00000596104 VAT1LQ9HCJ6 419 aa11.62□□□□□ -0.55
LIG1-209ENST00000596104 COL4A4P53420 1690 aaPredicted RBP11.62□□□□□ -0.55
LIG1-209ENST00000596104 PTPRSQ13332 1948 aa11.61□□□□□ -0.55
LIG1-209ENST00000596104 PI4K2BG5E9Z4 385 aa11.61□□□□□ -0.55
LIG1-209ENST00000596104 DHX16O60231 1041 aaKnown RBP11.61□□□□□ -0.55
LIG1-209ENST00000596104 GGPS1O95749 300 aa11.61□□□□□ -0.55
LIG1-209ENST00000596104 HOXC8P31273 242 aa11.61□□□□□ -0.55
LIG1-209ENST00000596104 HTRA4P83105 476 aaPredicted RBP11.61□□□□□ -0.55
LIG1-209ENST00000596104 SP2Q02086 613 aa11.61□□□□□ -0.55
LIG1-209ENST00000596104 SLC35G1Q2M3R5 365 aa11.61□□□□□ -0.55
LIG1-209ENST00000596104 LEXMQ3ZCV2 418 aa11.61□□□□□ -0.55
LIG1-209ENST00000596104 FAM117BQ6P1L5 589 aa11.61□□□□□ -0.55
LIG1-209ENST00000596104 CWC27Q6UX04 472 aaKnown RBP11.61□□□□□ -0.55
LIG1-209ENST00000596104 VSIG10LQ86VR7 867 aa11.61□□□□□ -0.55
LIG1-209ENST00000596104 SMC5Q8IY18 1101 aa11.61□□□□□ -0.55
LIG1-209ENST00000596104 DBF4BQ8NFT6 615 aa11.61□□□□□ -0.55
LIG1-209ENST00000596104 GADD45GIP1Q8TAE8 222 aaPredicted RBP11.61□□□□□ -0.55
LIG1-209ENST00000596104 SP7Q8TDD2 431 aaPredicted RBP11.61□□□□□ -0.55
LIG1-209ENST00000596104 C17orf80Q9BSJ5 609 aa11.61□□□□□ -0.55
LIG1-209ENST00000596104 C16orf70Q9BSU1 422 aa11.61□□□□□ -0.55
LIG1-209ENST00000596104 DSCC1Q9BVC3 393 aa11.61□□□□□ -0.55
LIG1-209ENST00000596104 INSL6Q9Y581 213 aa11.61□□□□□ -0.55
LIG1-209ENST00000596104 EMSYQ7Z589 1322 aa11.6□□□□□ -0.55
LIG1-209ENST00000596104 BRWD1Q9NSI6 2320 aa11.6□□□□□ -0.55
LIG1-209ENST00000596104 FAM86C2PA6NEL3 165 aa11.6□□□□□ -0.55
LIG1-209ENST00000596104 SORBS3O60504 671 aa11.6□□□□□ -0.55
LIG1-209ENST00000596104 TGFB3P10600 412 aa11.6□□□□□ -0.55
LIG1-209ENST00000596104 MYCLP12524 364 aaPredicted RBP11.6□□□□□ -0.55
LIG1-209ENST00000596104 UBA1P22314 1058 aaKnown RBP11.6□□□□□ -0.55
LIG1-209ENST00000596104 PGM5Q15124 567 aa11.6□□□□□ -0.55
LIG1-209ENST00000596104 SEC23AQ15436 765 aa11.6□□□□□ -0.55
LIG1-209ENST00000596104 PLEKHG4Q58EX7 1191 aa11.6□□□□□ -0.55
LIG1-209ENST00000596104 KCNV1Q6PIU1 500 aa11.6□□□□□ -0.55
LIG1-209ENST00000596104 PLEKHM2Q8IWE5 1019 aa11.6□□□□□ -0.55
LIG1-209ENST00000596104 FAM178BQ8IXR5 827 aa11.6□□□□□ -0.55
LIG1-209ENST00000596104 FBXO22Q8NEZ5 403 aa11.6□□□□□ -0.55
LIG1-209ENST00000596104 GPKOWQ92917 476 aaPredicted RBP eCLIP11.6□□□□□ -0.55
LIG1-209ENST00000596104 SPATA33Q96N06 139 aa11.6□□□□□ -0.55
LIG1-209ENST00000596104 MAP3K20Q9NYL2 800 aaKnown RBP11.6□□□□□ -0.55
LIG1-209ENST00000596104 HCN4Q9Y3Q4 1203 aa11.6□□□□□ -0.55
LIG1-209ENST00000596104 PALM3A6NDB9 673 aaPredicted RBP11.59□□□□□ -0.55
LIG1-209ENST00000596104 RSPH10B2B2RC85 870 aa11.59□□□□□ -0.55
LIG1-209ENST00000596104 KLRF2D3W0D1 207 aa11.59□□□□□ -0.55
LIG1-209ENST00000596104 ZBTB5O15062 677 aa11.59□□□□□ -0.55
LIG1-209ENST00000596104 AMHP03971 560 aa11.59□□□□□ -0.55
LIG1-209ENST00000596104 RSPH10BP0C881 870 aa11.59□□□□□ -0.55
LIG1-209ENST00000596104 KCNA5P22460 613 aa11.59□□□□□ -0.55
LIG1-209ENST00000596104 HOXA13P31271 388 aaPredicted RBP11.59□□□□□ -0.55
LIG1-209ENST00000596104 THPOP40225 353 aa11.59□□□□□ -0.55
LIG1-209ENST00000596104 IMMTQ16891 758 aaKnown RBP11.59□□□□□ -0.55
LIG1-209ENST00000596104 MYOCDQ8IZQ8 938 aa11.59□□□□□ -0.55
LIG1-209ENST00000596104 SAMD3Q8N6K7 520 aa11.59□□□□□ -0.55
LIG1-209ENST00000596104 UBAC1Q9BSL1 405 aa11.59□□□□□ -0.55
LIG1-209ENST00000596104 OSBPL7Q9BZF2 842 aa11.59□□□□□ -0.55
LIG1-209ENST00000596104 KRT23Q9C075 422 aa11.59□□□□□ -0.55
LIG1-209ENST00000596104 BCAS3Q9H6U6 928 aa11.59□□□□□ -0.55
LIG1-209ENST00000596104 DIAPH3Q9NSV4 1193 aa11.59□□□□□ -0.55
LIG1-209ENST00000596104 MAD2L2Q9UI95 211 aa11.59□□□□□ -0.55
LIG1-209ENST00000596104 PCDHA1Q9Y5I3 950 aa11.59□□□□□ -0.55
LIG1-209ENST00000596104 C17orf102A2RUQ5 167 aa11.58□□□□□ -0.56
LIG1-209ENST00000596104 H3BRB1 525 aa11.58□□□□□ -0.56
LIG1-209ENST00000596104 SMIM10L2AP0DMW4 78 aa11.58□□□□□ -0.56
LIG1-209ENST00000596104 SMIM10L2BP0DMW5 78 aa11.58□□□□□ -0.56
LIG1-209ENST00000596104 IL9P15248 144 aa11.58□□□□□ -0.56
LIG1-209ENST00000596104 EPC2Q52LR7 807 aa11.58□□□□□ -0.56
LIG1-209ENST00000596104 IFIT1BQ5T764 474 aaKnown RBP11.58□□□□□ -0.56
LIG1-209ENST00000596104 CHD1LQ86WJ1 897 aa11.58□□□□□ -0.56
LIG1-209ENST00000596104 GJD3Q8N144 294 aa11.58□□□□□ -0.56
LIG1-209ENST00000596104 NEK9Q8TD19 979 aa11.58□□□□□ -0.56
LIG1-209ENST00000596104 ATP6V0A1Q93050 837 aa11.58□□□□□ -0.56
LIG1-209ENST00000596104 MRPL38Q96DV4 380 aaKnown RBP11.58□□□□□ -0.56
LIG1-209ENST00000596104 ZFP91Q96JP5 570 aaPredicted RBP11.58□□□□□ -0.56
LIG1-209ENST00000596104 IL25Q9H293 177 aa11.58□□□□□ -0.56
LIG1-209ENST00000596104 TUT1Q9H6E5 874 aaKnown RBP11.58□□□□□ -0.56
LIG1-209ENST00000596104 CNNM2Q9H8M5 875 aa11.58□□□□□ -0.56
LIG1-209ENST00000596104 CTNNA3Q9UI47 895 aa11.58□□□□□ -0.56
LIG1-209ENST00000596104 TRIP12Q14669 1992 aaPredicted RBP11.58□□□□□ -0.56
LIG1-209ENST00000596104 LOC101059915A0A1B0GWI6 518 aaPredicted RBP11.57□□□□□ -0.56
LIG1-209ENST00000596104 GRXCR2A6NFK2 248 aa11.57□□□□□ -0.56
LIG1-209ENST00000596104 GCOM1H8Y6P7 765 aaPredicted RBP11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms