RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 KCNV1Q6PIU1 500 aa17.38■□□□□ 0.37
TRIM28-205ENST00000595028 AFG1LQ8WV93 481 aa17.38■□□□□ 0.37
TRIM28-205ENST00000595028 PSTPIP2Q9H939 334 aa17.38■□□□□ 0.37
TRIM28-205ENST00000595028 CCDC196A0A1B0GTZ2 297 aa17.37■□□□□ 0.37
TRIM28-205ENST00000595028 hCG_1984214I3L0E3 225 aa17.37■□□□□ 0.37
TRIM28-205ENST00000595028 STAM2O75886 525 aa17.37■□□□□ 0.37
TRIM28-205ENST00000595028 UBA1P22314 1058 aaKnown RBP17.37■□□□□ 0.37
TRIM28-205ENST00000595028 MRPS9P82933 396 aaKnown RBP17.37■□□□□ 0.37
TRIM28-205ENST00000595028 ZNF713Q8N859 430 aaPredicted RBP17.37■□□□□ 0.37
TRIM28-205ENST00000595028 ZFP91Q96JP5 570 aaPredicted RBP17.37■□□□□ 0.37
TRIM28-205ENST00000595028 INPP4AQ96PE3 977 aaPredicted RBP17.37■□□□□ 0.37
TRIM28-205ENST00000595028 ZSWIM6Q9HCJ5 1215 aa17.37■□□□□ 0.37
TRIM28-205ENST00000595028 B4GALT4O60513 344 aa17.36■□□□□ 0.37
TRIM28-205ENST00000595028 TIMP1P01033 207 aa17.36■□□□□ 0.37
TRIM28-205ENST00000595028 NAPAP54920 295 aa17.36■□□□□ 0.37
TRIM28-205ENST00000595028 FPGSQ05932 587 aa17.36■□□□□ 0.37
TRIM28-205ENST00000595028 LAMC2Q13753 1193 aa17.36■□□□□ 0.37
TRIM28-205ENST00000595028 UBE2SQ16763 222 aa17.36■□□□□ 0.37
TRIM28-205ENST00000595028 GNPTABQ3T906 1256 aa17.36■□□□□ 0.37
TRIM28-205ENST00000595028 PCNX4Q63HM2 1172 aa17.36■□□□□ 0.37
TRIM28-205ENST00000595028 TYW1BQ6NUM6 668 aa17.36■□□□□ 0.37
TRIM28-205ENST00000595028 RUFY3Q7L099 469 aa17.36■□□□□ 0.37
TRIM28-205ENST00000595028 TM6SF1Q9BZW5 370 aa17.36■□□□□ 0.37
TRIM28-205ENST00000595028 ALDH8A1Q9H2A2 487 aaPredicted RBP17.36■□□□□ 0.37
TRIM28-205ENST00000595028 TANC1Q9C0D5 1861 aa17.35■□□□□ 0.37
TRIM28-205ENST00000595028 GGPS1O95749 300 aa17.35■□□□□ 0.37
TRIM28-205ENST00000595028 TGFB3P10600 412 aa17.35■□□□□ 0.37
TRIM28-205ENST00000595028 ICAM3P32942 547 aa17.35■□□□□ 0.37
TRIM28-205ENST00000595028 ADD1P35611 737 aaKnown RBP17.35■□□□□ 0.37
TRIM28-205ENST00000595028 GRIN2CQ14957 1233 aa17.35■□□□□ 0.37
TRIM28-205ENST00000595028 XRRA1Q6P2D8 792 aa17.35■□□□□ 0.37
TRIM28-205ENST00000595028 TEX2Q8IWB9 1127 aa17.35■□□□□ 0.37
TRIM28-205ENST00000595028 DHX37Q8IY37 1157 aaKnown RBP17.35■□□□□ 0.37
TRIM28-205ENST00000595028 PPTC7Q8NI37 304 aa17.35■□□□□ 0.37
TRIM28-205ENST00000595028 PPP1R12CQ9BZL4 782 aa17.35■□□□□ 0.37
TRIM28-205ENST00000595028 TRPV6Q9H1D0 765 aa17.35■□□□□ 0.37
TRIM28-205ENST00000595028 CYP46A1Q9Y6A2 500 aa17.35■□□□□ 0.37
TRIM28-205ENST00000595028 V9GY48 417 aaPredicted RBP17.35■□□□□ 0.37
TRIM28-205ENST00000595028 SPDYE3A6NKU9 549 aa17.34■□□□□ 0.37
TRIM28-205ENST00000595028 STXBP3O00186 592 aa17.34■□□□□ 0.37
TRIM28-205ENST00000595028 HOXD8P13378 290 aaPredicted RBP17.34■□□□□ 0.37
TRIM28-205ENST00000595028 HOXD11P31277 338 aaPredicted RBP17.34■□□□□ 0.37
TRIM28-205ENST00000595028 EPHB4P54760 987 aa17.34■□□□□ 0.37
TRIM28-205ENST00000595028 EVCP57679 992 aa17.34■□□□□ 0.37
TRIM28-205ENST00000595028 SP2Q02086 613 aa17.34■□□□□ 0.37
TRIM28-205ENST00000595028 DGKDQ16760 1214 aa17.34■□□□□ 0.37
TRIM28-205ENST00000595028 NBPF20Q3BBV1 942 aa17.34■□□□□ 0.37
TRIM28-205ENST00000595028 CELF3Q5SZQ8 465 aaKnown RBP17.34■□□□□ 0.37
TRIM28-205ENST00000595028 MYSM1Q5VVJ2 828 aa17.34■□□□□ 0.37
TRIM28-205ENST00000595028 MFSD5Q6N075 450 aa17.34■□□□□ 0.37
TRIM28-205ENST00000595028 NFRKBQ6P4R8 1299 aa17.34■□□□□ 0.37
TRIM28-205ENST00000595028 TRMT13Q9NUP7 481 aaKnown RBP17.34■□□□□ 0.37
TRIM28-205ENST00000595028 BARHL2Q9NY43 387 aa17.34■□□□□ 0.37
TRIM28-205ENST00000595028 FIBPO43427 364 aa17.33■□□□□ 0.36
TRIM28-205ENST00000595028 ADCY7P51828 1080 aa17.33■□□□□ 0.36
TRIM28-205ENST00000595028 PTPN11Q06124 597 aaPredicted RBP17.33■□□□□ 0.36
TRIM28-205ENST00000595028 SEMA3FQ13275 785 aa17.33■□□□□ 0.36
TRIM28-205ENST00000595028 TOB2Q14106 344 aaPredicted RBP17.33■□□□□ 0.36
TRIM28-205ENST00000595028 PFKFB3Q16875 520 aaPredicted RBP17.33■□□□□ 0.36
TRIM28-205ENST00000595028 FAM47CQ5HY64 1035 aa17.33■□□□□ 0.36
TRIM28-205ENST00000595028 KAT2BQ92831 832 aa17.33■□□□□ 0.36
TRIM28-205ENST00000595028 SPATA33Q96N06 139 aa17.33■□□□□ 0.36
TRIM28-205ENST00000595028 NOC4LQ9BVI4 516 aaKnown RBP17.33■□□□□ 0.36
TRIM28-205ENST00000595028 UPF3BQ9BZI7 483 aaKnown RBP17.33■□□□□ 0.36
TRIM28-205ENST00000595028 HIPK3Q9H422 1215 aa17.33■□□□□ 0.36
TRIM28-205ENST00000595028 RIC8AQ9NPQ8 531 aa17.33■□□□□ 0.36
TRIM28-205ENST00000595028 RTEL1Q9NZ71 1219 aa17.33■□□□□ 0.36
TRIM28-205ENST00000595028 UMODL1Q5DID0 1318 aa17.32■□□□□ 0.36
TRIM28-205ENST00000595028 SPATA31C2B4DYI2 1134 aa17.32■□□□□ 0.36
TRIM28-205ENST00000595028 SORBS3O60504 671 aa17.32■□□□□ 0.36
TRIM28-205ENST00000595028 F2P00734 622 aa17.32■□□□□ 0.36
TRIM28-205ENST00000595028 ZNF286BP0CG31 522 aa17.32■□□□□ 0.36
TRIM28-205ENST00000595028 SCG2P13521 617 aa17.32■□□□□ 0.36
TRIM28-205ENST00000595028 PDIA3P30101 505 aaKnown RBP17.32■□□□□ 0.36
TRIM28-205ENST00000595028 PPIGQ13427 754 aaKnown RBP eCLIP17.32■□□□□ 0.362e-8■□□□□ 9.6
TRIM28-205ENST00000595028 HSDL1Q3SXM5 330 aa17.32■□□□□ 0.36
TRIM28-205ENST00000595028 PPP1R13LQ8WUF5 828 aa17.32■□□□□ 0.36
TRIM28-205ENST00000595028 PCDHA6Q9UN73 950 aa17.32■□□□□ 0.36
TRIM28-205ENST00000595028 PCDHA8Q9Y5H6 950 aa17.32■□□□□ 0.36
TRIM28-205ENST00000595028 SUPT20HL2P0C7V6 817 aa17.31■□□□□ 0.36
TRIM28-205ENST00000595028 CYP2C18P33260 490 aa17.31■□□□□ 0.36
TRIM28-205ENST00000595028 NEDD9Q14511 834 aa17.31■□□□□ 0.36
TRIM28-205ENST00000595028 NTRK3Q16288 839 aa17.31■□□□□ 0.36
TRIM28-205ENST00000595028 METTL7BQ6UX53 244 aa17.31■□□□□ 0.36
TRIM28-205ENST00000595028 NLRX1Q86UT6 975 aa17.31■□□□□ 0.36
TRIM28-205ENST00000595028 SESTD1Q86VW0 696 aa17.31■□□□□ 0.36
TRIM28-205ENST00000595028 TMEM199Q8N511 208 aa17.31■□□□□ 0.36
TRIM28-205ENST00000595028 GPRASP2Q96D09 838 aa17.31■□□□□ 0.36
TRIM28-205ENST00000595028 RNPC3Q96LT9 517 aaKnown RBP17.31■□□□□ 0.36
TRIM28-205ENST00000595028 KATNAL1Q9BW62 490 aa17.31■□□□□ 0.36
TRIM28-205ENST00000595028 GLT8D2Q9H1C3 349 aa17.31■□□□□ 0.36
TRIM28-205ENST00000595028 EHMT1Q9H9B1 1298 aa17.31■□□□□ 0.36
TRIM28-205ENST00000595028 MLXIPQ9HAP2 919 aa17.31■□□□□ 0.36
TRIM28-205ENST00000595028 CHD9Q3L8U1 2897 aa17.31■□□□□ 0.36
TRIM28-205ENST00000595028 ESYT2A0FGR8 921 aa17.3■□□□□ 0.36
TRIM28-205ENST00000595028 SMCO2A6NFE2 343 aa17.3■□□□□ 0.36
TRIM28-205ENST00000595028 PRPF3O43395 683 aaKnown RBP17.3■□□□□ 0.36
TRIM28-205ENST00000595028 PPFIA4O75335 1185 aa17.3■□□□□ 0.36
TRIM28-205ENST00000595028 CYP2C9P11712 490 aa17.3■□□□□ 0.36
TRIM28-205ENST00000595028 CSF2RAP15509 400 aa17.3■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms