RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 XPOTO43592 962 aaKnown RBP10.85□□□□□ -0.67
LIG3-216ENST00000593099 CDC25AP30304 524 aa10.85□□□□□ -0.67
LIG3-216ENST00000593099 NDUFA8P51970 172 aa10.85□□□□□ -0.67
LIG3-216ENST00000593099 OXER1Q8TDS5 423 aa10.85□□□□□ -0.67
LIG3-216ENST00000593099 TCP11Q8WWU5 503 aa10.85□□□□□ -0.67
LIG3-216ENST00000593099 GMCL1Q96IK5 515 aa10.85□□□□□ -0.67
LIG3-216ENST00000593099 TNNC2P02585 160 aa10.85□□□□□ -0.67
LIG3-216ENST00000593099 PLA2G4BP0C869 781 aa10.85□□□□□ -0.67
LIG3-216ENST00000593099 VCAM1P19320 739 aa10.85□□□□□ -0.67
LIG3-216ENST00000593099 AGBL1Q96MI9 1066 aa10.85□□□□□ -0.67
LIG3-216ENST00000593099 MROH8Q9H579 483 aa10.85□□□□□ -0.67
LIG3-216ENST00000593099 CTNNA2P26232 953 aa10.85□□□□□ -0.67
LIG3-216ENST00000593099 RHBDL3P58872 404 aa10.85□□□□□ -0.67
LIG3-216ENST00000593099 FKBP1BP68106 108 aa10.85□□□□□ -0.67
LIG3-216ENST00000593099 C7orf31Q8N865 590 aa10.85□□□□□ -0.67
LIG3-216ENST00000593099 TTC16Q8NEE8 873 aa10.85□□□□□ -0.67
LIG3-216ENST00000593099 CCDC112Q8NEF3 446 aa10.85□□□□□ -0.67
LIG3-216ENST00000593099 POMGNT1Q8WZA1 660 aa10.85□□□□□ -0.67
LIG3-216ENST00000593099 CCDC42Q96M95 316 aa10.85□□□□□ -0.67
LIG3-216ENST00000593099 SLC39A2Q9NP94 309 aa10.85□□□□□ -0.67
LIG3-216ENST00000593099 ZNF302Q9NR11 478 aa10.85□□□□□ -0.67
LIG3-216ENST00000593099 ANKFY1Q9P2R3 1169 aa10.85□□□□□ -0.67
LIG3-216ENST00000593099 FAM198AQ9UFP1 575 aa10.85□□□□□ -0.67
LIG3-216ENST00000593099 PPP1R9AQ9ULJ8 1098 aa10.85□□□□□ -0.67
LIG3-216ENST00000593099 MAPK4P31152 587 aa10.85□□□□□ -0.67
LIG3-216ENST00000593099 RGS2P41220 211 aa10.85□□□□□ -0.67
LIG3-216ENST00000593099 TROAPQ12815 778 aa10.85□□□□□ -0.67
LIG3-216ENST00000593099 PLEKHH3Q7Z736 793 aa10.85□□□□□ -0.67
LIG3-216ENST00000593099 AMIGO3Q86WK7 504 aa10.85□□□□□ -0.67
LIG3-216ENST00000593099 MCPH1Q8NEM0 835 aa10.85□□□□□ -0.67
LIG3-216ENST00000593099 IL25Q9H293 177 aa10.85□□□□□ -0.67
LIG3-216ENST00000593099 BHMT2Q9H2M3 363 aa10.85□□□□□ -0.67
LIG3-216ENST00000593099 TAF1DQ9H5J8 278 aaPredicted RBP10.85□□□□□ -0.67
LIG3-216ENST00000593099 ICAM1P05362 532 aa10.84□□□□□ -0.67
LIG3-216ENST00000593099 MYL1P05976 194 aa10.84□□□□□ -0.67
LIG3-216ENST00000593099 INHBEP58166 350 aa10.84□□□□□ -0.67
LIG3-216ENST00000593099 VWA3BQ502W6 1294 aa10.84□□□□□ -0.67
LIG3-216ENST00000593099 LUZP1Q86V48 1076 aa10.84□□□□□ -0.67
LIG3-216ENST00000593099 GMCL1P1Q8NEA9 526 aa10.84□□□□□ -0.67
LIG3-216ENST00000593099 OR6J1Q8NGC5 347 aa10.84□□□□□ -0.67
LIG3-216ENST00000593099 SRRTQ9BXP5 876 aaKnown RBP10.84□□□□□ -0.67
LIG3-216ENST00000593099 SUDS3Q9H7L9 328 aaPredicted RBP10.84□□□□□ -0.67
LIG3-216ENST00000593099 ARMCX3Q9UH62 379 aaPredicted RBP10.84□□□□□ -0.67
LIG3-216ENST00000593099 GOLGA6L9A6NEM1 432 aa10.84□□□□□ -0.67
LIG3-216ENST00000593099 P4HBP07237 508 aaKnown RBP10.84□□□□□ -0.67
LIG3-216ENST00000593099 SLFN14P0C7P3 912 aa10.84□□□□□ -0.67
LIG3-216ENST00000593099 NOX5Q96PH1 765 aa10.84□□□□□ -0.67
LIG3-216ENST00000593099 ZNF541Q9H0D2 1346 aa10.84□□□□□ -0.67
LIG3-216ENST00000593099 NPM3O75607 178 aaKnown RBP10.84□□□□□ -0.67
LIG3-216ENST00000593099 TMEM191BP0C7N4 346 aa10.84□□□□□ -0.67
LIG3-216ENST00000593099 ATF7P17544 494 aaPredicted RBP10.84□□□□□ -0.67
LIG3-216ENST00000593099 PLCG1P19174 1290 aa10.84□□□□□ -0.67
LIG3-216ENST00000593099 QARSP47897 775 aaKnown RBP10.84□□□□□ -0.67
LIG3-216ENST00000593099 DNA2P51530 1060 aa10.84□□□□□ -0.67
LIG3-216ENST00000593099 YWHAEP62258 255 aaKnown RBP10.84□□□□□ -0.67
LIG3-216ENST00000593099 XRRA1Q6P2D8 792 aa10.84□□□□□ -0.67
LIG3-216ENST00000593099 ZFPM1Q8IX07 1006 aa10.84□□□□□ -0.67
LIG3-216ENST00000593099 SCFD2Q8WU76 684 aa10.84□□□□□ -0.67
LIG3-216ENST00000593099 GSDMAQ96QA5 445 aa10.84□□□□□ -0.67
LIG3-216ENST00000593099 ACCSQ96QU6 501 aa10.84□□□□□ -0.67
LIG3-216ENST00000593099 APOL6Q9BWW8 343 aa10.84□□□□□ -0.67
LIG3-216ENST00000593099 FTOQ9C0B1 505 aaKnown RBP eCLIP10.84□□□□□ -0.67
LIG3-216ENST00000593099 PARVGQ9HBI0 331 aa10.84□□□□□ -0.67
LIG3-216ENST00000593099 METTL14Q9HCE5 456 aaKnown RBP10.84□□□□□ -0.67
LIG3-216ENST00000593099 ALS2Q96Q42 1657 aa10.84□□□□□ -0.67
LIG3-216ENST00000593099 DYNC1LI2O43237 492 aaPredicted RBP10.84□□□□□ -0.67
LIG3-216ENST00000593099 XRCC5P13010 732 aaKnown RBP10.84□□□□□ -0.67
LIG3-216ENST00000593099 SARNPP82979 210 aaKnown RBP10.84□□□□□ -0.67
LIG3-216ENST00000593099 MCM6Q14566 821 aa10.84□□□□□ -0.67
LIG3-216ENST00000593099 DEFB115Q30KQ5 88 aa10.84□□□□□ -0.67
LIG3-216ENST00000593099 SWSAP1Q6NVH7 229 aa10.84□□□□□ -0.67
LIG3-216ENST00000593099 ACBD3Q9H3P7 528 aa10.84□□□□□ -0.67
LIG3-216ENST00000593099 SLC9A2Q9UBY0 812 aa10.84□□□□□ -0.67
LIG3-216ENST00000593099 RGS17Q9UGC6 210 aaPredicted RBP10.84□□□□□ -0.67
LIG3-216ENST00000593099 DDX52Q9Y2R4 599 aaKnown RBP eCLIP10.84□□□□□ -0.67
LIG3-216ENST00000593099 KCPQ6ZWJ8 1503 aa10.84□□□□□ -0.67
LIG3-216ENST00000593099 NFKBIEO00221 500 aa10.83□□□□□ -0.68
LIG3-216ENST00000593099 PDHXO00330 501 aa10.83□□□□□ -0.68
LIG3-216ENST00000593099 GGPS1O95749 300 aa10.83□□□□□ -0.68
LIG3-216ENST00000593099 PTGS1P23219 599 aa10.83□□□□□ -0.68
LIG3-216ENST00000593099 PTPN14Q15678 1187 aa10.83□□□□□ -0.68
LIG3-216ENST00000593099 GJA10Q969M2 543 aa10.83□□□□□ -0.68
LIG3-216ENST00000593099 NLRP4Q96MN2 994 aa10.83□□□□□ -0.68
LIG3-216ENST00000593099 CALCOCO1Q9P1Z2 691 aa10.83□□□□□ -0.68
LIG3-216ENST00000593099 GABBR1Q9UBS5 961 aa10.83□□□□□ -0.68
LIG3-216ENST00000593099 CPA4Q9UI42 421 aa10.83□□□□□ -0.68
LIG3-216ENST00000593099 PCDHA10Q9Y5I2 948 aa10.83□□□□□ -0.68
LIG3-216ENST00000593099 TAF6LQ9Y6J9 622 aa10.83□□□□□ -0.68
LIG3-216ENST00000593099 TDP2O95551 362 aa10.83□□□□□ -0.68
LIG3-216ENST00000593099 GH1P01241 217 aa10.83□□□□□ -0.68
LIG3-216ENST00000593099 C6orf222P0C671 652 aaPredicted RBP10.83□□□□□ -0.68
LIG3-216ENST00000593099 CD19P15391 556 aa10.83□□□□□ -0.68
LIG3-216ENST00000593099 GUCY1A2P33402 732 aa10.83□□□□□ -0.68
LIG3-216ENST00000593099 SNX16P57768 344 aa10.83□□□□□ -0.68
LIG3-216ENST00000593099 NFX1Q12986 1120 aaKnown RBP10.83□□□□□ -0.68
LIG3-216ENST00000593099 EHBP1Q8NDI1 1231 aa10.83□□□□□ -0.68
LIG3-216ENST00000593099 ERCC4Q92889 916 aaPredicted RBP10.83□□□□□ -0.68
LIG3-216ENST00000593099 TIGD1Q96MW7 591 aa10.83□□□□□ -0.68
LIG3-216ENST00000593099 FERMT1Q9BQL6 677 aa10.83□□□□□ -0.68
LIG3-216ENST00000593099 PLVAPQ9BX97 442 aa10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms