RNA–Protein interactions for RNA: ENST00000590588.5

ZNF540-209, Transcript of zinc finger protein 540, humanhuman

TSL 3

Gene ZNF540, Length 563 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-209ENST00000590588 IL17RAQ96F46 866 aa12.97□□□□□ -0.33
ZNF540-209ENST00000590588 FSD1Q9BTV5 496 aa12.97□□□□□ -0.33
ZNF540-209ENST00000590588 TLR9Q9NR96 1032 aa12.97□□□□□ -0.33
ZNF540-209ENST00000590588 TRPC6Q9Y210 931 aa12.97□□□□□ -0.33
ZNF540-209ENST00000590588 RWDD3Q9Y3V2 267 aa12.97□□□□□ -0.33
ZNF540-209ENST00000590588 LCTP09848 1927 aa12.97□□□□□ -0.33
ZNF540-209ENST00000590588 DCHS1Q96JQ0 3298 aa12.97□□□□□ -0.33
ZNF540-209ENST00000590588 DMDP11532 3685 aa12.96□□□□□ -0.33
ZNF540-209ENST00000590588 GRM6O15303 877 aa12.96□□□□□ -0.33
ZNF540-209ENST00000590588 CTNNB1P35222 781 aa12.96□□□□□ -0.33
ZNF540-209ENST00000590588 SLC16A2P36021 539 aa12.96□□□□□ -0.33
ZNF540-209ENST00000590588 THPOP40225 353 aa12.96□□□□□ -0.33
ZNF540-209ENST00000590588 ID4P47928 161 aa12.96□□□□□ -0.33
ZNF540-209ENST00000590588 NDUFV1P49821 464 aa12.96□□□□□ -0.33
ZNF540-209ENST00000590588 KIAA0753Q2KHM9 967 aa12.96□□□□□ -0.33
ZNF540-209ENST00000590588 CCDC96Q2M329 555 aa12.96□□□□□ -0.33
ZNF540-209ENST00000590588 ERICH6BQ5W0A0 696 aa12.96□□□□□ -0.33
ZNF540-209ENST00000590588 SEPT14Q6ZU15 432 aa12.96□□□□□ -0.33
ZNF540-209ENST00000590588 ASCL5Q7RTU5 278 aa12.96□□□□□ -0.33
ZNF540-209ENST00000590588 DHX37Q8IY37 1157 aaKnown RBP12.96□□□□□ -0.33
ZNF540-209ENST00000590588 IFNL3Q8IZI9 196 aa12.96□□□□□ -0.33
ZNF540-209ENST00000590588 DCAF4Q8WV16 495 aa12.96□□□□□ -0.33
ZNF540-209ENST00000590588 WNT8BQ93098 351 aa12.96□□□□□ -0.33
ZNF540-209ENST00000590588 PPP2R3CQ969Q6 453 aa12.96□□□□□ -0.33
ZNF540-209ENST00000590588 OSBP2Q969R2 916 aa12.96□□□□□ -0.33
ZNF540-209ENST00000590588 MSLNLQ96KJ4 702 aa12.96□□□□□ -0.33
ZNF540-209ENST00000590588 EPB41L4AQ9HCS5 686 aaPredicted RBP12.96□□□□□ -0.33
ZNF540-209ENST00000590588 MTMR7Q9Y216 660 aa12.96□□□□□ -0.33
ZNF540-209ENST00000590588 MICAL3Q7RTP6 2002 aa12.95□□□□□ -0.34
ZNF540-209ENST00000590588 TSPY2A6NKD2 308 aa12.95□□□□□ -0.34
ZNF540-209ENST00000590588 HAS3O00219 553 aa12.95□□□□□ -0.34
ZNF540-209ENST00000590588 GPAA1O43292 621 aa12.95□□□□□ -0.34
ZNF540-209ENST00000590588 F2P00734 622 aa12.95□□□□□ -0.34
ZNF540-209ENST00000590588 GTF2F1P35269 517 aaKnown RBP eCLIP12.95□□□□□ -0.34
ZNF540-209ENST00000590588 ZNF200P98182 395 aaPredicted RBP12.95□□□□□ -0.34
ZNF540-209ENST00000590588 SYDE2Q5VT97 1194 aa12.95□□□□□ -0.34
ZNF540-209ENST00000590588 TTBK2Q6IQ55 1244 aa12.95□□□□□ -0.34
ZNF540-209ENST00000590588 APPBP2Q92624 585 aa12.95□□□□□ -0.34
ZNF540-209ENST00000590588 ASIC4Q96FT7 647 aa12.95□□□□□ -0.34
ZNF540-209ENST00000590588 IFIH1Q9BYX4 1025 aaKnown RBP12.95□□□□□ -0.34
ZNF540-209ENST00000590588 NACAP1Q9BZK3 213 aa12.95□□□□□ -0.34
ZNF540-209ENST00000590588 IL17RBQ9NRM6 502 aa12.95□□□□□ -0.34
ZNF540-209ENST00000590588 MYO7AQ13402 2215 aa12.94□□□□□ -0.34
ZNF540-209ENST00000590588 SPTBN4Q9H254 2564 aa12.94□□□□□ -0.34
ZNF540-209ENST00000590588 LOC101059915A0A1B0GWI6 518 aaPredicted RBP12.94□□□□□ -0.34
ZNF540-209ENST00000590588 PRR23AA6NEV1 266 aa12.94□□□□□ -0.34
ZNF540-209ENST00000590588 LINC01565O15544 149 aa12.94□□□□□ -0.34
ZNF540-209ENST00000590588 HMMRO75330 724 aa12.94□□□□□ -0.34
ZNF540-209ENST00000590588 RLBP1P12271 317 aa12.94□□□□□ -0.34
ZNF540-209ENST00000590588 RRP1P56182 461 aaKnown RBP12.94□□□□□ -0.34
ZNF540-209ENST00000590588 COASYQ13057 564 aa12.94□□□□□ -0.34
ZNF540-209ENST00000590588 LAMC2Q13753 1193 aa12.94□□□□□ -0.34
ZNF540-209ENST00000590588 SERINC5Q86VE9 423 aa12.94□□□□□ -0.34
ZNF540-209ENST00000590588 RGS22Q8NE09 1264 aa12.94□□□□□ -0.34
ZNF540-209ENST00000590588 EMID1Q96A84 441 aaPredicted RBP12.94□□□□□ -0.34
ZNF540-209ENST00000590588 RNF39Q9H2S5 420 aa12.94□□□□□ -0.34
ZNF540-209ENST00000590588 COL4A6Q14031 1691 aa12.93□□□□□ -0.34
ZNF540-209ENST00000590588 CACNA1HO95180 2353 aa12.93□□□□□ -0.34
ZNF540-209ENST00000590588 RBAK-RBAKDNI3L0D1 243 aa12.93□□□□□ -0.34
ZNF540-209ENST00000590588 RNF113AO15541 343 aaKnown RBP12.93□□□□□ -0.34
ZNF540-209ENST00000590588 GALR2O43603 387 aaPredicted RBP12.93□□□□□ -0.34
ZNF540-209ENST00000590588 PPFIA4O75335 1185 aa12.93□□□□□ -0.34
ZNF540-209ENST00000590588 MMP1P03956 469 aa12.93□□□□□ -0.34
ZNF540-209ENST00000590588 ZFYP08048 801 aaPredicted RBP12.93□□□□□ -0.34
ZNF540-209ENST00000590588 NBL1P41271 181 aa12.93□□□□□ -0.34
ZNF540-209ENST00000590588 PPARAQ07869 468 aa12.93□□□□□ -0.34
ZNF540-209ENST00000590588 STXBP2Q15833 593 aa12.93□□□□□ -0.34
ZNF540-209ENST00000590588 RASGRP2Q7LDG7 609 aa12.93□□□□□ -0.34
ZNF540-209ENST00000590588 KBTBD3Q8NAB2 608 aa12.93□□□□□ -0.34
ZNF540-209ENST00000590588 SMRP1Q8NCR6 262 aa12.93□□□□□ -0.34
ZNF540-209ENST00000590588 PPTC7Q8NI37 304 aa12.93□□□□□ -0.34
ZNF540-209ENST00000590588 APBB2Q92870 758 aa12.93□□□□□ -0.34
ZNF540-209ENST00000590588 PHF7Q9BWX1 381 aaPredicted RBP12.93□□□□□ -0.34
ZNF540-209ENST00000590588 PLVAPQ9BX97 442 aa12.93□□□□□ -0.34
ZNF540-209ENST00000590588 MAF1Q9H063 256 aa12.93□□□□□ -0.34
ZNF540-209ENST00000590588 CLEC1BQ9P126 229 aa12.93□□□□□ -0.34
ZNF540-209ENST00000590588 DDX41Q9UJV9 622 aaKnown RBP12.93□□□□□ -0.34
ZNF540-209ENST00000590588 KMT2EQ8IZD2 1858 aa12.93□□□□□ -0.34
ZNF540-209ENST00000590588 NMT2O60551 498 aa12.92□□□□□ -0.34
ZNF540-209ENST00000590588 KDM4AO75164 1064 aa12.92□□□□□ -0.34
ZNF540-209ENST00000590588 ICAM3P32942 547 aa12.92□□□□□ -0.34
ZNF540-209ENST00000590588 NOVP48745 357 aa12.92□□□□□ -0.34
ZNF540-209ENST00000590588 EFHBQ8N7U6 833 aa12.92□□□□□ -0.34
ZNF540-209ENST00000590588 NSUN6Q8TEA1 469 aaKnown RBP12.92□□□□□ -0.34
ZNF540-209ENST00000590588 CLP1Q92989 425 aaKnown RBP12.92□□□□□ -0.34
ZNF540-209ENST00000590588 RPGRIP1Q96KN7 1286 aa12.92□□□□□ -0.34
ZNF540-209ENST00000590588 RIPOR3Q96MK2 946 aa12.92□□□□□ -0.34
ZNF540-209ENST00000590588 IWS1Q96ST2 819 aa12.92□□□□□ -0.34
ZNF540-209ENST00000590588 NAPBQ9H115 298 aa12.92□□□□□ -0.34
ZNF540-209ENST00000590588 INCENPQ9NQS7 918 aa12.92□□□□□ -0.34
ZNF540-209ENST00000590588 WDR19Q8NEZ3 1342 aa12.91□□□□□ -0.34
ZNF540-209ENST00000590588 CAND2O75155 1236 aa12.91□□□□□ -0.34
ZNF540-209ENST00000590588 LINC00271P0C7V0 271 aa12.91□□□□□ -0.34
ZNF540-209ENST00000590588 ZNF286BP0CG31 522 aa12.91□□□□□ -0.34
ZNF540-209ENST00000590588 HIC1Q14526 733 aa12.91□□□□□ -0.34
ZNF540-209ENST00000590588 ATP6V0A1Q93050 837 aa12.91□□□□□ -0.34
ZNF540-209ENST00000590588 GPCPD1Q9NPB8 672 aa12.91□□□□□ -0.34
ZNF540-209ENST00000590588 PLAGL2Q9UPG8 496 aa12.91□□□□□ -0.34
ZNF540-209ENST00000590588 USP15Q9Y4E8 981 aaPredicted RBP12.91□□□□□ -0.34
ZNF540-209ENST00000590588 MYH7P12883 1935 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms