RNA–Protein interactions for RNA: ENST00000585466.1

CLIP3-202, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 2

Gene CLIP3, Length 368 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-202ENST00000585466 TELO2Q9Y4R8 837 aa17.46■□□□□ 0.39
CLIP3-202ENST00000585466 V9GY48 417 aaPredicted RBP17.46■□□□□ 0.39
CLIP3-202ENST00000585466 TRIP12Q14669 1992 aaPredicted RBP17.46■□□□□ 0.39
CLIP3-202ENST00000585466 HAS3O00219 553 aa17.45■□□□□ 0.38
CLIP3-202ENST00000585466 STAM2O75886 525 aa17.45■□□□□ 0.38
CLIP3-202ENST00000585466 GGPS1O95749 300 aa17.45■□□□□ 0.38
CLIP3-202ENST00000585466 F2P00734 622 aa17.45■□□□□ 0.38
CLIP3-202ENST00000585466 CENPBP07199 599 aaPredicted RBP17.45■□□□□ 0.38
CLIP3-202ENST00000585466 NTRK3Q16288 839 aa17.45■□□□□ 0.38
CLIP3-202ENST00000585466 RASIP1Q5U651 963 aa17.45■□□□□ 0.38
CLIP3-202ENST00000585466 KCNV1Q6PIU1 500 aa17.45■□□□□ 0.38
CLIP3-202ENST00000585466 SESTD1Q86VW0 696 aa17.45■□□□□ 0.38
CLIP3-202ENST00000585466 BUD13Q9BRD0 619 aaKnown RBP eCLIP17.45■□□□□ 0.38
CLIP3-202ENST00000585466 HIPK3Q9H422 1215 aa17.45■□□□□ 0.38
CLIP3-202ENST00000585466 TET1Q8NFU7 2136 aa17.44■□□□□ 0.38
CLIP3-202ENST00000585466 ADAMTS3O15072 1205 aa17.44■□□□□ 0.38
CLIP3-202ENST00000585466 ZNF286BP0CG31 522 aa17.44■□□□□ 0.38
CLIP3-202ENST00000585466 CYP2C9P11712 490 aa17.44■□□□□ 0.38
CLIP3-202ENST00000585466 METAP2P50579 478 aaKnown RBP eCLIP17.44■□□□□ 0.38
CLIP3-202ENST00000585466 PTPN11Q06124 597 aaPredicted RBP17.44■□□□□ 0.38
CLIP3-202ENST00000585466 PKN1Q16512 942 aa17.44■□□□□ 0.38
CLIP3-202ENST00000585466 DGKDQ16760 1214 aa17.44■□□□□ 0.38
CLIP3-202ENST00000585466 TMEM240Q5SV17 173 aa17.44■□□□□ 0.38
CLIP3-202ENST00000585466 PPP1R18Q6NYC8 613 aa17.44■□□□□ 0.38
CLIP3-202ENST00000585466 XRRA1Q6P2D8 792 aa17.44■□□□□ 0.38
CLIP3-202ENST00000585466 RUFY3Q7L099 469 aa17.44■□□□□ 0.38
CLIP3-202ENST00000585466 Q7L0L9 218 aa17.44■□□□□ 0.38
CLIP3-202ENST00000585466 DHX37Q8IY37 1157 aaKnown RBP17.44■□□□□ 0.38
CLIP3-202ENST00000585466 CUL5Q93034 780 aa17.44■□□□□ 0.38
CLIP3-202ENST00000585466 TM6SF1Q9BZW5 370 aa17.44■□□□□ 0.38
CLIP3-202ENST00000585466 RIC8AQ9NPQ8 531 aa17.44■□□□□ 0.38
CLIP3-202ENST00000585466 RTEL1Q9NZ71 1219 aa17.44■□□□□ 0.38
CLIP3-202ENST00000585466 CDH23Q9H251 3354 aa17.43■□□□□ 0.38
CLIP3-202ENST00000585466 SORBS3O60504 671 aa17.43■□□□□ 0.38
CLIP3-202ENST00000585466 ITGB5P18084 799 aa17.43■□□□□ 0.38
CLIP3-202ENST00000585466 PSMA5P28066 241 aa17.43■□□□□ 0.38
CLIP3-202ENST00000585466 CLK2P49760 499 aaKnown RBP17.43■□□□□ 0.38
CLIP3-202ENST00000585466 HIC1Q14526 733 aa17.43■□□□□ 0.38
CLIP3-202ENST00000585466 C16orf70Q9BSU1 422 aa17.43■□□□□ 0.38
CLIP3-202ENST00000585466 BARHL2Q9NY43 387 aa17.43■□□□□ 0.38
CLIP3-202ENST00000585466 UBIAD1Q9Y5Z9 338 aa17.43■□□□□ 0.38
CLIP3-202ENST00000585466 hCG_1984214I3L0E3 225 aa17.42■□□□□ 0.38
CLIP3-202ENST00000585466 FIBPO43427 364 aa17.42■□□□□ 0.38
CLIP3-202ENST00000585466 PPFIA4O75335 1185 aa17.42■□□□□ 0.38
CLIP3-202ENST00000585466 ACRP10323 421 aa17.42■□□□□ 0.38
CLIP3-202ENST00000585466 PDIA3P30101 505 aaKnown RBP17.42■□□□□ 0.38
CLIP3-202ENST00000585466 PSEN2P49810 448 aa17.42■□□□□ 0.38
CLIP3-202ENST00000585466 PPIGQ13427 754 aaKnown RBP eCLIP17.42■□□□□ 0.38
CLIP3-202ENST00000585466 PFKFB3Q16875 520 aaPredicted RBP17.42■□□□□ 0.38
CLIP3-202ENST00000585466 GNPTABQ3T906 1256 aa17.42■□□□□ 0.38
CLIP3-202ENST00000585466 GDF6Q6KF10 455 aaPredicted RBP17.42■□□□□ 0.38
CLIP3-202ENST00000585466 TMEM199Q8N511 208 aa17.42■□□□□ 0.38
CLIP3-202ENST00000585466 ZNF713Q8N859 430 aaPredicted RBP17.42■□□□□ 0.38
CLIP3-202ENST00000585466 DHX38Q92620 1227 aaKnown RBP17.42■□□□□ 0.38
CLIP3-202ENST00000585466 SPATA33Q96N06 139 aa17.42■□□□□ 0.38
CLIP3-202ENST00000585466 PCDHA6Q9UN73 950 aa17.42■□□□□ 0.38
CLIP3-202ENST00000585466 PCDHA8Q9Y5H6 950 aa17.42■□□□□ 0.38
CLIP3-202ENST00000585466 SUPT20HL2P0C7V6 817 aa17.41■□□□□ 0.38
CLIP3-202ENST00000585466 KCNA2P16389 499 aa17.41■□□□□ 0.38
CLIP3-202ENST00000585466 HOXC8P31273 242 aa17.41■□□□□ 0.38
CLIP3-202ENST00000585466 NAPAP54920 295 aa17.41■□□□□ 0.38
CLIP3-202ENST00000585466 CCL23P55773 120 aa17.41■□□□□ 0.38
CLIP3-202ENST00000585466 MFSD10Q14728 455 aa17.41■□□□□ 0.38
CLIP3-202ENST00000585466 FAM47CQ5HY64 1035 aa17.41■□□□□ 0.38
CLIP3-202ENST00000585466 FAM109BQ6ICB4 259 aaPredicted RBP17.41■□□□□ 0.38
CLIP3-202ENST00000585466 METTL7BQ6UX53 244 aa17.41■□□□□ 0.38
CLIP3-202ENST00000585466 ZNF365Q70YC5 407 aa17.41■□□□□ 0.38
CLIP3-202ENST00000585466 TEX2Q8IWB9 1127 aa17.41■□□□□ 0.38
CLIP3-202ENST00000585466 IL17RAQ96F46 866 aa17.41■□□□□ 0.38
CLIP3-202ENST00000585466 RNPC3Q96LT9 517 aaKnown RBP17.41■□□□□ 0.38
CLIP3-202ENST00000585466 SENP7Q9BQF6 1050 aa17.41■□□□□ 0.38
CLIP3-202ENST00000585466 UPF3BQ9BZI7 483 aaKnown RBP17.41■□□□□ 0.38
CLIP3-202ENST00000585466 IL23AQ9NPF7 189 aa17.41■□□□□ 0.38
CLIP3-202ENST00000585466 HDAC6Q9UBN7 1215 aa17.41■□□□□ 0.38
CLIP3-202ENST00000585466 GTF2IRD1Q9UHL9 959 aa17.41■□□□□ 0.38
CLIP3-202ENST00000585466 GBF1Q92538 1859 aa17.4■□□□□ 0.38
CLIP3-202ENST00000585466 COL6A3P12111 3177 aa17.4■□□□□ 0.38
CLIP3-202ENST00000585466 RBAK-RBAKDNI3L0D1 243 aa17.4■□□□□ 0.38
CLIP3-202ENST00000585466 PRPF3O43395 683 aaKnown RBP17.4■□□□□ 0.38
CLIP3-202ENST00000585466 ATP9AO75110 1047 aa17.4■□□□□ 0.38
CLIP3-202ENST00000585466 SCG2P13521 617 aa17.4■□□□□ 0.38
CLIP3-202ENST00000585466 SMAD3P84022 425 aaKnown RBP17.4■□□□□ 0.38
CLIP3-202ENST00000585466 FGD1P98174 961 aa17.4■□□□□ 0.38
CLIP3-202ENST00000585466 KIAA0753Q2KHM9 967 aa17.4■□□□□ 0.38
CLIP3-202ENST00000585466 CYFIP1Q7L576 1253 aa17.4■□□□□ 0.38
CLIP3-202ENST00000585466 CRYGNQ8WXF5 182 aa17.4■□□□□ 0.38
CLIP3-202ENST00000585466 GPRASP2Q96D09 838 aa17.4■□□□□ 0.38
CLIP3-202ENST00000585466 SCLYQ96I15 445 aa17.4■□□□□ 0.38
CLIP3-202ENST00000585466 PGBD1Q96JS3 809 aa17.4■□□□□ 0.38
CLIP3-202ENST00000585466 GPR20Q99678 358 aa17.4■□□□□ 0.38
CLIP3-202ENST00000585466 NCOA5Q9HCD5 579 aaKnown RBP17.4■□□□□ 0.38
CLIP3-202ENST00000585466 MTMR10Q9NXD2 777 aa17.4■□□□□ 0.38
CLIP3-202ENST00000585466 NAP1L2Q9ULW6 460 aaPredicted RBP17.4■□□□□ 0.38
CLIP3-202ENST00000585466 CCDC196A0A1B0GTZ2 297 aa17.39■□□□□ 0.37
CLIP3-202ENST00000585466 ESYT2A0FGR8 921 aa17.39■□□□□ 0.37
CLIP3-202ENST00000585466 SMCO2A6NFE2 343 aa17.39■□□□□ 0.37
CLIP3-202ENST00000585466 PITPNM1O00562 1244 aa17.39■□□□□ 0.37
CLIP3-202ENST00000585466 LGALS2P05162 132 aa17.39■□□□□ 0.37
CLIP3-202ENST00000585466 IFNAR1P17181 557 aa17.39■□□□□ 0.37
CLIP3-202ENST00000585466 ADCY7P51828 1080 aa17.39■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms