RNA–Protein interactions for RNA: ENST00000583780.1

SHMT1-210, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 332 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-210ENST00000583780 MYSM1Q5VVJ2 828 aa25.45■■□□□ 1.66
SHMT1-210ENST00000583780 FBXO11Q86XK2 927 aa25.45■■□□□ 1.66
SHMT1-210ENST00000583780 DHX37Q8IY37 1157 aaKnown RBP25.45■■□□□ 1.66
SHMT1-210ENST00000583780 DBF4BQ8NFT6 615 aa25.45■■□□□ 1.66
SHMT1-210ENST00000583780 VAT1LQ9HCJ6 419 aa25.45■■□□□ 1.66
SHMT1-210ENST00000583780 MRPL11Q9Y3B7 192 aaKnown RBP25.45■■□□□ 1.66
SHMT1-210ENST00000583780 INSL6Q9Y581 213 aa25.45■■□□□ 1.66
SHMT1-210ENST00000583780 MYO7AQ13402 2215 aa25.45■■□□□ 1.66
SHMT1-210ENST00000583780 HTRA4P83105 476 aaPredicted RBP25.44■■□□□ 1.66
SHMT1-210ENST00000583780 MRVI1Q9Y6F6 885 aa25.44■■□□□ 1.66
SHMT1-210ENST00000583780 ZNF213O14771 459 aa25.43■■□□□ 1.66
SHMT1-210ENST00000583780 KDM4AO75164 1064 aa25.43■■□□□ 1.66
SHMT1-210ENST00000583780 IL9P15248 144 aa25.43■■□□□ 1.66
SHMT1-210ENST00000583780 KCNA5P22460 613 aa25.43■■□□□ 1.66
SHMT1-210ENST00000583780 HSD17B4P51659 736 aa25.43■■□□□ 1.66
SHMT1-210ENST00000583780 SP2Q02086 613 aa25.43■■□□□ 1.66
SHMT1-210ENST00000583780 GHRHRQ02643 423 aa25.43■■□□□ 1.66
SHMT1-210ENST00000583780 HSDL1Q3SXM5 330 aa25.43■■□□□ 1.66
SHMT1-210ENST00000583780 GJD3Q8N144 294 aa25.43■■□□□ 1.66
SHMT1-210ENST00000583780 SP7Q8TDD2 431 aaPredicted RBP25.43■■□□□ 1.66
SHMT1-210ENST00000583780 ZSWIM5Q9P217 1185 aa25.43■■□□□ 1.66
SHMT1-210ENST00000583780 CFBP00751 764 aa25.42■■□□□ 1.66
SHMT1-210ENST00000583780 ASPRV1Q53RT3 343 aa25.42■■□□□ 1.66
SHMT1-210ENST00000583780 CCDC178Q5BJE1 867 aa25.42■■□□□ 1.66
SHMT1-210ENST00000583780 SERINC5Q86VE9 423 aa25.42■■□□□ 1.66
SHMT1-210ENST00000583780 ENAHQ8N8S7 591 aaPredicted RBP25.42■■□□□ 1.66
SHMT1-210ENST00000583780 C16orf70Q9BSU1 422 aa25.42■■□□□ 1.66
SHMT1-210ENST00000583780 OSBPL7Q9BZF2 842 aa25.42■■□□□ 1.66
SHMT1-210ENST00000583780 KAT14Q9H8E8 782 aa25.42■■□□□ 1.66
SHMT1-210ENST00000583780 ZBTB47Q9UFB7 747 aaPredicted RBP25.42■■□□□ 1.66
SHMT1-210ENST00000583780 PIEZO1Q92508 2521 aa25.41■■□□□ 1.66
SHMT1-210ENST00000583780 GRXCR2A6NFK2 248 aa25.41■■□□□ 1.66
SHMT1-210ENST00000583780 SDSP20132 328 aa25.41■■□□□ 1.66
SHMT1-210ENST00000583780 PLEKHG4Q58EX7 1191 aa25.41■■□□□ 1.66
SHMT1-210ENST00000583780 CELF3Q5SZQ8 465 aaKnown RBP25.41■■□□□ 1.66
SHMT1-210ENST00000583780 STOX1Q6ZVD7 989 aa25.41■■□□□ 1.66
SHMT1-210ENST00000583780 VSIG10LQ86VR7 867 aa25.41■■□□□ 1.66
SHMT1-210ENST00000583780 IQCA1Q86XH1 822 aa25.41■■□□□ 1.66
SHMT1-210ENST00000583780 FBXO22Q8NEZ5 403 aa25.41■■□□□ 1.66
SHMT1-210ENST00000583780 ZSCAN10Q96SZ4 725 aaPredicted RBP25.41■■□□□ 1.66
SHMT1-210ENST00000583780 PDCD2LQ9BRP1 358 aa25.41■■□□□ 1.66
SHMT1-210ENST00000583780 RSPH10B2B2RC85 870 aa25.4■■□□□ 1.66
SHMT1-210ENST00000583780 TRIM6-TRIM34B2RNG4 842 aa25.4■■□□□ 1.66
SHMT1-210ENST00000583780 B4E1Z4 1266 aa25.4■■□□□ 1.66
SHMT1-210ENST00000583780 RSPH10BP0C881 870 aa25.4■■□□□ 1.66
SHMT1-210ENST00000583780 STAG2Q8N3U4 1231 aa25.4■■□□□ 1.66
SHMT1-210ENST00000583780 NEK9Q8TD19 979 aa25.4■■□□□ 1.66
SHMT1-210ENST00000583780 CRBNQ96SW2 442 aa25.4■■□□□ 1.66
SHMT1-210ENST00000583780 LAMA4Q16363 1823 aa25.4■■□□□ 1.66
SHMT1-210ENST00000583780 BAZ2BQ9UIF8 2168 aaKnown RBP25.39■■□□□ 1.66
SHMT1-210ENST00000583780 PRR33A8MZF0 331 aa25.39■■□□□ 1.66
SHMT1-210ENST00000583780 SORBS3O60504 671 aa25.39■■□□□ 1.66
SHMT1-210ENST00000583780 PPP1R11O60927 126 aaPredicted RBP25.39■■□□□ 1.66
SHMT1-210ENST00000583780 PARP1P09874 1014 aaKnown RBP25.39■■□□□ 1.66
SHMT1-210ENST00000583780 MYCLP12524 364 aaPredicted RBP25.39■■□□□ 1.66
SHMT1-210ENST00000583780 HOXC8P31273 242 aa25.39■■□□□ 1.66
SHMT1-210ENST00000583780 NT5C2P49902 561 aa25.39■■□□□ 1.66
SHMT1-210ENST00000583780 PTCRAQ6ISU1 281 aaPredicted RBP25.39■■□□□ 1.66
SHMT1-210ENST00000583780 MYOCDQ8IZQ8 938 aa25.39■■□□□ 1.66
SHMT1-210ENST00000583780 RILPL2Q969X0 211 aa25.39■■□□□ 1.66
SHMT1-210ENST00000583780 MRPL38Q96DV4 380 aaKnown RBP25.39■■□□□ 1.66
SHMT1-210ENST00000583780 MTMR8Q96EF0 704 aa25.39■■□□□ 1.66
SHMT1-210ENST00000583780 BCAS3Q9H6U6 928 aa25.39■■□□□ 1.66
SHMT1-210ENST00000583780 EMSYQ7Z589 1322 aa25.38■■□□□ 1.65
SHMT1-210ENST00000583780 AMHP03971 560 aa25.38■■□□□ 1.65
SHMT1-210ENST00000583780 THPOP40225 353 aa25.38■■□□□ 1.65
SHMT1-210ENST00000583780 HDAC1Q13547 482 aaPredicted RBP25.38■■□□□ 1.65
SHMT1-210ENST00000583780 EPC2Q52LR7 807 aa25.38■■□□□ 1.65
SHMT1-210ENST00000583780 GPKOWQ92917 476 aaPredicted RBP eCLIP25.38■■□□□ 1.65
SHMT1-210ENST00000583780 TOP1MTQ969P6 601 aa25.38■■□□□ 1.65
SHMT1-210ENST00000583780 SPATA33Q96N06 139 aa25.38■■□□□ 1.65
SHMT1-210ENST00000583780 AMNQ9BXJ7 453 aa25.38■■□□□ 1.65
SHMT1-210ENST00000583780 MAP3K20Q9NYL2 800 aaKnown RBP25.38■■□□□ 1.65
SHMT1-210ENST00000583780 NLRC5Q86WI3 1866 aa25.37■■□□□ 1.65
SHMT1-210ENST00000583780 DHX16O60231 1041 aaKnown RBP25.37■■□□□ 1.65
SHMT1-210ENST00000583780 GGPS1O95749 300 aa25.37■■□□□ 1.65
SHMT1-210ENST00000583780 PGM5Q15124 567 aa25.37■■□□□ 1.65
SHMT1-210ENST00000583780 KCNV1Q6PIU1 500 aa25.37■■□□□ 1.65
SHMT1-210ENST00000583780 IL31RAQ8NI17 732 aa25.37■■□□□ 1.65
SHMT1-210ENST00000583780 ZFP91Q96JP5 570 aaPredicted RBP25.37■■□□□ 1.65
SHMT1-210ENST00000583780 H3BNC9 293 aa25.36■■□□□ 1.65
SHMT1-210ENST00000583780 MFAP1P55081 439 aaKnown RBP25.36■■□□□ 1.65
SHMT1-210ENST00000583780 RNPEPQ9H4A4 650 aa25.36■■□□□ 1.65
SHMT1-210ENST00000583780 CTNNA3Q9UI47 895 aa25.36■■□□□ 1.65
SHMT1-210ENST00000583780 LOC101059915A0A1B0GWI6 518 aaPredicted RBP25.35■■□□□ 1.65
SHMT1-210ENST00000583780 POTEB3A0JP26 581 aa25.35■■□□□ 1.65
SHMT1-210ENST00000583780 TREHO43280 583 aa25.35■■□□□ 1.65
SHMT1-210ENST00000583780 TGFB3P10600 412 aa25.35■■□□□ 1.65
SHMT1-210ENST00000583780 HOXA13P31271 388 aaPredicted RBP25.35■■□□□ 1.65
SHMT1-210ENST00000583780 COL19A1Q14993 1142 aa25.35■■□□□ 1.65
SHMT1-210ENST00000583780 POTEBQ6S5H4 581 aa25.35■■□□□ 1.65
SHMT1-210ENST00000583780 ATP6V0A1Q93050 837 aa25.35■■□□□ 1.65
SHMT1-210ENST00000583780 LNPKQ9C0E8 428 aa25.35■■□□□ 1.65
SHMT1-210ENST00000583780 DOCK5Q9H7D0 1870 aa25.34■■□□□ 1.65
SHMT1-210ENST00000583780 H3BQ06 376 aaPredicted RBP25.34■■□□□ 1.65
SHMT1-210ENST00000583780 H3BRB1 525 aa25.34■■□□□ 1.65
SHMT1-210ENST00000583780 UBA1P22314 1058 aaKnown RBP25.34■■□□□ 1.65
SHMT1-210ENST00000583780 SLC35G1Q2M3R5 365 aa25.34■■□□□ 1.65
SHMT1-210ENST00000583780 SAMD3Q8N6K7 520 aa25.34■■□□□ 1.65
SHMT1-210ENST00000583780 BANK1Q8NDB2 785 aa25.34■■□□□ 1.65
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms