RNA–Protein interactions for RNA: ENST00000583328.5

TOP3A-215, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 2

Gene TOP3A, Length 727 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-215ENST00000583328 MX1P20591 662 aa14.38□□□□□ -0.11
TOP3A-215ENST00000583328 HAND2P61296 217 aa14.38□□□□□ -0.11
TOP3A-215ENST00000583328 CDC37Q16543 378 aaPredicted RBP14.38□□□□□ -0.11
TOP3A-215ENST00000583328 TCEAL5Q5H9L2 206 aa14.38□□□□□ -0.11
TOP3A-215ENST00000583328 SP7Q8TDD2 431 aaPredicted RBP14.38□□□□□ -0.11
TOP3A-215ENST00000583328 EMID1Q96A84 441 aaPredicted RBP14.38□□□□□ -0.11
TOP3A-215ENST00000583328 PABPC5Q96DU9 382 aaKnown RBP14.38□□□□□ -0.11
TOP3A-215ENST00000583328 UPF3BQ9BZI7 483 aaKnown RBP14.38□□□□□ -0.11
TOP3A-215ENST00000583328 MRPL11Q9Y3B7 192 aaKnown RBP14.38□□□□□ -0.11
TOP3A-215ENST00000583328 COL4A4P53420 1690 aaPredicted RBP14.38□□□□□ -0.11
TOP3A-215ENST00000583328 H3BNC9 293 aa14.37□□□□□ -0.11
TOP3A-215ENST00000583328 PPFIA4O75335 1185 aa14.37□□□□□ -0.11
TOP3A-215ENST00000583328 UPP2O95045 317 aa14.37□□□□□ -0.11
TOP3A-215ENST00000583328 NR3C2P08235 984 aa14.37□□□□□ -0.11
TOP3A-215ENST00000583328 MFSD6Q6ZSS7 791 aa14.37□□□□□ -0.11
TOP3A-215ENST00000583328 TMEM192Q8IY95 271 aa14.37□□□□□ -0.11
TOP3A-215ENST00000583328 EVI5LQ96CN4 794 aa14.37□□□□□ -0.11
TOP3A-215ENST00000583328 NSUN3Q9H649 340 aaKnown RBP14.37□□□□□ -0.11
TOP3A-215ENST00000583328 CLDND1Q9NY35 253 aa14.37□□□□□ -0.11
TOP3A-215ENST00000583328 PRKAG3Q9UGI9 489 aa14.37□□□□□ -0.11
TOP3A-215ENST00000583328 SORBS3O60504 671 aa14.36□□□□□ -0.11
TOP3A-215ENST00000583328 HSPD1P10809 573 aaKnown RBP14.36□□□□□ -0.11
TOP3A-215ENST00000583328 ZP2Q05996 745 aa14.36□□□□□ -0.11
TOP3A-215ENST00000583328 HIC1Q14526 733 aa14.36□□□□□ -0.11
TOP3A-215ENST00000583328 MCMDC2Q4G0Z9 681 aa14.36□□□□□ -0.11
TOP3A-215ENST00000583328 PLEKHG4Q58EX7 1191 aa14.36□□□□□ -0.11
TOP3A-215ENST00000583328 ADHFE1Q8IWW8 467 aa14.36□□□□□ -0.11
TOP3A-215ENST00000583328 ADGRF4Q8IZF3 695 aa14.36□□□□□ -0.11
TOP3A-215ENST00000583328 SEPT8Q92599 483 aa14.36□□□□□ -0.11
TOP3A-215ENST00000583328 SPATA33Q96N06 139 aa14.36□□□□□ -0.11
TOP3A-215ENST00000583328 ZKSCAN3Q9BRR0 538 aa14.36□□□□□ -0.11
TOP3A-215ENST00000583328 ZBTB47Q9UFB7 747 aaPredicted RBP14.36□□□□□ -0.11
TOP3A-215ENST00000583328 SUPT16HQ9Y5B9 1047 aaKnown RBP14.36□□□□□ -0.11
TOP3A-215ENST00000583328 PTPRSQ13332 1948 aa14.35□□□□□ -0.11
TOP3A-215ENST00000583328 C17orf102A2RUQ5 167 aa14.35□□□□□ -0.11
TOP3A-215ENST00000583328 C19orf67A6NJJ6 358 aa14.35□□□□□ -0.11
TOP3A-215ENST00000583328 NCK2O43639 380 aa14.35□□□□□ -0.11
TOP3A-215ENST00000583328 DHX16O60231 1041 aaKnown RBP14.35□□□□□ -0.11
TOP3A-215ENST00000583328 CFBP00751 764 aa14.35□□□□□ -0.11
TOP3A-215ENST00000583328 CENPBP07199 599 aaPredicted RBP14.35□□□□□ -0.11
TOP3A-215ENST00000583328 PCP11498 1178 aaKnown RBP14.35□□□□□ -0.11
TOP3A-215ENST00000583328 MYCLP12524 364 aaPredicted RBP14.35□□□□□ -0.11
TOP3A-215ENST00000583328 MKRN4PQ13434 485 aaPredicted RBP14.35□□□□□ -0.11
TOP3A-215ENST00000583328 SERINC5Q86VE9 423 aa14.35□□□□□ -0.11
TOP3A-215ENST00000583328 FBXO11Q86XK2 927 aa14.35□□□□□ -0.11
TOP3A-215ENST00000583328 DGKHQ86XP1 1220 aa14.35□□□□□ -0.11
TOP3A-215ENST00000583328 ESR2Q92731 530 aa14.35□□□□□ -0.11
TOP3A-215ENST00000583328 ATP6V0A1Q93050 837 aa14.35□□□□□ -0.11
TOP3A-215ENST00000583328 TOP1MTQ969P6 601 aa14.35□□□□□ -0.11
TOP3A-215ENST00000583328 FAM227BQ96M60 508 aa14.35□□□□□ -0.11
TOP3A-215ENST00000583328 MFSD14AQ96MC6 490 aa14.35□□□□□ -0.11
TOP3A-215ENST00000583328 RNF41Q9H4P4 317 aaPredicted RBP14.35□□□□□ -0.11
TOP3A-215ENST00000583328 VAT1LQ9HCJ6 419 aa14.35□□□□□ -0.11
TOP3A-215ENST00000583328 PXMP2Q9NR77 195 aa14.35□□□□□ -0.11
TOP3A-215ENST00000583328 GGPS1O95749 300 aa14.34□□□□□ -0.11
TOP3A-215ENST00000583328 QRICH1Q2TAL8 776 aa14.34□□□□□ -0.11
TOP3A-215ENST00000583328 HSDL1Q3SXM5 330 aa14.34□□□□□ -0.11
TOP3A-215ENST00000583328 CELF3Q5SZQ8 465 aaKnown RBP14.34□□□□□ -0.11
TOP3A-215ENST00000583328 MYSM1Q5VVJ2 828 aa14.34□□□□□ -0.11
TOP3A-215ENST00000583328 KCNV1Q6PIU1 500 aa14.34□□□□□ -0.11
TOP3A-215ENST00000583328 HFE2Q6ZVN8 426 aa14.34□□□□□ -0.11
TOP3A-215ENST00000583328 RPAINQ86UA6 219 aa14.34□□□□□ -0.11
TOP3A-215ENST00000583328 PNMA1Q8ND90 353 aa14.34□□□□□ -0.11
TOP3A-215ENST00000583328 KAT14Q9H8E8 782 aa14.34□□□□□ -0.11
TOP3A-215ENST00000583328 A0A0D9SFI3 127 aa14.33□□□□□ -0.12
TOP3A-215ENST00000583328 HOXD8P13378 290 aaPredicted RBP14.33□□□□□ -0.12
TOP3A-215ENST00000583328 IRS1P35568 1242 aa14.33□□□□□ -0.12
TOP3A-215ENST00000583328 COL19A1Q14993 1142 aa14.33□□□□□ -0.12
TOP3A-215ENST00000583328 CLUL1Q15846 466 aa14.33□□□□□ -0.12
TOP3A-215ENST00000583328 ASPRV1Q53RT3 343 aa14.33□□□□□ -0.12
TOP3A-215ENST00000583328 CCDC178Q5BJE1 867 aa14.33□□□□□ -0.12
TOP3A-215ENST00000583328 TBC1D10CQ8IV04 446 aa14.33□□□□□ -0.12
TOP3A-215ENST00000583328 FIBCD1Q8N539 461 aa14.33□□□□□ -0.12
TOP3A-215ENST00000583328 IFIH1Q9BYX4 1025 aaKnown RBP14.33□□□□□ -0.12
TOP3A-215ENST00000583328 MLXIPQ9HAP2 919 aa14.33□□□□□ -0.12
TOP3A-215ENST00000583328 LOC101059915A0A1B0GWI6 518 aaPredicted RBP14.32□□□□□ -0.12
TOP3A-215ENST00000583328 TREHO43280 583 aa14.32□□□□□ -0.12
TOP3A-215ENST00000583328 CTSHP09668 335 aa14.32□□□□□ -0.12
TOP3A-215ENST00000583328 CTNNB1P35222 781 aa14.32□□□□□ -0.12
TOP3A-215ENST00000583328 ZNF589Q86UQ0 364 aaPredicted RBP14.32□□□□□ -0.12
TOP3A-215ENST00000583328 IQCA1Q86XH1 822 aa14.32□□□□□ -0.12
TOP3A-215ENST00000583328 ANKS1AQ92625 1134 aa14.32□□□□□ -0.12
TOP3A-215ENST00000583328 IL17RAQ96F46 866 aa14.32□□□□□ -0.12
TOP3A-215ENST00000583328 POP1Q99575 1024 aaKnown RBP14.32□□□□□ -0.12
TOP3A-215ENST00000583328 PDCD2LQ9BRP1 358 aa14.32□□□□□ -0.12
TOP3A-215ENST00000583328 C16orf70Q9BSU1 422 aa14.32□□□□□ -0.12
TOP3A-215ENST00000583328 JMJD4Q9H9V9 463 aa14.32□□□□□ -0.12
TOP3A-215ENST00000583328 PCDHB15Q9Y5E8 787 aa14.32□□□□□ -0.12
TOP3A-215ENST00000583328 ZMYM6O95789 1325 aa14.32□□□□□ -0.12
TOP3A-215ENST00000583328 H3BRB1 525 aa14.31□□□□□ -0.12
TOP3A-215ENST00000583328 CAND2O75155 1236 aa14.31□□□□□ -0.12
TOP3A-215ENST00000583328 RGS20O76081 388 aa14.31□□□□□ -0.12
TOP3A-215ENST00000583328 RB1P06400 928 aa14.31□□□□□ -0.12
TOP3A-215ENST00000583328 PARP1P09874 1014 aaKnown RBP14.31□□□□□ -0.12
TOP3A-215ENST00000583328 SMIM10L2AP0DMW4 78 aa14.31□□□□□ -0.12
TOP3A-215ENST00000583328 SMIM10L2BP0DMW5 78 aa14.31□□□□□ -0.12
TOP3A-215ENST00000583328 TGFB3P10600 412 aa14.31□□□□□ -0.12
TOP3A-215ENST00000583328 LTBRP36941 435 aa14.31□□□□□ -0.12
TOP3A-215ENST00000583328 SP2Q02086 613 aa14.31□□□□□ -0.12
TOP3A-215ENST00000583328 NMIQ13287 307 aaPredicted RBP14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms