RNA–Protein interactions for RNA: ENST00000581265.1

RFFL-209, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 4

Gene RFFL, Length 596 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-209ENST00000581265 CXCL10P02778 98 aa12.32□□□□□ -0.44
RFFL-209ENST00000581265 CKBP12277 381 aa12.32□□□□□ -0.44
RFFL-209ENST00000581265 SSTR3P32745 418 aaPredicted RBP12.32□□□□□ -0.44
RFFL-209ENST00000581265 PSEN2P49810 448 aa12.32□□□□□ -0.44
RFFL-209ENST00000581265 NHLH1Q02575 133 aa12.32□□□□□ -0.44
RFFL-209ENST00000581265 TRAF1Q13077 416 aa12.32□□□□□ -0.44
RFFL-209ENST00000581265 MYSM1Q5VVJ2 828 aa12.32□□□□□ -0.44
RFFL-209ENST00000581265 CYB5R4Q7L1T6 521 aa12.32□□□□□ -0.44
RFFL-209ENST00000581265 LRRC8DQ7L1W4 858 aa12.32□□□□□ -0.44
RFFL-209ENST00000581265 DHX37Q8IY37 1157 aaKnown RBP12.32□□□□□ -0.44
RFFL-209ENST00000581265 KATNAL1Q9BW62 490 aa12.32□□□□□ -0.44
RFFL-209ENST00000581265 RIOX1Q9H6W3 641 aa12.32□□□□□ -0.44
RFFL-209ENST00000581265 LAMA4Q16363 1823 aa12.32□□□□□ -0.44
RFFL-209ENST00000581265 MUC3AQ02505 3323 aa12.32□□□□□ -0.44
RFFL-209ENST00000581265 KIAA1217Q5T5P2 1943 aa12.31□□□□□ -0.44
RFFL-209ENST00000581265 ABHD14A-ACY1A0A1B0GW23 586 aa12.31□□□□□ -0.44
RFFL-209ENST00000581265 EPOPA6NHQ4 379 aa12.31□□□□□ -0.44
RFFL-209ENST00000581265 NBNO60934 754 aa12.31□□□□□ -0.44
RFFL-209ENST00000581265 ARHGEF15O94989 841 aa12.31□□□□□ -0.44
RFFL-209ENST00000581265 MYCLP12524 364 aaPredicted RBP12.31□□□□□ -0.44
RFFL-209ENST00000581265 ALADP13716 330 aa12.31□□□□□ -0.44
RFFL-209ENST00000581265 KCNJ6P48051 423 aa12.31□□□□□ -0.44
RFFL-209ENST00000581265 WDR5P61964 334 aaKnown RBP12.31□□□□□ -0.44
RFFL-209ENST00000581265 TRDNQ13061 729 aa12.31□□□□□ -0.44
RFFL-209ENST00000581265 PTK7Q13308 1070 aa12.31□□□□□ -0.44
RFFL-209ENST00000581265 MFSD10Q14728 455 aa12.31□□□□□ -0.44
RFFL-209ENST00000581265 KIAA0753Q2KHM9 967 aa12.31□□□□□ -0.44
RFFL-209ENST00000581265 SLC35G1Q2M3R5 365 aa12.31□□□□□ -0.44
RFFL-209ENST00000581265 CELF3Q5SZQ8 465 aaKnown RBP12.31□□□□□ -0.44
RFFL-209ENST00000581265 CNKSR3Q6P9H4 555 aa12.31□□□□□ -0.44
RFFL-209ENST00000581265 ARNTL2Q8WYA1 636 aa12.31□□□□□ -0.44
RFFL-209ENST00000581265 U3KPZ7 1027 aaPredicted RBP12.31□□□□□ -0.44
RFFL-209ENST00000581265 GCOM1H8Y6P7 765 aaPredicted RBP12.3□□□□□ -0.44
RFFL-209ENST00000581265 CYP21A2P08686 494 aa12.3□□□□□ -0.44
RFFL-209ENST00000581265 POLR2MP0CAP2 368 aa12.3□□□□□ -0.44
RFFL-209ENST00000581265 HOXA13P31271 388 aaPredicted RBP12.3□□□□□ -0.44
RFFL-209ENST00000581265 SP2Q02086 613 aa12.3□□□□□ -0.44
RFFL-209ENST00000581265 TROAPQ12815 778 aa12.3□□□□□ -0.44
RFFL-209ENST00000581265 GRM4Q14833 912 aa12.3□□□□□ -0.44
RFFL-209ENST00000581265 PGM5Q15124 567 aa12.3□□□□□ -0.44
RFFL-209ENST00000581265 TRIM71Q2Q1W2 868 aaKnown RBP12.3□□□□□ -0.44
RFFL-209ENST00000581265 HSDL1Q3SXM5 330 aa12.3□□□□□ -0.44
RFFL-209ENST00000581265 TRAF7Q6Q0C0 670 aa12.3□□□□□ -0.44
RFFL-209ENST00000581265 SPATA33Q96N06 139 aa12.3□□□□□ -0.44
RFFL-209ENST00000581265 PIGSQ96S52 555 aa12.3□□□□□ -0.44
RFFL-209ENST00000581265 ALG1Q9BT22 464 aa12.3□□□□□ -0.44
RFFL-209ENST00000581265 MYH6P13533 1939 aa12.3□□□□□ -0.44
RFFL-209ENST00000581265 PNMA6FA0A0J9YX94 578 aa12.29□□□□□ -0.44
RFFL-209ENST00000581265 IFIT3O14879 490 aaKnown RBP12.29□□□□□ -0.44
RFFL-209ENST00000581265 CYTH3O43739 400 aa12.29□□□□□ -0.44
RFFL-209ENST00000581265 LPXNO60711 386 aa12.29□□□□□ -0.44
RFFL-209ENST00000581265 EFCAB14O75071 495 aa12.29□□□□□ -0.44
RFFL-209ENST00000581265 GJB5O95377 273 aa12.29□□□□□ -0.44
RFFL-209ENST00000581265 GGPS1O95749 300 aa12.29□□□□□ -0.44
RFFL-209ENST00000581265 ZNF286BP0CG31 522 aa12.29□□□□□ -0.44
RFFL-209ENST00000581265 GSPT1P15170 499 aaKnown RBP12.29□□□□□ -0.44
RFFL-209ENST00000581265 PDE4AP27815 886 aa12.29□□□□□ -0.44
RFFL-209ENST00000581265 CCND2P30279 289 aa12.29□□□□□ -0.44
RFFL-209ENST00000581265 ZNF200P98182 395 aaPredicted RBP12.29□□□□□ -0.44
RFFL-209ENST00000581265 IKBKEQ14164 716 aa12.29□□□□□ -0.44
RFFL-209ENST00000581265 TTC22Q5TAA0 569 aa12.29□□□□□ -0.44
RFFL-209ENST00000581265 KRT40Q6A162 431 aa12.29□□□□□ -0.44
RFFL-209ENST00000581265 GJD3Q8N144 294 aa12.29□□□□□ -0.44
RFFL-209ENST00000581265 IL31RAQ8NI17 732 aa12.29□□□□□ -0.44
RFFL-209ENST00000581265 RUFY2Q8WXA3 655 aa12.29□□□□□ -0.44
RFFL-209ENST00000581265 RAD9AQ99638 391 aa12.29□□□□□ -0.44
RFFL-209ENST00000581265 C16orf70Q9BSU1 422 aa12.29□□□□□ -0.44
RFFL-209ENST00000581265 ZBED2Q9BTP6 218 aa12.29□□□□□ -0.44
RFFL-209ENST00000581265 KCNH6Q9H252 994 aa12.29□□□□□ -0.44
RFFL-209ENST00000581265 TRANK1O15050 2925 aa12.29□□□□□ -0.44
RFFL-209ENST00000581265 BAZ2BQ9UIF8 2168 aaKnown RBP12.28□□□□□ -0.44
RFFL-209ENST00000581265 TANC1Q9C0D5 1861 aa12.28□□□□□ -0.44
RFFL-209ENST00000581265 PIEZO1Q92508 2521 aa12.28□□□□□ -0.44
RFFL-209ENST00000581265 ERICH2A1L162 156 aa12.28□□□□□ -0.44
RFFL-209ENST00000581265 LCHNA4D1U4 455 aa12.28□□□□□ -0.44
RFFL-209ENST00000581265 UBA1P22314 1058 aaKnown RBP12.28□□□□□ -0.44
RFFL-209ENST00000581265 CHMLP26374 656 aa12.28□□□□□ -0.44
RFFL-209ENST00000581265 DEFB103AP81534 67 aa12.28□□□□□ -0.44
RFFL-209ENST00000581265 PTH1RQ03431 593 aa12.28□□□□□ -0.44
RFFL-209ENST00000581265 GRB10Q13322 594 aa12.28□□□□□ -0.44
RFFL-209ENST00000581265 HIC1Q14526 733 aa12.28□□□□□ -0.44
RFFL-209ENST00000581265 MBTPS1Q14703 1052 aa12.28□□□□□ -0.44
RFFL-209ENST00000581265 TCTN1Q2MV58 587 aa12.28□□□□□ -0.44
RFFL-209ENST00000581265 ZNF618Q5T7W0 954 aa12.28□□□□□ -0.44
RFFL-209ENST00000581265 SERINC5Q86VE9 423 aa12.28□□□□□ -0.44
RFFL-209ENST00000581265 HOMER1Q86YM7 354 aa12.28□□□□□ -0.44
RFFL-209ENST00000581265 NCOA7Q8NI08 942 aa12.28□□□□□ -0.44
RFFL-209ENST00000581265 WNT8BQ93098 351 aa12.28□□□□□ -0.44
RFFL-209ENST00000581265 FBXL18Q96ME1 805 aa12.28□□□□□ -0.44
RFFL-209ENST00000581265 YTHDC1Q96MU7 727 aaKnown RBP12.28□□□□□ -0.44
RFFL-209ENST00000581265 MLXIPQ9HAP2 919 aa12.28□□□□□ -0.44
RFFL-209ENST00000581265 SENP2Q9HC62 589 aa12.28□□□□□ -0.44
RFFL-209ENST00000581265 CD320Q9NPF0 282 aa12.28□□□□□ -0.44
RFFL-209ENST00000581265 LMCD1Q9NZU5 365 aa12.28□□□□□ -0.44
RFFL-209ENST00000581265 MYH7BA7E2Y1 1941 aa12.27□□□□□ -0.44
RFFL-209ENST00000581265 MUC6Q6W4X9 2439 aa12.27□□□□□ -0.44
RFFL-209ENST00000581265 SPATA31C2B4DYI2 1134 aa12.27□□□□□ -0.45
RFFL-209ENST00000581265 E7EWF7 191 aa12.27□□□□□ -0.45
RFFL-209ENST00000581265 H3BRB1 525 aa12.27□□□□□ -0.45
RFFL-209ENST00000581265 LGR5O75473 907 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 69.4 ms