RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 VWA3AA6NCI4 1184 aa12.14□□□□□ -0.47
SS18-213ENST00000579640 MSH4O15457 936 aa12.14□□□□□ -0.47
SS18-213ENST00000579640 GNRH1P01148 92 aa12.14□□□□□ -0.47
SS18-213ENST00000579640 ICAM3P32942 547 aa12.14□□□□□ -0.47
SS18-213ENST00000579640 ARHGEF6Q15052 776 aa12.14□□□□□ -0.47
SS18-213ENST00000579640 SLC5A5Q92911 643 aa12.14□□□□□ -0.47
SS18-213ENST00000579640 ERO1AQ96HE7 468 aa12.14□□□□□ -0.47
SS18-213ENST00000579640 MAML3Q96JK9 1138 aa12.14□□□□□ -0.47
SS18-213ENST00000579640 AK8Q96MA6 479 aa12.14□□□□□ -0.47
SS18-213ENST00000579640 APBA2Q99767 749 aa12.14□□□□□ -0.47
SS18-213ENST00000579640 KCNH7Q9NS40 1196 aa12.14□□□□□ -0.47
SS18-213ENST00000579640 GJD2Q9UKL4 321 aa12.14□□□□□ -0.47
SS18-213ENST00000579640 MRVI1Q9Y6F6 885 aa12.14□□□□□ -0.47
SS18-213ENST00000579640 SYNGAP1Q96PV0 1343 aa12.13□□□□□ -0.47
SS18-213ENST00000579640 FKTNO75072 461 aa12.13□□□□□ -0.47
SS18-213ENST00000579640 MBD3O95983 291 aa12.13□□□□□ -0.47
SS18-213ENST00000579640 ARP10275 920 aa12.13□□□□□ -0.47
SS18-213ENST00000579640 CMA1P23946 247 aa12.13□□□□□ -0.47
SS18-213ENST00000579640 HOXD10P28358 340 aa12.13□□□□□ -0.47
SS18-213ENST00000579640 TXKP42681 527 aa12.13□□□□□ -0.47
SS18-213ENST00000579640 IRF5Q13568 498 aa12.13□□□□□ -0.47
SS18-213ENST00000579640 PDIA5Q14554 519 aa12.13□□□□□ -0.47
SS18-213ENST00000579640 KCNV1Q6PIU1 500 aa12.13□□□□□ -0.47
SS18-213ENST00000579640 ARMCX2Q7L311 632 aa12.13□□□□□ -0.47
SS18-213ENST00000579640 TRIM47Q96LD4 638 aa12.13□□□□□ -0.47
SS18-213ENST00000579640 RIT2Q99578 217 aa12.13□□□□□ -0.47
SS18-213ENST00000579640 ZNF577Q9BSK1 485 aa12.13□□□□□ -0.47
SS18-213ENST00000579640 WDR11Q9BZH6 1224 aa12.13□□□□□ -0.47
SS18-213ENST00000579640 TTC12Q9H892 705 aaPredicted RBP12.13□□□□□ -0.47
SS18-213ENST00000579640 AGO4Q9HCK5 861 aaKnown RBP12.13□□□□□ -0.47
SS18-213ENST00000579640 TBC1D22BQ9NU19 505 aa12.13□□□□□ -0.47
SS18-213ENST00000579640 PCDHA12Q9UN75 941 aa12.13□□□□□ -0.47
SS18-213ENST00000579640 DOCK3Q8IZD9 2030 aa12.12□□□□□ -0.47
SS18-213ENST00000579640 IPO5O00410 1097 aaKnown RBP12.12□□□□□ -0.47
SS18-213ENST00000579640 GADD45BO75293 160 aaPredicted RBP12.12□□□□□ -0.47
SS18-213ENST00000579640 TGFB3P10600 412 aa12.12□□□□□ -0.47
SS18-213ENST00000579640 XRCC5P13010 732 aaKnown RBP12.12□□□□□ -0.47
SS18-213ENST00000579640 CTGFP29279 349 aa12.12□□□□□ -0.47
SS18-213ENST00000579640 IL17AQ16552 155 aa12.12□□□□□ -0.47
SS18-213ENST00000579640 OLFML2BQ68BL8 750 aa12.12□□□□□ -0.47
SS18-213ENST00000579640 NPLOC4Q8TAT6 608 aa12.12□□□□□ -0.47
SS18-213ENST00000579640 MRPS27Q92552 414 aaKnown RBP12.12□□□□□ -0.47
SS18-213ENST00000579640 ZFP91Q96JP5 570 aaPredicted RBP12.12□□□□□ -0.47
SS18-213ENST00000579640 CLIC6Q96NY7 704 aa12.12□□□□□ -0.47
SS18-213ENST00000579640 TINF2Q9BSI4 451 aa12.12□□□□□ -0.47
SS18-213ENST00000579640 CSRNP2Q9H175 543 aa12.12□□□□□ -0.47
SS18-213ENST00000579640 VTA1Q9NP79 307 aa12.12□□□□□ -0.47
SS18-213ENST00000579640 FAM13BQ9NYF5 915 aa12.12□□□□□ -0.47
SS18-213ENST00000579640 STK24Q9Y6E0 443 aa12.12□□□□□ -0.47
SS18-213ENST00000579640 SPATA31C2B4DYI2 1134 aa12.11□□□□□ -0.47
SS18-213ENST00000579640 RGS20O76081 388 aa12.11□□□□□ -0.47
SS18-213ENST00000579640 TECP42680 631 aa12.11□□□□□ -0.47
SS18-213ENST00000579640 SKOR2Q2VWA4 1001 aaPredicted RBP12.11□□□□□ -0.47
SS18-213ENST00000579640 KIAA1217Q5T5P2 1943 aa12.11□□□□□ -0.47
SS18-213ENST00000579640 LRCH2Q5VUJ6 765 aa12.11□□□□□ -0.47
SS18-213ENST00000579640 RESP18Q5W5W9 173 aa12.11□□□□□ -0.47
SS18-213ENST00000579640 TRMT44Q8IYL2 757 aaKnown RBP12.11□□□□□ -0.47
SS18-213ENST00000579640 IGSF22Q8N9C0 903 aa12.11□□□□□ -0.47
SS18-213ENST00000579640 SENP7Q9BQF6 1050 aa12.11□□□□□ -0.47
SS18-213ENST00000579640 TEKT3Q9BXF9 490 aa12.11□□□□□ -0.47
SS18-213ENST00000579640 ARHGAP39Q9C0H5 1083 aa12.11□□□□□ -0.47
SS18-213ENST00000579640 WBP1LQ9NX94 342 aa12.11□□□□□ -0.47
SS18-213ENST00000579640 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.11□□□□□ -0.47
SS18-213ENST00000579640 CASP8AP2Q9UKL3 1982 aa12.11□□□□□ -0.47
SS18-213ENST00000579640 NFASCO94856 1347 aa12.11□□□□□ -0.47
SS18-213ENST00000579640 FAM237AA0A1B0GTK4 181 aa12.11□□□□□ -0.47
SS18-213ENST00000579640 SLC26A4O43511 780 aa12.11□□□□□ -0.47
SS18-213ENST00000579640 GAS7O60861 476 aa12.11□□□□□ -0.47
SS18-213ENST00000579640 PSMD10O75832 226 aa12.11□□□□□ -0.47
SS18-213ENST00000579640 ECM2O94769 699 aaPredicted RBP12.11□□□□□ -0.47
SS18-213ENST00000579640 CYP2B6P20813 491 aa12.11□□□□□ -0.47
SS18-213ENST00000579640 TXLNAP40222 546 aa12.11□□□□□ -0.47
SS18-213ENST00000579640 GRIN1Q05586 938 aa12.11□□□□□ -0.47
SS18-213ENST00000579640 PPP2R5CQ13362 524 aa12.11□□□□□ -0.47
SS18-213ENST00000579640 SHC4Q6S5L8 630 aa12.11□□□□□ -0.47
SS18-213ENST00000579640 CCDC73Q6ZRK6 1079 aa12.11□□□□□ -0.47
SS18-213ENST00000579640 SEPT14Q6ZU15 432 aa12.11□□□□□ -0.47
SS18-213ENST00000579640 DNAJC5GQ8N7S2 189 aa12.11□□□□□ -0.47
SS18-213ENST00000579640 FSIP1Q8NA03 581 aa12.11□□□□□ -0.47
SS18-213ENST00000579640 GIMAP8Q8ND71 665 aaPredicted RBP12.11□□□□□ -0.47
SS18-213ENST00000579640 CD99L2Q8TCZ2 262 aa12.11□□□□□ -0.47
SS18-213ENST00000579640 SDF4Q9BRK5 362 aa12.11□□□□□ -0.47
SS18-213ENST00000579640 LRWD1Q9UFC0 647 aa12.11□□□□□ -0.47
SS18-213ENST00000579640 TCEAL9Q9UHQ7 104 aa12.11□□□□□ -0.47
SS18-213ENST00000579640 PRMT2P55345 433 aa12.1□□□□□ -0.47
SS18-213ENST00000579640 SEMA3FQ13275 785 aa12.1□□□□□ -0.47
SS18-213ENST00000579640 OTOP1Q7RTM1 612 aa12.1□□□□□ -0.47
SS18-213ENST00000579640 ERMNQ8TAM6 284 aa12.1□□□□□ -0.47
SS18-213ENST00000579640 PYM1Q9BRP8 204 aaKnown RBP12.1□□□□□ -0.47
SS18-213ENST00000579640 ABHD16BQ9H3Z7 469 aa12.1□□□□□ -0.47
SS18-213ENST00000579640 VAV3Q9UKW4 847 aa12.1□□□□□ -0.47
SS18-213ENST00000579640 MCM3APO60318 1980 aa12.1□□□□□ -0.47
SS18-213ENST00000579640 ZSWIM8A7E2V4 1837 aa12.09□□□□□ -0.47
SS18-213ENST00000579640 RBM47A0AV96 593 aaKnown RBP12.09□□□□□ -0.47
SS18-213ENST00000579640 DHX15O43143 795 aaKnown RBP12.09□□□□□ -0.47
SS18-213ENST00000579640 SNAI1O95863 264 aaPredicted RBP12.09□□□□□ -0.47
SS18-213ENST00000579640 KCNA2P16389 499 aa12.09□□□□□ -0.47
SS18-213ENST00000579640 UBA7P41226 1012 aa12.09□□□□□ -0.47
SS18-213ENST00000579640 FLT3LGP49771 235 aa12.09□□□□□ -0.47
SS18-213ENST00000579640 KRT76Q01546 638 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms