RNA–Protein interactions for RNA: ENST00000579061.5

SS18-212, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-212ENST00000579061 UBA1P22314 1058 aaKnown RBP17.04■□□□□ 0.32
SS18-212ENST00000579061 SP2Q02086 613 aa17.04■□□□□ 0.32
SS18-212ENST00000579061 PPIGQ13427 754 aaKnown RBP eCLIP17.04■□□□□ 0.324e-6■■□□□ 13.5
SS18-212ENST00000579061 TMEM199Q8N511 208 aa17.04■□□□□ 0.32
SS18-212ENST00000579061 SENP7Q9BQF6 1050 aa17.04■□□□□ 0.32
SS18-212ENST00000579061 EHMT1Q9H9B1 1298 aa17.04■□□□□ 0.32
SS18-212ENST00000579061 DOCK5Q9H7D0 1870 aa17.03■□□□□ 0.32
SS18-212ENST00000579061 STXBP3O00186 592 aa17.03■□□□□ 0.32
SS18-212ENST00000579061 FOSP01100 380 aaPredicted RBP17.03■□□□□ 0.32
SS18-212ENST00000579061 NEDD9Q14511 834 aa17.03■□□□□ 0.32
SS18-212ENST00000579061 SHHQ15465 462 aa17.03■□□□□ 0.32
SS18-212ENST00000579061 UBE2SQ16763 222 aa17.03■□□□□ 0.32
SS18-212ENST00000579061 PFKFB3Q16875 520 aaPredicted RBP17.03■□□□□ 0.32
SS18-212ENST00000579061 TYW1BQ6NUM6 668 aa17.03■□□□□ 0.32
SS18-212ENST00000579061 NLRX1Q86UT6 975 aa17.03■□□□□ 0.32
SS18-212ENST00000579061 SESTD1Q86VW0 696 aa17.03■□□□□ 0.32
SS18-212ENST00000579061 KAT2BQ92831 832 aa17.03■□□□□ 0.32
SS18-212ENST00000579061 SPATA33Q96N06 139 aa17.03■□□□□ 0.32
SS18-212ENST00000579061 KATNAL1Q9BW62 490 aa17.03■□□□□ 0.32
SS18-212ENST00000579061 PPP1R12CQ9BZL4 782 aa17.03■□□□□ 0.32
SS18-212ENST00000579061 TRPV6Q9H1D0 765 aa17.03■□□□□ 0.32
SS18-212ENST00000579061 HIPK3Q9H422 1215 aa17.03■□□□□ 0.32
SS18-212ENST00000579061 MLXIPQ9HAP2 919 aa17.03■□□□□ 0.32
SS18-212ENST00000579061 PCDHA6Q9UN73 950 aa17.03■□□□□ 0.32
SS18-212ENST00000579061 PCDHA8Q9Y5H6 950 aa17.03■□□□□ 0.32
SS18-212ENST00000579061 PRPF3O43395 683 aaKnown RBP17.02■□□□□ 0.32
SS18-212ENST00000579061 PDIA3P30101 505 aaKnown RBP17.02■□□□□ 0.32
SS18-212ENST00000579061 ADCY7P51828 1080 aa17.02■□□□□ 0.32
SS18-212ENST00000579061 ANAPC15P60006 121 aa17.02■□□□□ 0.32
SS18-212ENST00000579061 SEMA3FQ13275 785 aa17.02■□□□□ 0.32
SS18-212ENST00000579061 TOB2Q14106 344 aaPredicted RBP17.02■□□□□ 0.32
SS18-212ENST00000579061 NTRK3Q16288 839 aa17.02■□□□□ 0.32
SS18-212ENST00000579061 FAM47CQ5HY64 1035 aa17.02■□□□□ 0.32
SS18-212ENST00000579061 C9orf50Q5SZB4 431 aa17.02■□□□□ 0.32
SS18-212ENST00000579061 GIMAP8Q8ND71 665 aaPredicted RBP17.02■□□□□ 0.32
SS18-212ENST00000579061 GPRASP2Q96D09 838 aa17.02■□□□□ 0.32
SS18-212ENST00000579061 ZNF274Q96GC6 653 aaPredicted RBP17.02■□□□□ 0.32
SS18-212ENST00000579061 LRCH3Q96II8 777 aa17.02■□□□□ 0.32
SS18-212ENST00000579061 ZFP91Q96JP5 570 aaPredicted RBP17.02■□□□□ 0.32
SS18-212ENST00000579061 CDHR1Q96JP9 859 aa17.02■□□□□ 0.32
SS18-212ENST00000579061 NOC4LQ9BVI4 516 aaKnown RBP17.02■□□□□ 0.32
SS18-212ENST00000579061 RNF26Q9BY78 433 aaPredicted RBP17.02■□□□□ 0.32
SS18-212ENST00000579061 RTEL1Q9NZ71 1219 aa17.02■□□□□ 0.32
SS18-212ENST00000579061 SZT2Q5T011 3432 aa17.02■□□□□ 0.31
SS18-212ENST00000579061 ESYT2A0FGR8 921 aa17.01■□□□□ 0.31
SS18-212ENST00000579061 SMCO2A6NFE2 343 aa17.01■□□□□ 0.31
SS18-212ENST00000579061 HAS3O00219 553 aa17.01■□□□□ 0.31
SS18-212ENST00000579061 MAFGO15525 162 aa17.01■□□□□ 0.31
SS18-212ENST00000579061 F2P00734 622 aa17.01■□□□□ 0.31
SS18-212ENST00000579061 SCG2P13521 617 aa17.01■□□□□ 0.31
SS18-212ENST00000579061 IFNAR1P17181 557 aa17.01■□□□□ 0.31
SS18-212ENST00000579061 CYP2C18P33260 490 aa17.01■□□□□ 0.31
SS18-212ENST00000579061 EPHB4P54760 987 aa17.01■□□□□ 0.31
SS18-212ENST00000579061 AKAP17AQ02040 695 aaKnown RBP17.01■□□□□ 0.31
SS18-212ENST00000579061 AP3B2Q13367 1082 aa17.01■□□□□ 0.31
SS18-212ENST00000579061 HSDL1Q3SXM5 330 aa17.01■□□□□ 0.31
SS18-212ENST00000579061 METTL7BQ6UX53 244 aa17.01■□□□□ 0.31
SS18-212ENST00000579061 CCDC12Q8WUD4 166 aaPredicted RBP17.01■□□□□ 0.31
SS18-212ENST00000579061 TRMT13Q9NUP7 481 aaKnown RBP17.01■□□□□ 0.31
SS18-212ENST00000579061 UBIAD1Q9Y5Z9 338 aa17.01■□□□□ 0.31
SS18-212ENST00000579061 TRIP12Q14669 1992 aaPredicted RBP17■□□□□ 0.31
SS18-212ENST00000579061 LAMA2P24043 3122 aaKnown RBP17■□□□□ 0.31
SS18-212ENST00000579061 CLK2P49760 499 aaKnown RBP17■□□□□ 0.31
SS18-212ENST00000579061 PSEN2P49810 448 aa17■□□□□ 0.31
SS18-212ENST00000579061 PKN1Q16512 942 aa17■□□□□ 0.31
SS18-212ENST00000579061 MCTP2Q6DN12 878 aa17■□□□□ 0.31
SS18-212ENST00000579061 IL17RAQ96F46 866 aa17■□□□□ 0.31
SS18-212ENST00000579061 PDRG1Q9NUG6 133 aa17■□□□□ 0.31
SS18-212ENST00000579061 PITPNM1O00562 1244 aa16.99■□□□□ 0.31
SS18-212ENST00000579061 CSF2RAP15509 400 aa16.99■□□□□ 0.31
SS18-212ENST00000579061 ITGB5P18084 799 aa16.99■□□□□ 0.31
SS18-212ENST00000579061 MFSD10Q14728 455 aa16.99■□□□□ 0.31
SS18-212ENST00000579061 PSRC1Q6PGN9 363 aaPredicted RBP16.99■□□□□ 0.31
SS18-212ENST00000579061 CYFIP1Q7L576 1253 aa16.99■□□□□ 0.31
SS18-212ENST00000579061 RNPC3Q96LT9 517 aaKnown RBP16.99■□□□□ 0.31
SS18-212ENST00000579061 UPF3BQ9BZI7 483 aaKnown RBP16.99■□□□□ 0.31
SS18-212ENST00000579061 ZMYND12Q9H0C1 365 aa16.99■□□□□ 0.31
SS18-212ENST00000579061 IL23AQ9NPF7 189 aa16.99■□□□□ 0.31
SS18-212ENST00000579061 GTF2IRD1Q9UHL9 959 aa16.99■□□□□ 0.31
SS18-212ENST00000579061 UMODL1Q5DID0 1318 aa16.98■□□□□ 0.31
SS18-212ENST00000579061 KAT6AQ92794 2004 aa16.98■□□□□ 0.31
SS18-212ENST00000579061 NOP56O00567 594 aaKnown RBP16.98■□□□□ 0.31
SS18-212ENST00000579061 CYP2C9P11712 490 aa16.98■□□□□ 0.31
SS18-212ENST00000579061 CCT2P78371 535 aaKnown RBP16.98■□□□□ 0.31
SS18-212ENST00000579061 BFSP2Q13515 415 aa16.98■□□□□ 0.31
SS18-212ENST00000579061 KIAA0753Q2KHM9 967 aa16.98■□□□□ 0.31
SS18-212ENST00000579061 TMEM240Q5SV17 173 aa16.98■□□□□ 0.31
SS18-212ENST00000579061 C16orf59Q7L2K0 433 aa16.98■□□□□ 0.31
SS18-212ENST00000579061 BUD13Q9BRD0 619 aaKnown RBP eCLIP16.98■□□□□ 0.31
SS18-212ENST00000579061 C16orf70Q9BSU1 422 aa16.98■□□□□ 0.31
SS18-212ENST00000579061 ANO3Q9BYT9 981 aa16.98■□□□□ 0.31
SS18-212ENST00000579061 WNT8AQ9H1J5 351 aa16.98■□□□□ 0.31
SS18-212ENST00000579061 BCAS3Q9H6U6 928 aa16.98■□□□□ 0.31
SS18-212ENST00000579061 C6orf50Q9HD87 102 aa16.98■□□□□ 0.31
SS18-212ENST00000579061 JADE2Q9NQC1 790 aa16.98■□□□□ 0.31
SS18-212ENST00000579061 HDAC6Q9UBN7 1215 aa16.98■□□□□ 0.31
SS18-212ENST00000579061 TANC1Q9C0D5 1861 aa16.97■□□□□ 0.31
SS18-212ENST00000579061 LGALS2P05162 132 aa16.97■□□□□ 0.31
SS18-212ENST00000579061 ZNF286BP0CG31 522 aa16.97■□□□□ 0.31
SS18-212ENST00000579061 KCNA2P16389 499 aa16.97■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms