RNA–Protein interactions for RNA: ENST00000578044.5

SMARCE1-213, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 1 (best) BASIC

Gene SMARCE1, Length 1,184 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-213ENST00000578044 CXXC1Q9P0U4 656 aaPredicted RBP16.76■□□□□ 0.27
SMARCE1-213ENST00000578044 SH2B2O14492 632 aaPredicted RBP16.75■□□□□ 0.27
SMARCE1-213ENST00000578044 HOXC8P31273 242 aa16.75■□□□□ 0.27
SMARCE1-213ENST00000578044 FAM47CQ5HY64 1035 aa16.75■□□□□ 0.27
SMARCE1-213ENST00000578044 RNF20Q5VTR2 975 aa16.75■□□□□ 0.27
SMARCE1-213ENST00000578044 OTOP2Q7RTS6 562 aa16.75■□□□□ 0.27
SMARCE1-213ENST00000578044 HOMER1Q86YM7 354 aa16.75■□□□□ 0.27
SMARCE1-213ENST00000578044 NOD1Q9Y239 953 aa16.75■□□□□ 0.27
SMARCE1-213ENST00000578044 KAT6AQ92794 2004 aa16.75■□□□□ 0.27
SMARCE1-213ENST00000578044 SLC27A2O14975 620 aa16.74■□□□□ 0.27
SMARCE1-213ENST00000578044 PRC1O43663 620 aa16.74■□□□□ 0.27
SMARCE1-213ENST00000578044 EFCAB14O75071 495 aa16.74■□□□□ 0.27
SMARCE1-213ENST00000578044 CXCL10P02778 98 aa16.74■□□□□ 0.27
SMARCE1-213ENST00000578044 POU3F3P20264 500 aaPredicted RBP16.74■□□□□ 0.27
SMARCE1-213ENST00000578044 RCAN1P53805 252 aa16.74■□□□□ 0.27
SMARCE1-213ENST00000578044 PTK7Q13308 1070 aa16.74■□□□□ 0.27
SMARCE1-213ENST00000578044 NEDD9Q14511 834 aa16.74■□□□□ 0.27
SMARCE1-213ENST00000578044 PCNX4Q63HM2 1172 aa16.74■□□□□ 0.27
SMARCE1-213ENST00000578044 GIMAP8Q8ND71 665 aaPredicted RBP16.74■□□□□ 0.27
SMARCE1-213ENST00000578044 SCLYQ96I15 445 aa16.74■□□□□ 0.27
SMARCE1-213ENST00000578044 SLC28A3Q9HAS3 691 aa16.74■□□□□ 0.27
SMARCE1-213ENST00000578044 SEC63Q9UGP8 760 aaKnown RBP16.74■□□□□ 0.27
SMARCE1-213ENST00000578044 SPATA31C2B4DYI2 1134 aa16.73■□□□□ 0.27
SMARCE1-213ENST00000578044 FIBPO43427 364 aa16.73■□□□□ 0.27
SMARCE1-213ENST00000578044 CAND2O75155 1236 aa16.73■□□□□ 0.27
SMARCE1-213ENST00000578044 SELPP16109 830 aa16.73■□□□□ 0.27
SMARCE1-213ENST00000578044 ATP2A2P16615 1042 aaKnown RBP16.73■□□□□ 0.27
SMARCE1-213ENST00000578044 UBA1P22314 1058 aaKnown RBP16.73■□□□□ 0.27
SMARCE1-213ENST00000578044 HOXA13P31271 388 aaPredicted RBP16.73■□□□□ 0.27
SMARCE1-213ENST00000578044 PSEN2P49810 448 aa16.73■□□□□ 0.27
SMARCE1-213ENST00000578044 CREB3L3Q68CJ9 461 aa16.73■□□□□ 0.27
SMARCE1-213ENST00000578044 GDF6Q6KF10 455 aaPredicted RBP16.73■□□□□ 0.27
SMARCE1-213ENST00000578044 METTL7BQ6UX53 244 aa16.73■□□□□ 0.27
SMARCE1-213ENST00000578044 C7orf31Q8N865 590 aa16.73■□□□□ 0.27
SMARCE1-213ENST00000578044 GAS2L1Q99501 681 aaPredicted RBP16.73■□□□□ 0.27
SMARCE1-213ENST00000578044 USP26Q9BXU7 913 aa16.73■□□□□ 0.27
SMARCE1-213ENST00000578044 CCDC69A6NI79 296 aa16.72■□□□□ 0.27
SMARCE1-213ENST00000578044 GRXCR1A8MXD5 290 aa16.72■□□□□ 0.27
SMARCE1-213ENST00000578044 MEIS2O14770 477 aa16.72■□□□□ 0.27
SMARCE1-213ENST00000578044 MAFGO15525 162 aa16.72■□□□□ 0.27
SMARCE1-213ENST00000578044 GGPS1O95749 300 aa16.72■□□□□ 0.27
SMARCE1-213ENST00000578044 MYCLP12524 364 aaPredicted RBP16.72■□□□□ 0.27
SMARCE1-213ENST00000578044 PBX2P40425 430 aa16.72■□□□□ 0.27
SMARCE1-213ENST00000578044 IRX6P78412 446 aaPredicted RBP16.72■□□□□ 0.27
SMARCE1-213ENST00000578044 MRPS9P82933 396 aaKnown RBP16.72■□□□□ 0.27
SMARCE1-213ENST00000578044 MFSD10Q14728 455 aa16.72■□□□□ 0.27
SMARCE1-213ENST00000578044 KIAA0753Q2KHM9 967 aa16.72■□□□□ 0.27
SMARCE1-213ENST00000578044 HSDL1Q3SXM5 330 aa16.72■□□□□ 0.27
SMARCE1-213ENST00000578044 CHST3Q7LGC8 479 aa16.72■□□□□ 0.27
SMARCE1-213ENST00000578044 IL31RAQ8NI17 732 aa16.72■□□□□ 0.27
SMARCE1-213ENST00000578044 CUL5Q93034 780 aa16.72■□□□□ 0.27
SMARCE1-213ENST00000578044 CDHR1Q96JP9 859 aa16.72■□□□□ 0.27
SMARCE1-213ENST00000578044 SPATA33Q96N06 139 aa16.72■□□□□ 0.27
SMARCE1-213ENST00000578044 C16orf70Q9BSU1 422 aa16.72■□□□□ 0.27
SMARCE1-213ENST00000578044 SPTBN5Q9NRC6 3674 aaKnown RBP16.72■□□□□ 0.27
SMARCE1-213ENST00000578044 MUC3AQ02505 3323 aa16.72■□□□□ 0.27
SMARCE1-213ENST00000578044 SP2Q02086 613 aa16.71■□□□□ 0.27
SMARCE1-213ENST00000578044 KRT32Q14532 448 aa16.71■□□□□ 0.27
SMARCE1-213ENST00000578044 LRRC8DQ7L1W4 858 aa16.71■□□□□ 0.27
SMARCE1-213ENST00000578044 SRBD1Q8N5C6 995 aaKnown RBP16.71■□□□□ 0.27
SMARCE1-213ENST00000578044 FANCBQ8NB91 859 aa16.71■□□□□ 0.27
SMARCE1-213ENST00000578044 HDAC6Q9UBN7 1215 aa16.71■□□□□ 0.27
SMARCE1-213ENST00000578044 SLC12A7Q9Y666 1083 aa16.71■□□□□ 0.27
SMARCE1-213ENST00000578044 EMSYQ7Z589 1322 aa16.7■□□□□ 0.26
SMARCE1-213ENST00000578044 ABHD14A-ACY1A0A1B0GW23 586 aa16.7■□□□□ 0.26
SMARCE1-213ENST00000578044 hCG_1984214I3L0E3 225 aa16.7■□□□□ 0.26
SMARCE1-213ENST00000578044 HMGB1P09429 215 aaKnown RBP16.7■□□□□ 0.26
SMARCE1-213ENST00000578044 CKBP12277 381 aa16.7■□□□□ 0.26
SMARCE1-213ENST00000578044 TRIM71Q2Q1W2 868 aaKnown RBP16.7■□□□□ 0.26
SMARCE1-213ENST00000578044 CNKSR3Q6P9H4 555 aa16.7■□□□□ 0.26
SMARCE1-213ENST00000578044 SERINC5Q86VE9 423 aa16.7■□□□□ 0.26
SMARCE1-213ENST00000578044 FCHSD1Q86WN1 690 aa16.7■□□□□ 0.26
SMARCE1-213ENST00000578044 ZNF713Q8N859 430 aaPredicted RBP16.7■□□□□ 0.26
SMARCE1-213ENST00000578044 DHX38Q92620 1227 aaKnown RBP16.7■□□□□ 0.26
SMARCE1-213ENST00000578044 SYMPKQ92797 1274 aaKnown RBP16.7■□□□□ 0.26
SMARCE1-213ENST00000578044 GPRASP2Q96D09 838 aa16.7■□□□□ 0.26
SMARCE1-213ENST00000578044 MLXIPQ9HAP2 919 aa16.7■□□□□ 0.26
SMARCE1-213ENST00000578044 ANO2Q9NQ90 1003 aa16.7■□□□□ 0.26
SMARCE1-213ENST00000578044 RBM28Q9NW13 759 aaKnown RBP16.7■□□□□ 0.26
SMARCE1-213ENST00000578044 YBX2Q9Y2T7 364 aaKnown RBP16.7■□□□□ 0.26
SMARCE1-213ENST00000578044 PRRC2BQ5JSZ5 2229 aaKnown RBP16.69■□□□□ 0.26
SMARCE1-213ENST00000578044 KIF28PB7ZC32 967 aa16.69■□□□□ 0.26
SMARCE1-213ENST00000578044 H3BRB1 525 aa16.69■□□□□ 0.26
SMARCE1-213ENST00000578044 GPNMBQ14956 572 aa16.69■□□□□ 0.26
SMARCE1-213ENST00000578044 NFXL1Q6ZNB6 911 aa16.69■□□□□ 0.26
SMARCE1-213ENST00000578044 FAM43BQ6ZT52 329 aaPredicted RBP16.69■□□□□ 0.26
SMARCE1-213ENST00000578044 TMTC3Q6ZXV5 915 aa16.69■□□□□ 0.26
SMARCE1-213ENST00000578044 NLRX1Q86UT6 975 aa16.69■□□□□ 0.26
SMARCE1-213ENST00000578044 FBXL16Q8N461 479 aa16.69■□□□□ 0.26
SMARCE1-213ENST00000578044 SMARCC2Q8TAQ2 1214 aa16.69■□□□□ 0.26
SMARCE1-213ENST00000578044 TUT1Q9H6E5 874 aaKnown RBP16.69■□□□□ 0.26
SMARCE1-213ENST00000578044 PSTPIP2Q9H939 334 aa16.69■□□□□ 0.26
SMARCE1-213ENST00000578044 ZBBXA8MT70 800 aa16.68■□□□□ 0.26
SMARCE1-213ENST00000578044 EPB41L2O43491 1005 aaKnown RBP16.68■□□□□ 0.26
SMARCE1-213ENST00000578044 GNAT1P11488 350 aa16.68■□□□□ 0.26
SMARCE1-213ENST00000578044 EXOSC10Q01780 885 aaKnown RBP16.68■□□□□ 0.26
SMARCE1-213ENST00000578044 SEMA3FQ13275 785 aa16.68■□□□□ 0.26
SMARCE1-213ENST00000578044 PPP1R18Q6NYC8 613 aa16.68■□□□□ 0.26
SMARCE1-213ENST00000578044 TRAF7Q6Q0C0 670 aa16.68■□□□□ 0.26
SMARCE1-213ENST00000578044 APOA5Q6Q788 366 aa16.68■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms