RNA–Protein interactions for RNA: ENST00000577636.5

SS18-207, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-207ENST00000577636 SEC23AQ15436 765 aa11.65□□□□□ -0.54
SS18-207ENST00000577636 KLHL40Q2TBA0 621 aa11.65□□□□□ -0.54
SS18-207ENST00000577636 TMEM63BQ5T3F8 832 aa11.65□□□□□ -0.54
SS18-207ENST00000577636 ATL3Q6DD88 541 aa11.65□□□□□ -0.54
SS18-207ENST00000577636 FERMT3Q86UX7 667 aa11.65□□□□□ -0.54
SS18-207ENST00000577636 FBXO16Q8IX29 292 aaPredicted RBP11.65□□□□□ -0.54
SS18-207ENST00000577636 SLC43A3Q8NBI5 491 aa11.65□□□□□ -0.54
SS18-207ENST00000577636 SYAP1Q96A49 352 aaPredicted RBP11.65□□□□□ -0.54
SS18-207ENST00000577636 TRERF1Q96PN7 1200 aa11.65□□□□□ -0.54
SS18-207ENST00000577636 ALG1Q9BT22 464 aa11.65□□□□□ -0.54
SS18-207ENST00000577636 MYL10Q9BUA6 226 aa11.65□□□□□ -0.54
SS18-207ENST00000577636 SLC26A6Q9BXS9 759 aa11.65□□□□□ -0.54
SS18-207ENST00000577636 WNT8AQ9H1J5 351 aa11.65□□□□□ -0.54
SS18-207ENST00000577636 A1CFQ9NQ94 594 aaKnown RBP11.65□□□□□ -0.54
SS18-207ENST00000577636 TCP11L1Q9NUJ3 509 aa11.65□□□□□ -0.54
SS18-207ENST00000577636 MTMR4Q9NYA4 1195 aa11.65□□□□□ -0.54
SS18-207ENST00000577636 GNEQ9Y223 722 aaKnown RBP11.65□□□□□ -0.54
SS18-207ENST00000577636 TTC28Q96AY4 2481 aa11.65□□□□□ -0.54
SS18-207ENST00000577636 PARP14Q460N5 1801 aa11.65□□□□□ -0.55
SS18-207ENST00000577636 TCF20Q9UGU0 1960 aaKnown RBP11.65□□□□□ -0.55
SS18-207ENST00000577636 IGKV6D-41A0A0C4DH26 115 aa11.64□□□□□ -0.55
SS18-207ENST00000577636 DEXIO95424 95 aa11.64□□□□□ -0.55
SS18-207ENST00000577636 TTLL1O95922 423 aa11.64□□□□□ -0.55
SS18-207ENST00000577636 GNAQP50148 359 aa11.64□□□□□ -0.55
SS18-207ENST00000577636 STAT2P52630 851 aa11.64□□□□□ -0.55
SS18-207ENST00000577636 OAZ1P54368 228 aa11.64□□□□□ -0.55
SS18-207ENST00000577636 TTLL4Q14679 1199 aa11.64□□□□□ -0.55
SS18-207ENST00000577636 AAK1Q2M2I8 961 aa11.64□□□□□ -0.55
SS18-207ENST00000577636 KRT40Q6A162 431 aa11.64□□□□□ -0.55
SS18-207ENST00000577636 IQSEC1Q6DN90 963 aa11.64□□□□□ -0.55
SS18-207ENST00000577636 BRAPQ7Z569 592 aa11.64□□□□□ -0.55
SS18-207ENST00000577636 FAM133AQ8N9E0 248 aa11.64□□□□□ -0.55
SS18-207ENST00000577636 PPP1R13LQ8WUF5 828 aa11.64□□□□□ -0.55
SS18-207ENST00000577636 CHURC1Q8WUH1 139 aa11.64□□□□□ -0.55
SS18-207ENST00000577636 MKL1Q969V6 931 aa11.64□□□□□ -0.55
SS18-207ENST00000577636 PURBQ96QR8 312 aaKnown RBP11.64□□□□□ -0.55
SS18-207ENST00000577636 C1QTNF1Q9BXJ1 281 aa11.64□□□□□ -0.55
SS18-207ENST00000577636 SENP2Q9HC62 589 aa11.64□□□□□ -0.55
SS18-207ENST00000577636 LMBRD1Q9NUN5 540 aa11.64□□□□□ -0.55
SS18-207ENST00000577636 STX8Q9UNK0 236 aa11.64□□□□□ -0.55
SS18-207ENST00000577636 PCDHA11Q9Y5I1 949 aa11.64□□□□□ -0.55
SS18-207ENST00000577636 MUC3AQ02505 3323 aa11.63□□□□□ -0.55
SS18-207ENST00000577636 FIBPO43427 364 aa11.63□□□□□ -0.55
SS18-207ENST00000577636 CA3P07451 260 aa11.63□□□□□ -0.55
SS18-207ENST00000577636 MYL3P08590 195 aa11.63□□□□□ -0.55
SS18-207ENST00000577636 CDC27P30260 824 aa11.63□□□□□ -0.55
SS18-207ENST00000577636 SLC1A4P43007 532 aa11.63□□□□□ -0.55
SS18-207ENST00000577636 FOSBP53539 338 aa11.63□□□□□ -0.55
SS18-207ENST00000577636 CHMP4BP1P59074 171 aa11.63□□□□□ -0.55
SS18-207ENST00000577636 DNM1Q05193 864 aaKnown RBP11.63□□□□□ -0.55
SS18-207ENST00000577636 MUM1L1Q5H9M0 696 aa11.63□□□□□ -0.55
SS18-207ENST00000577636 FAM47CQ5HY64 1035 aa11.63□□□□□ -0.55
SS18-207ENST00000577636 NSMFQ6X4W1 530 aa11.63□□□□□ -0.55
SS18-207ENST00000577636 KCTD1Q719H9 257 aa11.63□□□□□ -0.55
SS18-207ENST00000577636 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.63□□□□□ -0.55
SS18-207ENST00000577636 FAM160B2Q86V87 743 aa11.63□□□□□ -0.55
SS18-207ENST00000577636 TMEM87AQ8NBN3 555 aa11.63□□□□□ -0.55
SS18-207ENST00000577636 FBXO18Q8NFZ0 1043 aa11.63□□□□□ -0.55
SS18-207ENST00000577636 NEDD1Q8NHV4 660 aa11.63□□□□□ -0.55
SS18-207ENST00000577636 ARNTL2Q8WYA1 636 aa11.63□□□□□ -0.55
SS18-207ENST00000577636 ANKS1AQ92625 1134 aa11.63□□□□□ -0.55
SS18-207ENST00000577636 MAP3K14Q99558 947 aa11.63□□□□□ -0.55
SS18-207ENST00000577636 LZTS2Q9BRK4 669 aa11.63□□□□□ -0.55
SS18-207ENST00000577636 RNF26Q9BY78 433 aaPredicted RBP11.63□□□□□ -0.55
SS18-207ENST00000577636 FTOQ9C0B1 505 aaKnown RBP eCLIP11.63□□□□□ -0.55
SS18-207ENST00000577636 EPHX3Q9H6B9 360 aa11.63□□□□□ -0.55
SS18-207ENST00000577636 TRMT13Q9NUP7 481 aaKnown RBP11.63□□□□□ -0.55
SS18-207ENST00000577636 MTCH2Q9Y6C9 303 aa11.63□□□□□ -0.55
SS18-207ENST00000577636 DTNBO60941 627 aa11.62□□□□□ -0.55
SS18-207ENST00000577636 FDX1P10109 184 aa11.62□□□□□ -0.55
SS18-207ENST00000577636 FDPSP14324 419 aaKnown RBP11.62□□□□□ -0.55
SS18-207ENST00000577636 NKX3-2P78367 333 aa11.62□□□□□ -0.55
SS18-207ENST00000577636 RESTQ13127 1097 aa11.62□□□□□ -0.55
SS18-207ENST00000577636 TAPT1Q6NXT6 567 aa11.62□□□□□ -0.55
SS18-207ENST00000577636 PNMA1Q8ND90 353 aa11.62□□□□□ -0.55
SS18-207ENST00000577636 GMCL1P1Q8NEA9 526 aa11.62□□□□□ -0.55
SS18-207ENST00000577636 PHKBQ93100 1093 aa11.62□□□□□ -0.55
SS18-207ENST00000577636 SPATA32Q96LK8 384 aa11.62□□□□□ -0.55
SS18-207ENST00000577636 GZF1Q9H116 711 aaPredicted RBP11.62□□□□□ -0.55
SS18-207ENST00000577636 BRMS1Q9HCU9 246 aa11.62□□□□□ -0.55
SS18-207ENST00000577636 MCM3APO60318 1980 aa11.61□□□□□ -0.55
SS18-207ENST00000577636 EPOPA6NHQ4 379 aa11.61□□□□□ -0.55
SS18-207ENST00000577636 PPFIA3O75145 1194 aa11.61□□□□□ -0.55
SS18-207ENST00000577636 SUPT20HL2P0C7V6 817 aa11.61□□□□□ -0.55
SS18-207ENST00000577636 TOP1P11387 765 aaKnown RBP11.61□□□□□ -0.55
SS18-207ENST00000577636 ACTN1P12814 892 aa11.61□□□□□ -0.55
SS18-207ENST00000577636 UBE2HP62256 183 aa11.61□□□□□ -0.55
SS18-207ENST00000577636 GUCY1B3Q02153 619 aa11.61□□□□□ -0.55
SS18-207ENST00000577636 TROAPQ12815 778 aa11.61□□□□□ -0.55
SS18-207ENST00000577636 NTRK3Q16288 839 aa11.61□□□□□ -0.55
SS18-207ENST00000577636 TKFCQ3LXA3 575 aa11.61□□□□□ -0.55
SS18-207ENST00000577636 RETREG2Q8NC44 543 aa11.61□□□□□ -0.55
SS18-207ENST00000577636 LRFN3Q9BTN0 628 aa11.61□□□□□ -0.55
SS18-207ENST00000577636 SEZ6LQ9BYH1 1024 aa11.61□□□□□ -0.55
SS18-207ENST00000577636 WDR11Q9BZH6 1224 aa11.61□□□□□ -0.55
SS18-207ENST00000577636 CCPG1Q9ULG6 757 aa11.61□□□□□ -0.55
SS18-207ENST00000577636 ZNF536O15090 1300 aa11.6□□□□□ -0.55
SS18-207ENST00000577636 KIF28PB7ZC32 967 aa11.6□□□□□ -0.55
SS18-207ENST00000577636 PRPF3O43395 683 aaKnown RBP11.6□□□□□ -0.55
SS18-207ENST00000577636 NMT2O60551 498 aa11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms