RNA–Protein interactions for RNA: ENST00000575513.1

CIITA-210, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 516 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-210ENST00000575513 ITGA7Q13683 1181 aa15.55■□□□□ 0.08
CIITA-210ENST00000575513 NEDD9Q14511 834 aa15.55■□□□□ 0.08
CIITA-210ENST00000575513 DGKDQ16760 1214 aa15.55■□□□□ 0.08
CIITA-210ENST00000575513 UBE2SQ16763 222 aa15.55■□□□□ 0.08
CIITA-210ENST00000575513 DHX37Q8IY37 1157 aaKnown RBP15.55■□□□□ 0.08
CIITA-210ENST00000575513 GIMAP8Q8ND71 665 aaPredicted RBP15.55■□□□□ 0.08
CIITA-210ENST00000575513 BICD2Q8TD16 824 aa15.55■□□□□ 0.08
CIITA-210ENST00000575513 AFG1LQ8WV93 481 aa15.55■□□□□ 0.08
CIITA-210ENST00000575513 GPRASP2Q96D09 838 aa15.55■□□□□ 0.08
CIITA-210ENST00000575513 GDF15Q99988 308 aa15.55■□□□□ 0.08
CIITA-210ENST00000575513 LARP6Q9BRS8 491 aaKnown RBP15.55■□□□□ 0.08
CIITA-210ENST00000575513 ZMYND8Q9ULU4 1186 aaPredicted RBP15.55■□□□□ 0.08
CIITA-210ENST00000575513 A0A1W2PPC1 479 aa15.54■□□□□ 0.08
CIITA-210ENST00000575513 KIAA0355O15063 1070 aa15.54■□□□□ 0.08
CIITA-210ENST00000575513 MMP3P08254 477 aa15.54■□□□□ 0.08
CIITA-210ENST00000575513 MYL3P08590 195 aa15.54■□□□□ 0.08
CIITA-210ENST00000575513 SP2Q02086 613 aa15.54■□□□□ 0.08
CIITA-210ENST00000575513 FAAP100Q0VG06 881 aa15.54■□□□□ 0.08
CIITA-210ENST00000575513 SCRN1Q12765 414 aa15.54■□□□□ 0.08
CIITA-210ENST00000575513 STK3Q13188 491 aa15.54■□□□□ 0.08
CIITA-210ENST00000575513 C22orf23Q9BZE7 217 aa15.54■□□□□ 0.08
CIITA-210ENST00000575513 PDLIM7Q9NR12 457 aa15.54■□□□□ 0.08
CIITA-210ENST00000575513 RTEL1Q9NZ71 1219 aa15.54■□□□□ 0.08
CIITA-210ENST00000575513 UBIAD1Q9Y5Z9 338 aa15.54■□□□□ 0.08
CIITA-210ENST00000575513 ALPK3Q96L96 1907 aa15.54■□□□□ 0.08
CIITA-210ENST00000575513 GRIN2DO15399 1336 aa15.53■□□□□ 0.08
CIITA-210ENST00000575513 TLR3O15455 904 aaKnown RBP15.53■□□□□ 0.08
CIITA-210ENST00000575513 PQBP1O60828 265 aaKnown RBP15.53■□□□□ 0.08
CIITA-210ENST00000575513 CD4P01730 458 aa15.53■□□□□ 0.08
CIITA-210ENST00000575513 SYN1P17600 705 aa15.53■□□□□ 0.08
CIITA-210ENST00000575513 UBA1P22314 1058 aaKnown RBP15.53■□□□□ 0.08
CIITA-210ENST00000575513 SREBF1P36956 1147 aa15.53■□□□□ 0.08
CIITA-210ENST00000575513 PTPN11Q06124 597 aaPredicted RBP15.53■□□□□ 0.08
CIITA-210ENST00000575513 GALNT17Q6IS24 598 aa15.53■□□□□ 0.08
CIITA-210ENST00000575513 NFRKBQ6P4R8 1299 aa15.53■□□□□ 0.08
CIITA-210ENST00000575513 METTL7BQ6UX53 244 aa15.53■□□□□ 0.08
CIITA-210ENST00000575513 FAM126BQ8IXS8 530 aa15.53■□□□□ 0.08
CIITA-210ENST00000575513 ANO3Q9BYT9 981 aa15.53■□□□□ 0.08
CIITA-210ENST00000575513 BACH2Q9BYV9 841 aa15.53■□□□□ 0.08
CIITA-210ENST00000575513 MLXIPQ9HAP2 919 aa15.53■□□□□ 0.08
CIITA-210ENST00000575513 JADE2Q9NQC1 790 aa15.53■□□□□ 0.08
CIITA-210ENST00000575513 COLQQ9Y215 455 aaPredicted RBP15.53■□□□□ 0.08
CIITA-210ENST00000575513 STK36Q9NRP7 1315 aa15.52■□□□□ 0.08
CIITA-210ENST00000575513 GGPS1O95749 300 aa15.52■□□□□ 0.08
CIITA-210ENST00000575513 CYP3A4P08684 503 aa15.52■□□□□ 0.08
CIITA-210ENST00000575513 ITGB5P18084 799 aa15.52■□□□□ 0.08
CIITA-210ENST00000575513 MAGEA10P43363 369 aaPredicted RBP15.52■□□□□ 0.08
CIITA-210ENST00000575513 SEMA3FQ13275 785 aa15.52■□□□□ 0.08
CIITA-210ENST00000575513 CHRDL2Q6WN34 429 aa15.52■□□□□ 0.08
CIITA-210ENST00000575513 REXO1Q8N1G1 1221 aaKnown RBP15.52■□□□□ 0.08
CIITA-210ENST00000575513 SPATA33Q96N06 139 aa15.52■□□□□ 0.08
CIITA-210ENST00000575513 KIF2CQ99661 725 aa15.52■□□□□ 0.08
CIITA-210ENST00000575513 LBHD1Q9BQE6 289 aaPredicted RBP15.52■□□□□ 0.08
CIITA-210ENST00000575513 UPF2Q9HAU5 1272 aaKnown RBP15.52■□□□□ 0.08
CIITA-210ENST00000575513 TMEM39AQ9NV64 488 aa15.52■□□□□ 0.08
CIITA-210ENST00000575513 KIAA1217Q5T5P2 1943 aa15.51■□□□□ 0.07
CIITA-210ENST00000575513 TRIM43BA6NCK2 446 aa15.51■□□□□ 0.07
CIITA-210ENST00000575513 SUPT20HL2P0C7V6 817 aa15.51■□□□□ 0.07
CIITA-210ENST00000575513 MTMR1Q13613 665 aa15.51■□□□□ 0.07
CIITA-210ENST00000575513 ME3Q16798 604 aa15.51■□□□□ 0.07
CIITA-210ENST00000575513 HSDL1Q3SXM5 330 aa15.51■□□□□ 0.07
CIITA-210ENST00000575513 CEP55Q53EZ4 464 aa15.51■□□□□ 0.07
CIITA-210ENST00000575513 NIPA1Q7RTP0 329 aa15.51■□□□□ 0.07
CIITA-210ENST00000575513 SESTD1Q86VW0 696 aa15.51■□□□□ 0.07
CIITA-210ENST00000575513 CRYGNQ8WXF5 182 aa15.51■□□□□ 0.07
CIITA-210ENST00000575513 GTF3C6Q969F1 213 aa15.51■□□□□ 0.07
CIITA-210ENST00000575513 TRIM43Q96BQ3 446 aaPredicted RBP15.51■□□□□ 0.07
CIITA-210ENST00000575513 ZFP91Q96JP5 570 aaPredicted RBP15.51■□□□□ 0.07
CIITA-210ENST00000575513 MXRA8Q9BRK3 442 aa15.51■□□□□ 0.07
CIITA-210ENST00000575513 KATNAL1Q9BW62 490 aa15.51■□□□□ 0.07
CIITA-210ENST00000575513 TBX21Q9UL17 535 aa15.51■□□□□ 0.07
CIITA-210ENST00000575513 LIMCH1Q9UPQ0 1083 aa15.51■□□□□ 0.07
CIITA-210ENST00000575513 MEIS1O00470 390 aa15.5■□□□□ 0.07
CIITA-210ENST00000575513 PPFIA3O75145 1194 aa15.5■□□□□ 0.07
CIITA-210ENST00000575513 XBP1P17861 261 aa15.5■□□□□ 0.07
CIITA-210ENST00000575513 NLRP5P59047 1200 aa15.5■□□□□ 0.07
CIITA-210ENST00000575513 PSMC6P62333 389 aa15.5■□□□□ 0.07
CIITA-210ENST00000575513 ARHGAP4P98171 946 aa15.5■□□□□ 0.07
CIITA-210ENST00000575513 NBPF20Q3BBV1 942 aa15.5■□□□□ 0.07
CIITA-210ENST00000575513 HABP4Q5JVS0 413 aaKnown RBP15.5■□□□□ 0.07
CIITA-210ENST00000575513 JAKMIP3Q5VZ66 844 aa15.5■□□□□ 0.07
CIITA-210ENST00000575513 CYFIP1Q7L576 1253 aa15.5■□□□□ 0.07
CIITA-210ENST00000575513 SH3RF1Q7Z6J0 888 aa15.5■□□□□ 0.07
CIITA-210ENST00000575513 DAGLBQ8NCG7 672 aa15.5■□□□□ 0.07
CIITA-210ENST00000575513 WASF1Q92558 559 aa15.5■□□□□ 0.07
CIITA-210ENST00000575513 KAT2BQ92831 832 aa15.5■□□□□ 0.07
CIITA-210ENST00000575513 PRDM5Q9NQX1 630 aaPredicted RBP15.5■□□□□ 0.07
CIITA-210ENST00000575513 KCNH7Q9NS40 1196 aa15.5■□□□□ 0.07
CIITA-210ENST00000575513 TMEM260Q9NX78 707 aa15.5■□□□□ 0.07
CIITA-210ENST00000575513 VPS54Q9P1Q0 977 aa15.5■□□□□ 0.07
CIITA-210ENST00000575513 PCDHA4Q9UN74 947 aa15.5■□□□□ 0.07
CIITA-210ENST00000575513 RANBP2P49792 3224 aaKnown RBP15.5■□□□□ 0.07
CIITA-210ENST00000575513 HAS3O00219 553 aa15.49■□□□□ 0.07
CIITA-210ENST00000575513 NOP56O00567 594 aaKnown RBP15.49■□□□□ 0.07
CIITA-210ENST00000575513 CTDNEP1O95476 244 aa15.49■□□□□ 0.07
CIITA-210ENST00000575513 F2P00734 622 aa15.49■□□□□ 0.07
CIITA-210ENST00000575513 TIMP1P01033 207 aa15.49■□□□□ 0.07
CIITA-210ENST00000575513 RAG1P15918 1043 aa15.49■□□□□ 0.07
CIITA-210ENST00000575513 KCNA2P16389 499 aa15.49■□□□□ 0.07
CIITA-210ENST00000575513 ZSCAN31Q96LW9 406 aaPredicted RBP15.49■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms