RNA–Protein interactions for RNA: ENST00000574867.5

NUP88-210, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 2,081 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-210ENST00000574867 DDX25Q9UHL0 483 aaKnown RBP19.4■□□□□ 0.7
NUP88-210ENST00000574867 CIZ1Q9ULV3 898 aaPredicted RBP19.4■□□□□ 0.7
NUP88-210ENST00000574867 SPATA31C2B4DYI2 1134 aa19.39■□□□□ 0.69
NUP88-210ENST00000574867 NKRFO15226 690 aaKnown RBP eCLIP19.39■□□□□ 0.69
NUP88-210ENST00000574867 MSCO60682 206 aa19.39■□□□□ 0.69
NUP88-210ENST00000574867 ADCYAP1R1P41586 468 aa19.39■□□□□ 0.69
NUP88-210ENST00000574867 PRR16Q569H4 304 aa19.39■□□□□ 0.69
NUP88-210ENST00000574867 TTC38Q5R3I4 469 aa19.39■□□□□ 0.69
NUP88-210ENST00000574867 CYP2W1Q8TAV3 490 aa19.39■□□□□ 0.69
NUP88-210ENST00000574867 LENG9Q96B70 501 aa19.39■□□□□ 0.69
NUP88-210ENST00000574867 PDGFCQ9NRA1 345 aa19.39■□□□□ 0.69
NUP88-210ENST00000574867 KCNH7Q9NS40 1196 aa19.39■□□□□ 0.69
NUP88-210ENST00000574867 CNGA1P29973 690 aa19.39■□□□□ 0.69
NUP88-210ENST00000574867 CCND3P30281 292 aaPredicted RBP19.39■□□□□ 0.69
NUP88-210ENST00000574867 TXNP10599 105 aaKnown RBP19.38■□□□□ 0.69
NUP88-210ENST00000574867 TNFAIP2Q03169 654 aa19.38■□□□□ 0.69
NUP88-210ENST00000574867 DUSP28Q4G0W2 176 aa19.38■□□□□ 0.69
NUP88-210ENST00000574867 CCDC62Q6P9F0 684 aa19.38■□□□□ 0.69
NUP88-210ENST00000574867 XRN2Q9H0D6 950 aaKnown RBP eCLIP19.38■□□□□ 0.69
NUP88-210ENST00000574867 ATP2B1P20020 1258 aa19.37■□□□□ 0.69
NUP88-210ENST00000574867 TOB1P50616 345 aaPredicted RBP19.37■□□□□ 0.69
NUP88-210ENST00000574867 SEMA3FQ13275 785 aa19.37■□□□□ 0.69
NUP88-210ENST00000574867 GIMAP8Q8ND71 665 aaPredicted RBP19.37■□□□□ 0.69
NUP88-210ENST00000574867 SENP7Q9BQF6 1050 aa19.37■□□□□ 0.69
NUP88-210ENST00000574867 DDX20Q9UHI6 824 aaKnown RBP19.37■□□□□ 0.69
NUP88-210ENST00000574867 DDX41Q9UJV9 622 aaKnown RBP19.37■□□□□ 0.69
NUP88-210ENST00000574867 FRMPD3Q5JV73 1810 aa19.37■□□□□ 0.69
NUP88-210ENST00000574867 NEMFO60524 1076 aa19.37■□□□□ 0.69
NUP88-210ENST00000574867 ARIH2O95376 493 aa19.37■□□□□ 0.69
NUP88-210ENST00000574867 NEDD9Q14511 834 aa19.37■□□□□ 0.69
NUP88-210ENST00000574867 UNC93B1Q9H1C4 597 aa19.37■□□□□ 0.69
NUP88-210ENST00000574867 C11orf97A0A1B0GVM6 126 aaPredicted RBP19.36■□□□□ 0.69
NUP88-210ENST00000574867 TBX3O15119 743 aa19.36■□□□□ 0.69
NUP88-210ENST00000574867 SLC37A4O43826 429 aa19.36■□□□□ 0.69
NUP88-210ENST00000574867 RARBP10826 455 aa19.36■□□□□ 0.69
NUP88-210ENST00000574867 CCL5P13501 91 aa19.36■□□□□ 0.69
NUP88-210ENST00000574867 SMPD1P17405 629 aa19.36■□□□□ 0.69
NUP88-210ENST00000574867 UBA1P22314 1058 aaKnown RBP19.36■□□□□ 0.69
NUP88-210ENST00000574867 AGO4Q9HCK5 861 aaKnown RBP19.36■□□□□ 0.69
NUP88-210ENST00000574867 PAK6Q9NQU5 681 aaPredicted RBP19.36■□□□□ 0.69
NUP88-210ENST00000574867 ZDHHC9Q9Y397 364 aa19.36■□□□□ 0.69
NUP88-210ENST00000574867 Q9Y3F1 56 aa19.36■□□□□ 0.69
NUP88-210ENST00000574867 WNT7AO00755 349 aa19.36■□□□□ 0.69
NUP88-210ENST00000574867 DUSP11O75319 330 aaKnown RBP19.36■□□□□ 0.69
NUP88-210ENST00000574867 ARP10275 920 aa19.36■□□□□ 0.69
NUP88-210ENST00000574867 MCM7P33993 719 aa19.36■□□□□ 0.69
NUP88-210ENST00000574867 FOXD4L5Q5VV16 416 aaPredicted RBP19.36■□□□□ 0.69
NUP88-210ENST00000574867 FOXD4L4Q8WXT5 416 aaPredicted RBP19.36■□□□□ 0.69
NUP88-210ENST00000574867 ZNF577Q9BSK1 485 aa19.36■□□□□ 0.69
NUP88-210ENST00000574867 GNEQ9Y223 722 aaKnown RBP19.36■□□□□ 0.69
NUP88-210ENST00000574867 ATP6V1DQ9Y5K8 247 aa19.36■□□□□ 0.69
NUP88-210ENST00000574867 IPO5O00410 1097 aaKnown RBP19.35■□□□□ 0.69
NUP88-210ENST00000574867 MSH4O15457 936 aa19.35■□□□□ 0.69
NUP88-210ENST00000574867 KCNA2P16389 499 aa19.35■□□□□ 0.69
NUP88-210ENST00000574867 MTFR1Q15390 333 aa19.35■□□□□ 0.69
NUP88-210ENST00000574867 LY6KQ17RY6 165 aa19.35■□□□□ 0.69
NUP88-210ENST00000574867 POTEDQ86YR6 584 aa19.35■□□□□ 0.69
NUP88-210ENST00000574867 ETNPPLQ8TBG4 499 aa19.35■□□□□ 0.69
NUP88-210ENST00000574867 FAM20AQ96MK3 541 aa19.35■□□□□ 0.69
NUP88-210ENST00000574867 RNF208Q9H0X6 261 aa19.35■□□□□ 0.69
NUP88-210ENST00000574867 KCNMB3Q9NPA1 279 aa19.35■□□□□ 0.69
NUP88-210ENST00000574867 EIF4ENIF1Q9NRA8 985 aaKnown RBP19.35■□□□□ 0.69
NUP88-210ENST00000574867 PCDHB6Q9Y5E3 794 aa19.35■□□□□ 0.69
NUP88-210ENST00000574867 NFASCO94856 1347 aa19.35■□□□□ 0.69
NUP88-210ENST00000574867 ADCY6O43306 1168 aa19.34■□□□□ 0.69
NUP88-210ENST00000574867 BMP15O95972 392 aa19.34■□□□□ 0.69
NUP88-210ENST00000574867 GH1P01241 217 aa19.34■□□□□ 0.69
NUP88-210ENST00000574867 TLK2Q86UE8 772 aa19.34■□□□□ 0.69
NUP88-210ENST00000574867 SDF4Q9BRK5 362 aa19.34■□□□□ 0.69
NUP88-210ENST00000574867 TBC1D22BQ9NU19 505 aa19.34■□□□□ 0.69
NUP88-210ENST00000574867 NBR1Q14596 966 aa19.34■□□□□ 0.69
NUP88-210ENST00000574867 ZNF174Q15697 407 aa19.34■□□□□ 0.69
NUP88-210ENST00000574867 CALCRLQ16602 461 aa19.34■□□□□ 0.69
NUP88-210ENST00000574867 SLFN12Q8IYM2 578 aa19.34■□□□□ 0.69
NUP88-210ENST00000574867 SLC5A5Q92911 643 aa19.34■□□□□ 0.69
NUP88-210ENST00000574867 EMID1Q96A84 441 aaPredicted RBP19.34■□□□□ 0.69
NUP88-210ENST00000574867 ZNF396Q96N95 335 aaPredicted RBP19.34■□□□□ 0.69
NUP88-210ENST00000574867 RIT2Q99578 217 aa19.34■□□□□ 0.69
NUP88-210ENST00000574867 LAD1O00515 517 aa19.33■□□□□ 0.69
NUP88-210ENST00000574867 GGPS1O95749 300 aa19.33■□□□□ 0.69
NUP88-210ENST00000574867 SP2Q02086 613 aa19.33■□□□□ 0.69
NUP88-210ENST00000574867 CELF3Q5SZQ8 465 aaKnown RBP19.33■□□□□ 0.69
NUP88-210ENST00000574867 METTL7BQ6UX53 244 aa19.33■□□□□ 0.69
NUP88-210ENST00000574867 DHX37Q8IY37 1157 aaKnown RBP19.33■□□□□ 0.69
NUP88-210ENST00000574867 SPC25Q9HBM1 224 aa19.33■□□□□ 0.69
NUP88-210ENST00000574867 CHMP5Q9NZZ3 219 aa19.33■□□□□ 0.69
NUP88-210ENST00000574867 PKD2L1Q9P0L9 805 aa19.33■□□□□ 0.69
NUP88-210ENST00000574867 CEP131Q9UPN4 1083 aa19.33■□□□□ 0.69
NUP88-210ENST00000574867 ATP9AO75110 1047 aa19.32■□□□□ 0.68
NUP88-210ENST00000574867 BAG4O95429 457 aaKnown RBP19.32■□□□□ 0.68
NUP88-210ENST00000574867 ARHGAP1Q07960 439 aa19.32■□□□□ 0.68
NUP88-210ENST00000574867 ITGB3BPQ13352 177 aaPredicted RBP19.32■□□□□ 0.68
NUP88-210ENST00000574867 LAMC2Q13753 1193 aa19.32■□□□□ 0.68
NUP88-210ENST00000574867 COL13A1Q5TAT6 717 aaPredicted RBP19.32■□□□□ 0.68
NUP88-210ENST00000574867 ATL3Q6DD88 541 aa19.32■□□□□ 0.68
NUP88-210ENST00000574867 FAM173BQ6P4H8 233 aa19.32■□□□□ 0.68
NUP88-210ENST00000574867 LENG1Q96BZ8 264 aaPredicted RBP19.32■□□□□ 0.68
NUP88-210ENST00000574867 AP5M1Q9H0R1 490 aa19.32■□□□□ 0.68
NUP88-210ENST00000574867 UPF3AQ9H1J1 476 aaKnown RBP19.32■□□□□ 0.68
NUP88-210ENST00000574867 XPNPEP3Q9NQH7 507 aa19.32■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms