RNA–Protein interactions for RNA: ENST00000574855.1

NUP88-209, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 434 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-209ENST00000574855 C8orf37Q96NL8 207 aa4.89□□□□□ -1.63
NUP88-209ENST00000574855 YIPF4Q9BSR8 244 aa4.89□□□□□ -1.63
NUP88-209ENST00000574855 HIRIP3Q9BW71 556 aaPredicted RBP4.89□□□□□ -1.63
NUP88-209ENST00000574855 EPB41L1Q9H4G0 881 aa4.89□□□□□ -1.63
NUP88-209ENST00000574855 FBXL7Q9UJT9 491 aa4.89□□□□□ -1.63
NUP88-209ENST00000574855 PDPK1O15530 556 aa4.88□□□□□ -1.63
NUP88-209ENST00000574855 SMARCA5O60264 1052 aaPredicted RBP4.88□□□□□ -1.63
NUP88-209ENST00000574855 MAFKO60675 156 aa4.88□□□□□ -1.63
NUP88-209ENST00000574855 GTF2F1P35269 517 aaKnown RBP eCLIP4.88□□□□□ -1.63
NUP88-209ENST00000574855 LIPIQ6XZB0 460 aa4.88□□□□□ -1.63
NUP88-209ENST00000574855 DPH6Q7L8W6 267 aa4.88□□□□□ -1.63
NUP88-209ENST00000574855 ADGRG2Q8IZP9 1017 aa4.88□□□□□ -1.63
NUP88-209ENST00000574855 LINC00482Q8N8I6 264 aa4.88□□□□□ -1.63
NUP88-209ENST00000574855 SYT8Q8NBV8 401 aa4.88□□□□□ -1.63
NUP88-209ENST00000574855 PPIL4Q8WUA2 492 aaKnown RBP eCLIP4.88□□□□□ -1.63
NUP88-209ENST00000574855 NOX5Q96PH1 765 aa4.88□□□□□ -1.63
NUP88-209ENST00000574855 PHF20Q9BVI0 1012 aa4.88□□□□□ -1.63
NUP88-209ENST00000574855 SPATA9Q9BWV2 254 aa4.88□□□□□ -1.63
NUP88-209ENST00000574855 CCDC113Q9H0I3 377 aa4.88□□□□□ -1.63
NUP88-209ENST00000574855 ARHGEF4Q9NR80 690 aa4.88□□□□□ -1.63
NUP88-209ENST00000574855 NTMQ9P121 344 aa4.88□□□□□ -1.63
NUP88-209ENST00000574855 SIRPGQ9P1W8 387 aa4.88□□□□□ -1.63
NUP88-209ENST00000574855 ZNF652Q9Y2D9 606 aa4.88□□□□□ -1.63
NUP88-209ENST00000574855 KRIT1O00522 736 aa4.87□□□□□ -1.63
NUP88-209ENST00000574855 TADA3O75528 432 aa4.87□□□□□ -1.63
NUP88-209ENST00000574855 C8BP07358 591 aa4.87□□□□□ -1.63
NUP88-209ENST00000574855 SARSP49591 514 aaKnown RBP4.87□□□□□ -1.63
NUP88-209ENST00000574855 NKX3-2P78367 333 aa4.87□□□□□ -1.63
NUP88-209ENST00000574855 IFRD2Q12894 506 aaPredicted RBP4.87□□□□□ -1.63
NUP88-209ENST00000574855 SMAD4Q13485 552 aaKnown RBP4.87□□□□□ -1.63
NUP88-209ENST00000574855 RASGRF1Q13972 1273 aa4.87□□□□□ -1.63
NUP88-209ENST00000574855 NFIXQ14938 502 aa4.87□□□□□ -1.63
NUP88-209ENST00000574855 EMC4Q5J8M3 183 aa4.87□□□□□ -1.63
NUP88-209ENST00000574855 FAM126BQ8IXS8 530 aa4.87□□□□□ -1.63
NUP88-209ENST00000574855 CARFQ8N187 725 aa4.87□□□□□ -1.63
NUP88-209ENST00000574855 FAM26EQ8N5C1 309 aa4.87□□□□□ -1.63
NUP88-209ENST00000574855 TTLL6Q8N841 843 aa4.87□□□□□ -1.63
NUP88-209ENST00000574855 OSBP2Q969R2 916 aa4.87□□□□□ -1.63
NUP88-209ENST00000574855 ARMC5Q96C12 935 aa4.87□□□□□ -1.63
NUP88-209ENST00000574855 TOE1Q96GM8 510 aaKnown RBP4.87□□□□□ -1.63
NUP88-209ENST00000574855 IPO9Q96P70 1041 aaKnown RBP4.87□□□□□ -1.63
NUP88-209ENST00000574855 ZFYVE21Q9BQ24 234 aa4.87□□□□□ -1.63
NUP88-209ENST00000574855 GORASP1Q9BQQ3 440 aa4.87□□□□□ -1.63
NUP88-209ENST00000574855 C11orf84Q9BUA3 381 aaPredicted RBP4.87□□□□□ -1.63
NUP88-209ENST00000574855 MSRB2Q9Y3D2 182 aa4.87□□□□□ -1.63
NUP88-209ENST00000574855 PCDHB4Q9Y5E5 795 aa4.87□□□□□ -1.63
NUP88-209ENST00000574855 A0A0G2JLL6 359 aaPredicted RBP4.86□□□□□ -1.63
NUP88-209ENST00000574855 A0A1B0GTL3 188 aa4.86□□□□□ -1.63
NUP88-209ENST00000574855 CCDC85CA6NKD9 419 aa4.86□□□□□ -1.63
NUP88-209ENST00000574855 MSCO60682 206 aa4.86□□□□□ -1.63
NUP88-209ENST00000574855 DLX2Q07687 328 aaPredicted RBP4.86□□□□□ -1.63
NUP88-209ENST00000574855 MTERF2Q49AM1 385 aa4.86□□□□□ -1.63
NUP88-209ENST00000574855 ERICH6BQ5W0A0 696 aa4.86□□□□□ -1.63
NUP88-209ENST00000574855 SPATC1Q76KD6 591 aa4.86□□□□□ -1.63
NUP88-209ENST00000574855 FRMD5Q7Z6J6 570 aa4.86□□□□□ -1.63
NUP88-209ENST00000574855 SCUBE1Q8IWY4 988 aa4.86□□□□□ -1.63
NUP88-209ENST00000574855 TRIM48Q8IWZ4 208 aa4.86□□□□□ -1.63
NUP88-209ENST00000574855 IFNL3Q8IZI9 196 aa4.86□□□□□ -1.63
NUP88-209ENST00000574855 FAM9AQ8IZU1 332 aaPredicted RBP4.86□□□□□ -1.63
NUP88-209ENST00000574855 KYQ8NBH2 561 aa4.86□□□□□ -1.63
NUP88-209ENST00000574855 PHOSPHO1Q8TCT1 267 aa4.86□□□□□ -1.63
NUP88-209ENST00000574855 CDC6Q99741 560 aa4.86□□□□□ -1.63
NUP88-209ENST00000574855 SPATA25Q9BR10 227 aa4.86□□□□□ -1.63
NUP88-209ENST00000574855 JAM3Q9BX67 310 aa4.86□□□□□ -1.63
NUP88-209ENST00000574855 CDIP1Q9H305 208 aa4.86□□□□□ -1.63
NUP88-209ENST00000574855 SMOC1Q9H4F8 434 aa4.86□□□□□ -1.63
NUP88-209ENST00000574855 SPATA6Q9NWH7 488 aaPredicted RBP4.86□□□□□ -1.63
NUP88-209ENST00000574855 RTEL1Q9NZ71 1219 aa4.86□□□□□ -1.63
NUP88-209ENST00000574855 TCRBV5S2A0A599 114 aa4.85□□□□□ -1.63
NUP88-209ENST00000574855 B8ZZF3 427 aa4.85□□□□□ -1.63
NUP88-209ENST00000574855 FOXD2O60548 495 aaPredicted RBP4.85□□□□□ -1.63
NUP88-209ENST00000574855 STAT5AP42229 794 aa4.85□□□□□ -1.63
NUP88-209ENST00000574855 SSRP1Q08945 709 aaKnown RBP4.85□□□□□ -1.63
NUP88-209ENST00000574855 RBL2Q08999 1139 aa4.85□□□□□ -1.63
NUP88-209ENST00000574855 KIZQ2M2Z5 673 aa4.85□□□□□ -1.63
NUP88-209ENST00000574855 NT5DC1Q5TFE4 455 aa4.85□□□□□ -1.63
NUP88-209ENST00000574855 YOD1Q5VVQ6 348 aaPredicted RBP4.85□□□□□ -1.63
NUP88-209ENST00000574855 STYK1Q6J9G0 422 aa4.85□□□□□ -1.63
NUP88-209ENST00000574855 CYP4F22Q6NT55 531 aa4.85□□□□□ -1.63
NUP88-209ENST00000574855 LBX2Q6XYB7 198 aa4.85□□□□□ -1.63
NUP88-209ENST00000574855 ARRDC4Q8NCT1 418 aa4.85□□□□□ -1.63
NUP88-209ENST00000574855 TEPSINQ96N21 525 aa4.85□□□□□ -1.63
NUP88-209ENST00000574855 SLC6A20Q9NP91 592 aa4.85□□□□□ -1.63
NUP88-209ENST00000574855 USP40Q9NVE5 1235 aa4.85□□□□□ -1.63
NUP88-209ENST00000574855 DTLQ9NZJ0 730 aa4.85□□□□□ -1.63
NUP88-209ENST00000574855 MYOTQ9UBF9 498 aa4.85□□□□□ -1.63
NUP88-209ENST00000574855 PFDN2Q9UHV9 154 aa4.85□□□□□ -1.63
NUP88-209ENST00000574855 BLACEA4D250 179 aa4.84□□□□□ -1.63
NUP88-209ENST00000574855 KRTAP9-7A8MTY7 169 aa4.84□□□□□ -1.63
NUP88-209ENST00000574855 PPM1GO15355 546 aaPredicted RBP4.84□□□□□ -1.63
NUP88-209ENST00000574855 RPL13P26373 211 aaKnown RBP4.84□□□□□ -1.63
NUP88-209ENST00000574855 THBS2P35442 1172 aa4.84□□□□□ -1.63
NUP88-209ENST00000574855 ITGA1P56199 1179 aa4.84□□□□□ -1.63
NUP88-209ENST00000574855 GPR85P60893 370 aa4.84□□□□□ -1.63
NUP88-209ENST00000574855 SPIRE1Q08AE8 756 aa4.84□□□□□ -1.63
NUP88-209ENST00000574855 NTRK3Q16288 839 aa4.84□□□□□ -1.63
NUP88-209ENST00000574855 CR1LQ2VPA4 569 aa4.84□□□□□ -1.63
NUP88-209ENST00000574855 SOGA3Q5TF21 947 aa4.84□□□□□ -1.63
NUP88-209ENST00000574855 KCNT2Q6UVM3 1135 aa4.84□□□□□ -1.63
NUP88-209ENST00000574855 STK32CQ86UX6 486 aa4.84□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms