RNA–Protein interactions for RNA: ENST00000574087.1

NUP88-208, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 548 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-208ENST00000574087 SMARCA5O60264 1052 aaPredicted RBP6.95□□□□□ -1.3
NUP88-208ENST00000574087 SRGAP2CP0DJJ0 459 aa6.95□□□□□ -1.3
NUP88-208ENST00000574087 PYGMP11217 842 aa6.95□□□□□ -1.3
NUP88-208ENST00000574087 GNAT1P11488 350 aa6.95□□□□□ -1.3
NUP88-208ENST00000574087 COL6A2P12110 1019 aa6.95□□□□□ -1.3
NUP88-208ENST00000574087 ZNF200P98182 395 aaPredicted RBP6.95□□□□□ -1.3
NUP88-208ENST00000574087 SPIRE1Q08AE8 756 aa6.95□□□□□ -1.3
NUP88-208ENST00000574087 C21orf62-AS1Q17RA5 79 aa6.95□□□□□ -1.3
NUP88-208ENST00000574087 DALRD3Q5D0E6 543 aaKnown RBP6.95□□□□□ -1.3
NUP88-208ENST00000574087 ABHD17CQ6PCB6 329 aa6.95□□□□□ -1.3
NUP88-208ENST00000574087 LDHDQ86WU2 507 aa6.95□□□□□ -1.3
NUP88-208ENST00000574087 SGPP1Q9BX95 441 aa6.95□□□□□ -1.3
NUP88-208ENST00000574087 SMOC1Q9H4F8 434 aa6.95□□□□□ -1.3
NUP88-208ENST00000574087 INTS7Q9NVH2 962 aaKnown RBP6.95□□□□□ -1.3
NUP88-208ENST00000574087 PALD1Q9ULE6 856 aa6.95□□□□□ -1.3
NUP88-208ENST00000574087 PCDHA5Q9Y5H7 936 aa6.95□□□□□ -1.3
NUP88-208ENST00000574087 TCRBV5S4A2TA0A5A2 114 aa6.94□□□□□ -1.3
NUP88-208ENST00000574087 KRIT1O00522 736 aa6.94□□□□□ -1.3
NUP88-208ENST00000574087 KRT1P04264 644 aa6.94□□□□□ -1.3
NUP88-208ENST00000574087 ASLP04424 464 aa6.94□□□□□ -1.3
NUP88-208ENST00000574087 CDR1P51861 262 aa6.94□□□□□ -1.3
NUP88-208ENST00000574087 TMEM132EQ6IEE7 984 aa6.94□□□□□ -1.3
NUP88-208ENST00000574087 SYDE1Q6ZW31 735 aaPredicted RBP6.94□□□□□ -1.3
NUP88-208ENST00000574087 MILR1Q7Z6M3 343 aa6.94□□□□□ -1.3
NUP88-208ENST00000574087 UHMK1Q8TAS1 419 aaKnown RBP6.94□□□□□ -1.3
NUP88-208ENST00000574087 ALG3Q92685 438 aa6.94□□□□□ -1.3
NUP88-208ENST00000574087 KCNN1Q92952 543 aa6.94□□□□□ -1.3
NUP88-208ENST00000574087 CELF4Q9BZC1 486 aaKnown RBP6.94□□□□□ -1.3
NUP88-208ENST00000574087 BCAS3Q9H6U6 928 aa6.94□□□□□ -1.3
NUP88-208ENST00000574087 MAGEC2Q9UBF1 373 aaPredicted RBP6.94□□□□□ -1.3
NUP88-208ENST00000574087 CBLCQ9ULV8 474 aa6.94□□□□□ -1.3
NUP88-208ENST00000574087 PLAAQ9Y263 795 aa6.94□□□□□ -1.3
NUP88-208ENST00000574087 TNPO3Q9Y5L0 923 aaKnown RBP6.94□□□□□ -1.3
NUP88-208ENST00000574087 TCRBV5S2A0A599 114 aa6.93□□□□□ -1.3
NUP88-208ENST00000574087 CCDC66A2RUB6 948 aa6.93□□□□□ -1.3
NUP88-208ENST00000574087 ETV2O00321 342 aaPredicted RBP6.93□□□□□ -1.3
NUP88-208ENST00000574087 N4BP3O15049 544 aa6.93□□□□□ -1.3
NUP88-208ENST00000574087 GSTA4O15217 222 aa6.93□□□□□ -1.3
NUP88-208ENST00000574087 MAFKO60675 156 aa6.93□□□□□ -1.3
NUP88-208ENST00000574087 NPTXRO95502 500 aa6.93□□□□□ -1.3
NUP88-208ENST00000574087 ASGR2P07307 311 aa6.93□□□□□ -1.3
NUP88-208ENST00000574087 MED14OSP0DP75 135 aa6.93□□□□□ -1.3
NUP88-208ENST00000574087 GLDCP23378 1020 aa6.93□□□□□ -1.3
NUP88-208ENST00000574087 IGFALSP35858 605 aa6.93□□□□□ -1.3
NUP88-208ENST00000574087 DLG4P78352 724 aa6.93□□□□□ -1.3
NUP88-208ENST00000574087 LACTBP83111 547 aaPredicted RBP6.93□□□□□ -1.3
NUP88-208ENST00000574087 FAM47CQ5HY64 1035 aa6.93□□□□□ -1.3
NUP88-208ENST00000574087 EGFLAMQ63HQ2 1017 aa6.93□□□□□ -1.3
NUP88-208ENST00000574087 MIB1Q86YT6 1006 aa6.93□□□□□ -1.3
NUP88-208ENST00000574087 NIM1KQ8IY84 436 aa6.93□□□□□ -1.3
NUP88-208ENST00000574087 BHLHE22Q8NFJ8 381 aaPredicted RBP6.93□□□□□ -1.3
NUP88-208ENST00000574087 PHOSPHO1Q8TCT1 267 aa6.93□□□□□ -1.3
NUP88-208ENST00000574087 SH3RF2Q8TEC5 729 aa6.93□□□□□ -1.3
NUP88-208ENST00000574087 MZB1Q8WU39 189 aa6.93□□□□□ -1.3
NUP88-208ENST00000574087 PDGFDQ9GZP0 370 aaPredicted RBP6.93□□□□□ -1.3
NUP88-208ENST00000574087 ASH2LQ9UBL3 628 aa6.93□□□□□ -1.3
NUP88-208ENST00000574087 COQ6Q9Y2Z9 468 aa6.93□□□□□ -1.3
NUP88-208ENST00000574087 PCDHB4Q9Y5E5 795 aa6.93□□□□□ -1.3
NUP88-208ENST00000574087 FAM83GA6ND36 823 aa6.92□□□□□ -1.3
NUP88-208ENST00000574087 B4E1Z4 1266 aa6.92□□□□□ -1.3
NUP88-208ENST00000574087 SLC27A2O14975 620 aa6.92□□□□□ -1.3
NUP88-208ENST00000574087 OPA1O60313 960 aa6.92□□□□□ -1.3
NUP88-208ENST00000574087 AMY2AP04746 511 aa6.92□□□□□ -1.3
NUP88-208ENST00000574087 APPP05067 770 aa6.92□□□□□ -1.3
NUP88-208ENST00000574087 PDE6AP16499 860 aa6.92□□□□□ -1.3
NUP88-208ENST00000574087 AMY2BP19961 511 aa6.92□□□□□ -1.3
NUP88-208ENST00000574087 PMLP29590 882 aa6.92□□□□□ -1.3
NUP88-208ENST00000574087 EPHB3P54753 998 aa6.92□□□□□ -1.3
NUP88-208ENST00000574087 GYS2P54840 703 aa6.92□□□□□ -1.3
NUP88-208ENST00000574087 ST5P78524 1137 aa6.92□□□□□ -1.3
NUP88-208ENST00000574087 ZNF460Q14592 562 aa6.92□□□□□ -1.3
NUP88-208ENST00000574087 GPR19Q15760 415 aa6.92□□□□□ -1.3
NUP88-208ENST00000574087 ZNF648Q5T619 568 aaPredicted RBP6.92□□□□□ -1.3
NUP88-208ENST00000574087 ZCCHC8Q6NZY4 707 aaKnown RBP6.92□□□□□ -1.3
NUP88-208ENST00000574087 OVCH1Q7RTY7 1134 aa6.92□□□□□ -1.3
NUP88-208ENST00000574087 AMIGO3Q86WK7 504 aa6.92□□□□□ -1.3
NUP88-208ENST00000574087 IGDCC3Q8IVU1 814 aa6.92□□□□□ -1.3
NUP88-208ENST00000574087 ARRDC4Q8NCT1 418 aa6.92□□□□□ -1.3
NUP88-208ENST00000574087 CPA5Q8WXQ8 436 aa6.92□□□□□ -1.3
NUP88-208ENST00000574087 RNF38Q9H0F5 515 aa6.92□□□□□ -1.3
NUP88-208ENST00000574087 CATSPERZQ9NTU4 200 aa6.92□□□□□ -1.3
NUP88-208ENST00000574087 MYOTQ9UBF9 498 aa6.92□□□□□ -1.3
NUP88-208ENST00000574087 ZNF561-AS1K7EIQ3 104 aa6.91□□□□□ -1.3
NUP88-208ENST00000574087 NCAM1P13591 858 aa6.91□□□□□ -1.3
NUP88-208ENST00000574087 IGFBP6P24592 240 aaPredicted RBP6.91□□□□□ -1.3
NUP88-208ENST00000574087 DNM2P50570 870 aa6.91□□□□□ -1.3
NUP88-208ENST00000574087 EPHA5P54756 1037 aa6.91□□□□□ -1.3
NUP88-208ENST00000574087 NCKAP1LP55160 1127 aa6.91□□□□□ -1.3
NUP88-208ENST00000574087 TM4SF20Q53R12 229 aa6.91□□□□□ -1.3
NUP88-208ENST00000574087 OSTM1Q86WC4 334 aa6.91□□□□□ -1.3
NUP88-208ENST00000574087 DHX37Q8IY37 1157 aaKnown RBP6.91□□□□□ -1.3
NUP88-208ENST00000574087 IGSF22Q8N9C0 903 aa6.91□□□□□ -1.3
NUP88-208ENST00000574087 CLEC4DQ8WXI8 215 aa6.91□□□□□ -1.3
NUP88-208ENST00000574087 MFSD3Q96ES6 412 aa6.91□□□□□ -1.3
NUP88-208ENST00000574087 PPP1R16BQ96T49 567 aa6.91□□□□□ -1.3
NUP88-208ENST00000574087 DSEQ9UL01 958 aa6.91□□□□□ -1.3
NUP88-208ENST00000574087 IRS4O14654 1257 aaPredicted RBP6.9□□□□□ -1.3
NUP88-208ENST00000574087 TMEM253P0C7T8 217 aa6.9□□□□□ -1.3
NUP88-208ENST00000574087 ATF2P15336 505 aa6.9□□□□□ -1.3
NUP88-208ENST00000574087 POU3F2P20265 443 aaPredicted RBP6.9□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms