RNA–Protein interactions for RNA: ENST00000573584.5

NUP88-207, Transcript of nucleoporin 88, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUP88, Length 2,916 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-207ENST00000573584 RIOX1Q9H6W3 641 aa17.28■□□□□ 0.36
NUP88-207ENST00000573584 COL4A3BPQ9Y5P4 624 aa17.28■□□□□ 0.36
NUP88-207ENST00000573584 MYH10P35580 1976 aa17.28■□□□□ 0.36
NUP88-207ENST00000573584 FRMPD2Q68DX3 1309 aaPredicted RBP17.28■□□□□ 0.36
NUP88-207ENST00000573584 TRAF5O00463 557 aa17.27■□□□□ 0.36
NUP88-207ENST00000573584 TTC31Q49AM3 519 aaPredicted RBP17.27■□□□□ 0.36
NUP88-207ENST00000573584 CCDC40Q4G0X9 1142 aa17.27■□□□□ 0.36
NUP88-207ENST00000573584 TMC4Q7Z404 712 aa17.27■□□□□ 0.36
NUP88-207ENST00000573584 ZNF804AQ7Z570 1209 aa17.27■□□□□ 0.36
NUP88-207ENST00000573584 PROM2Q8N271 834 aa17.27■□□□□ 0.36
NUP88-207ENST00000573584 GPR101Q96P66 508 aaPredicted RBP17.27■□□□□ 0.36
NUP88-207ENST00000573584 EHD4Q9H223 541 aa17.27■□□□□ 0.36
NUP88-207ENST00000573584 CNTNAP4Q9C0A0 1308 aa17.27■□□□□ 0.36
NUP88-207ENST00000573584 ROBO1Q9Y6N7 1651 aa17.27■□□□□ 0.36
NUP88-207ENST00000573584 EDIL3O43854 480 aa17.27■□□□□ 0.36
NUP88-207ENST00000573584 TNFRSF8P28908 595 aa17.27■□□□□ 0.36
NUP88-207ENST00000573584 GNGT1P63211 74 aa17.27■□□□□ 0.36
NUP88-207ENST00000573584 FAM83BQ5T0W9 1011 aa17.27■□□□□ 0.36
NUP88-207ENST00000573584 SFMBT2Q5VUG0 894 aa17.27■□□□□ 0.36
NUP88-207ENST00000573584 PACS2Q86VP3 889 aa17.27■□□□□ 0.36
NUP88-207ENST00000573584 EFCAB13Q8IY85 973 aa17.27■□□□□ 0.36
NUP88-207ENST00000573584 BCAS4Q8TDM0 211 aa17.27■□□□□ 0.36
NUP88-207ENST00000573584 ARL8AQ96BM9 186 aa17.27■□□□□ 0.36
NUP88-207ENST00000573584 EFCC1Q9HA90 598 aa17.27■□□□□ 0.36
NUP88-207ENST00000573584 CEP72Q9P209 647 aa17.27■□□□□ 0.36
NUP88-207ENST00000573584 RBAK-RBAKDNI3L0D1 243 aa17.27■□□□□ 0.35
NUP88-207ENST00000573584 EPB41P11171 864 aaKnown RBP17.27■□□□□ 0.35
NUP88-207ENST00000573584 NFIXQ14938 502 aa17.27■□□□□ 0.35
NUP88-207ENST00000573584 IFT20Q8IY31 132 aa17.27■□□□□ 0.35
NUP88-207ENST00000573584 NUCKS1Q9H1E3 243 aaKnown RBP17.27■□□□□ 0.35
NUP88-207ENST00000573584 RABEP2Q9H5N1 569 aa17.27■□□□□ 0.35
NUP88-207ENST00000573584 RNF14Q9UBS8 474 aa17.27■□□□□ 0.35
NUP88-207ENST00000573584 EBAG9O00559 213 aa17.26■□□□□ 0.35
NUP88-207ENST00000573584 EIF3HO15372 352 aaKnown RBP eCLIP17.26■□□□□ 0.35
NUP88-207ENST00000573584 TLR2O60603 784 aa17.26■□□□□ 0.35
NUP88-207ENST00000573584 SERPING1P05155 500 aa17.26■□□□□ 0.35
NUP88-207ENST00000573584 DNA2P51530 1060 aa17.26■□□□□ 0.35
NUP88-207ENST00000573584 TTC19Q6DKK2 380 aaPredicted RBP17.26■□□□□ 0.35
NUP88-207ENST00000573584 ARHGAP27Q6ZUM4 889 aa17.26■□□□□ 0.35
NUP88-207ENST00000573584 hCG_1984214I3L0E3 225 aa17.26■□□□□ 0.35
NUP88-207ENST00000573584 PALMO75781 387 aa17.26■□□□□ 0.35
NUP88-207ENST00000573584 NOL4O94818 638 aa17.26■□□□□ 0.35
NUP88-207ENST00000573584 GLI1P08151 1106 aa17.26■□□□□ 0.35
NUP88-207ENST00000573584 PDHBP11177 359 aa17.26■□□□□ 0.35
NUP88-207ENST00000573584 HOXA7P31268 230 aaPredicted RBP17.26■□□□□ 0.35
NUP88-207ENST00000573584 NOP2P46087 812 aaKnown RBP17.26■□□□□ 0.35
NUP88-207ENST00000573584 TNNI2P48788 182 aa17.26■□□□□ 0.35
NUP88-207ENST00000573584 POLR2FP61218 127 aaKnown RBP17.26■□□□□ 0.35
NUP88-207ENST00000573584 COASYQ13057 564 aa17.26■□□□□ 0.35
NUP88-207ENST00000573584 ECM1Q16610 540 aa17.26■□□□□ 0.35
NUP88-207ENST00000573584 TMEM119Q4V9L6 283 aa17.26■□□□□ 0.35
NUP88-207ENST00000573584 TTMPQ5BVD1 217 aa17.26■□□□□ 0.35
NUP88-207ENST00000573584 CERS3Q8IU89 383 aa17.26■□□□□ 0.35
NUP88-207ENST00000573584 ZNF713Q8N859 430 aaPredicted RBP17.26■□□□□ 0.35
NUP88-207ENST00000573584 FAM107BQ9H098 131 aa17.26■□□□□ 0.35
NUP88-207ENST00000573584 LUC7LQ9NQ29 371 aaKnown RBP17.26■□□□□ 0.35
NUP88-207ENST00000573584 COL5A3P25940 1745 aaPredicted RBP17.26■□□□□ 0.35
NUP88-207ENST00000573584 GPR75-ASB3A0A0A6YYF3 556 aa17.25■□□□□ 0.35
NUP88-207ENST00000573584 FOXR2Q6PJQ5 311 aa17.25■□□□□ 0.35
NUP88-207ENST00000573584 SYN2Q92777 582 aaPredicted RBP17.25■□□□□ 0.35
NUP88-207ENST00000573584 ZIM3Q96PE6 472 aa17.25■□□□□ 0.35
NUP88-207ENST00000573584 SPATA31A5Q5VU36 1347 aa17.25■□□□□ 0.35
NUP88-207ENST00000573584 SPATA31A7Q8IWB4 1347 aa17.25■□□□□ 0.35
NUP88-207ENST00000573584 RPS6KA4O75676 772 aa17.25■□□□□ 0.35
NUP88-207ENST00000573584 CARSP49589 748 aaKnown RBP17.25■□□□□ 0.35
NUP88-207ENST00000573584 ZCWPW2Q504Y3 356 aa17.25■□□□□ 0.35
NUP88-207ENST00000573584 IFT81Q8WYA0 676 aa17.25■□□□□ 0.35
NUP88-207ENST00000573584 DNAJC19Q96DA6 116 aa17.25■□□□□ 0.35
NUP88-207ENST00000573584 LSM14BQ9BX40 385 aaKnown RBP17.25■□□□□ 0.35
NUP88-207ENST00000573584 SHTN1A0MZ66 631 aa17.24■□□□□ 0.35
NUP88-207ENST00000573584 GNPATO15228 680 aa17.24■□□□□ 0.35
NUP88-207ENST00000573584 FTCDO95954 541 aa17.24■□□□□ 0.35
NUP88-207ENST00000573584 SSBP05455 408 aaKnown RBP eCLIP17.24■□□□□ 0.35
NUP88-207ENST00000573584 GUCY2DQ02846 1103 aa17.24■□□□□ 0.35
NUP88-207ENST00000573584 NNTQ13423 1086 aa17.24■□□□□ 0.35
NUP88-207ENST00000573584 TBC1D5Q92609 795 aa17.24■□□□□ 0.35
NUP88-207ENST00000573584 EPB41L5Q9HCM4 733 aa17.24■□□□□ 0.35
NUP88-207ENST00000573584 BMP2KQ9NSY1 1161 aaPredicted RBP17.24■□□□□ 0.35
NUP88-207ENST00000573584 PANK4Q9NVE7 773 aa17.24■□□□□ 0.35
NUP88-207ENST00000573584 TBC1D7Q9P0N9 293 aa17.24■□□□□ 0.35
NUP88-207ENST00000573584 NFU1Q9UMS0 254 aa17.24■□□□□ 0.35
NUP88-207ENST00000573584 ATP6V0A2Q9Y487 856 aa17.24■□□□□ 0.35
NUP88-207ENST00000573584 GRIN2DO15399 1336 aa17.24■□□□□ 0.35
NUP88-207ENST00000573584 A0A087WUV0 522 aaPredicted RBP17.24■□□□□ 0.35
NUP88-207ENST00000573584 ESYT3A0FGR9 886 aa17.24■□□□□ 0.35
NUP88-207ENST00000573584 MARCH6O60337 910 aa17.24■□□□□ 0.35
NUP88-207ENST00000573584 HEXIM1O94992 359 aaKnown RBP17.24■□□□□ 0.35
NUP88-207ENST00000573584 ARID5AQ03989 594 aa17.24■□□□□ 0.35
NUP88-207ENST00000573584 GRAPQ13588 217 aa17.24■□□□□ 0.35
NUP88-207ENST00000573584 NAB2Q15742 525 aa17.24■□□□□ 0.35
NUP88-207ENST00000573584 FAM26FQ5R3K3 315 aa17.24■□□□□ 0.35
NUP88-207ENST00000573584 GRAPLQ8TC17 118 aaPredicted RBP17.24■□□□□ 0.35
NUP88-207ENST00000573584 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP17.24■□□□□ 0.35
NUP88-207ENST00000573584 GDF3Q9NR23 364 aa17.24■□□□□ 0.35
NUP88-207ENST00000573584 KRT14P02533 472 aa17.24■□□□□ 0.35
NUP88-207ENST00000573584 KLRC1P26715 233 aa17.24■□□□□ 0.35
NUP88-207ENST00000573584 NOVP48745 357 aa17.24■□□□□ 0.35
NUP88-207ENST00000573584 GJA10Q969M2 543 aa17.24■□□□□ 0.35
NUP88-207ENST00000573584 UTP18Q9Y5J1 556 aaKnown RBP eCLIP17.24■□□□□ 0.35
NUP88-207ENST00000573584 ZSCAN5CA6NGD5 496 aaPredicted RBP17.23■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms