RNA–Protein interactions for RNA: ENST00000572019.1

NUP88-203, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-203ENST00000572019 HSDL1Q3SXM5 330 aa22.39■■□□□ 1.17
NUP88-203ENST00000572019 FBXO11Q86XK2 927 aa22.39■■□□□ 1.17
NUP88-203ENST00000572019 PPTC7Q8NI37 304 aa22.39■■□□□ 1.17
NUP88-203ENST00000572019 TGS1Q96RS0 853 aaKnown RBP22.39■■□□□ 1.17
NUP88-203ENST00000572019 ZSCAN10Q96SZ4 725 aaPredicted RBP22.39■■□□□ 1.17
NUP88-203ENST00000572019 RNF41Q9H4P4 317 aaPredicted RBP22.39■■□□□ 1.17
NUP88-203ENST00000572019 KAT14Q9H8E8 782 aa22.39■■□□□ 1.17
NUP88-203ENST00000572019 ZSWIM5Q9P217 1185 aa22.39■■□□□ 1.17
NUP88-203ENST00000572019 ZBTB47Q9UFB7 747 aaPredicted RBP22.39■■□□□ 1.17
NUP88-203ENST00000572019 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP22.38■■□□□ 1.17
NUP88-203ENST00000572019 ZNF213O14771 459 aa22.38■■□□□ 1.17
NUP88-203ENST00000572019 EIF3JO75822 258 aaKnown RBP22.38■■□□□ 1.17
NUP88-203ENST00000572019 HOXD8P13378 290 aaPredicted RBP22.38■■□□□ 1.17
NUP88-203ENST00000572019 HSD17B4P51659 736 aa22.38■■□□□ 1.17
NUP88-203ENST00000572019 ASPRV1Q53RT3 343 aa22.38■■□□□ 1.17
NUP88-203ENST00000572019 TMEM31Q5JXX7 168 aa22.38■■□□□ 1.17
NUP88-203ENST00000572019 UBE2ZQ9H832 354 aaPredicted RBP22.38■■□□□ 1.17
NUP88-203ENST00000572019 MUC6Q6W4X9 2439 aa22.37■■□□□ 1.17
NUP88-203ENST00000572019 DHX16O60231 1041 aaKnown RBP22.37■■□□□ 1.17
NUP88-203ENST00000572019 MYCLP12524 364 aaPredicted RBP22.37■■□□□ 1.17
NUP88-203ENST00000572019 HOXA13P31271 388 aaPredicted RBP22.37■■□□□ 1.17
NUP88-203ENST00000572019 LAMC2Q13753 1193 aa22.37■■□□□ 1.17
NUP88-203ENST00000572019 MYSM1Q5VVJ2 828 aa22.37■■□□□ 1.17
NUP88-203ENST00000572019 CWC27Q6UX04 472 aaKnown RBP22.37■■□□□ 1.17
NUP88-203ENST00000572019 MCF2L2Q86YR7 1114 aa22.37■■□□□ 1.17
NUP88-203ENST00000572019 DHX37Q8IY37 1157 aaKnown RBP22.37■■□□□ 1.17
NUP88-203ENST00000572019 DBF4BQ8NFT6 615 aa22.37■■□□□ 1.17
NUP88-203ENST00000572019 GADD45GIP1Q8TAE8 222 aaPredicted RBP22.37■■□□□ 1.17
NUP88-203ENST00000572019 PDCD2LQ9BRP1 358 aa22.37■■□□□ 1.17
NUP88-203ENST00000572019 IL25Q9H293 177 aa22.37■■□□□ 1.17
NUP88-203ENST00000572019 LMCD1Q9NZU5 365 aa22.37■■□□□ 1.17
NUP88-203ENST00000572019 MRPL11Q9Y3B7 192 aaKnown RBP22.37■■□□□ 1.17
NUP88-203ENST00000572019 LGR5O75473 907 aa22.36■■□□□ 1.17
NUP88-203ENST00000572019 PARP1P09874 1014 aaKnown RBP22.36■■□□□ 1.17
NUP88-203ENST00000572019 IL9P15248 144 aa22.36■■□□□ 1.17
NUP88-203ENST00000572019 KCNA5P22460 613 aa22.36■■□□□ 1.17
NUP88-203ENST00000572019 IKBKEQ14164 716 aa22.36■■□□□ 1.17
NUP88-203ENST00000572019 IQCA1Q86XH1 822 aa22.36■■□□□ 1.17
NUP88-203ENST00000572019 C16orf70Q9BSU1 422 aa22.36■■□□□ 1.17
NUP88-203ENST00000572019 PARNO95453 639 aaKnown RBP22.35■■□□□ 1.17
NUP88-203ENST00000572019 CELF3Q5SZQ8 465 aaKnown RBP22.35■■□□□ 1.17
NUP88-203ENST00000572019 B4GALNT3Q6L9W6 998 aa22.35■■□□□ 1.17
NUP88-203ENST00000572019 KATNAL1Q9BW62 490 aa22.35■■□□□ 1.17
NUP88-203ENST00000572019 MAF1Q9H063 256 aa22.35■■□□□ 1.17
NUP88-203ENST00000572019 TELO2Q9Y4R8 837 aa22.35■■□□□ 1.17
NUP88-203ENST00000572019 PI4K2BG5E9Z4 385 aa22.34■■□□□ 1.17
NUP88-203ENST00000572019 GPR37L1O60883 481 aa22.34■■□□□ 1.17
NUP88-203ENST00000572019 GGPS1O95749 300 aa22.34■■□□□ 1.17
NUP88-203ENST00000572019 UBA1P22314 1058 aaKnown RBP22.34■■□□□ 1.17
NUP88-203ENST00000572019 THPOP40225 353 aa22.34■■□□□ 1.17
NUP88-203ENST00000572019 GHRHRQ02643 423 aa22.34■■□□□ 1.17
NUP88-203ENST00000572019 SERINC5Q86VE9 423 aa22.34■■□□□ 1.17
NUP88-203ENST00000572019 TICAM2Q86XR7 235 aa22.34■■□□□ 1.17
NUP88-203ENST00000572019 PLEKHM2Q8IWE5 1019 aa22.34■■□□□ 1.17
NUP88-203ENST00000572019 MYOCDQ8IZQ8 938 aa22.34■■□□□ 1.17
NUP88-203ENST00000572019 MTMR8Q96EF0 704 aa22.34■■□□□ 1.17
NUP88-203ENST00000572019 SPATA33Q96N06 139 aa22.34■■□□□ 1.17
NUP88-203ENST00000572019 HTRA4P83105 476 aaPredicted RBP22.33■■□□□ 1.17
NUP88-203ENST00000572019 PGM5Q15124 567 aa22.33■■□□□ 1.17
NUP88-203ENST00000572019 LEXMQ3ZCV2 418 aa22.33■■□□□ 1.17
NUP88-203ENST00000572019 STOX1Q6ZVD7 989 aa22.33■■□□□ 1.17
NUP88-203ENST00000572019 FAM178BQ8IXR5 827 aa22.33■■□□□ 1.17
NUP88-203ENST00000572019 FBXO22Q8NEZ5 403 aa22.33■■□□□ 1.17
NUP88-203ENST00000572019 AMNQ9BXJ7 453 aa22.33■■□□□ 1.17
NUP88-203ENST00000572019 HCN4Q9Y3Q4 1203 aa22.33■■□□□ 1.17
NUP88-203ENST00000572019 SEC23AQ15436 765 aa22.32■■□□□ 1.16
NUP88-203ENST00000572019 PLEKHG4Q58EX7 1191 aa22.32■■□□□ 1.16
NUP88-203ENST00000572019 CYB5R4Q7L1T6 521 aa22.32■■□□□ 1.16
NUP88-203ENST00000572019 VSIG10LQ86VR7 867 aa22.32■■□□□ 1.16
NUP88-203ENST00000572019 SP7Q8TDD2 431 aaPredicted RBP22.32■■□□□ 1.16
NUP88-203ENST00000572019 MAD2L2Q9UI95 211 aa22.32■■□□□ 1.16
NUP88-203ENST00000572019 INSL6Q9Y581 213 aa22.32■■□□□ 1.16
NUP88-203ENST00000572019 RALGAPA2Q2PPJ7 1873 aa22.32■■□□□ 1.16
NUP88-203ENST00000572019 RSPH10B2B2RC85 870 aa22.31■■□□□ 1.16
NUP88-203ENST00000572019 TREHO43280 583 aa22.31■■□□□ 1.16
NUP88-203ENST00000572019 EFCAB14O75071 495 aa22.31■■□□□ 1.16
NUP88-203ENST00000572019 PPFIA4O75335 1185 aa22.31■■□□□ 1.16
NUP88-203ENST00000572019 RSPH10BP0C881 870 aa22.31■■□□□ 1.16
NUP88-203ENST00000572019 HOXC8P31273 242 aa22.31■■□□□ 1.16
NUP88-203ENST00000572019 SENP2Q9HC62 589 aa22.31■■□□□ 1.16
NUP88-203ENST00000572019 KAT6AQ92794 2004 aa22.31■■□□□ 1.16
NUP88-203ENST00000572019 LOC101059915A0A1B0GWI6 518 aaPredicted RBP22.3■■□□□ 1.16
NUP88-203ENST00000572019 KLRF2D3W0D1 207 aa22.3■■□□□ 1.16
NUP88-203ENST00000572019 H3BQ06 376 aaPredicted RBP22.3■■□□□ 1.16
NUP88-203ENST00000572019 CTSHP09668 335 aa22.3■■□□□ 1.16
NUP88-203ENST00000572019 SMIM10L2AP0DMW4 78 aa22.3■■□□□ 1.16
NUP88-203ENST00000572019 SMIM10L2BP0DMW5 78 aa22.3■■□□□ 1.16
NUP88-203ENST00000572019 MFAP1P55081 439 aaKnown RBP22.3■■□□□ 1.16
NUP88-203ENST00000572019 EPC2Q52LR7 807 aa22.3■■□□□ 1.16
NUP88-203ENST00000572019 CCDC178Q5BJE1 867 aa22.3■■□□□ 1.16
NUP88-203ENST00000572019 SMC5Q8IY18 1101 aa22.3■■□□□ 1.16
NUP88-203ENST00000572019 GJD3Q8N144 294 aa22.3■■□□□ 1.16
NUP88-203ENST00000572019 PCDHA1Q9Y5I3 950 aa22.3■■□□□ 1.16
NUP88-203ENST00000572019 IGHDP01880 384 aa22.29■■□□□ 1.16
NUP88-203ENST00000572019 AMHP03971 560 aa22.29■■□□□ 1.16
NUP88-203ENST00000572019 LGALS2P05162 132 aa22.29■■□□□ 1.16
NUP88-203ENST00000572019 SEMA3FQ13275 785 aa22.29■■□□□ 1.16
NUP88-203ENST00000572019 PTCRAQ6ISU1 281 aaPredicted RBP22.29■■□□□ 1.16
NUP88-203ENST00000572019 FCHSD1Q86WN1 690 aa22.29■■□□□ 1.16
NUP88-203ENST00000572019 TRIM50Q86XT4 487 aa22.29■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms