RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 SNAI1O95863 264 aaPredicted RBP23.52■■□□□ 1.36
VPS53-210ENST00000571456 NR3C2P08235 984 aa23.52■■□□□ 1.36
VPS53-210ENST00000571456 PPM1EQ8WY54 764 aa23.52■■□□□ 1.36
VPS53-210ENST00000571456 PHF20Q9BVI0 1012 aa23.52■■□□□ 1.36
VPS53-210ENST00000571456 ASTN1O14525 1302 aa23.52■■□□□ 1.36
VPS53-210ENST00000571456 KIAA1217Q5T5P2 1943 aa23.51■■□□□ 1.35
VPS53-210ENST00000571456 LRRC37A2A6NM11 1700 aa23.51■■□□□ 1.35
VPS53-210ENST00000571456 CCND2P30279 289 aa23.51■■□□□ 1.35
VPS53-210ENST00000571456 EPHB4P54760 987 aa23.51■■□□□ 1.35
VPS53-210ENST00000571456 ACVR2BQ13705 512 aa23.51■■□□□ 1.35
VPS53-210ENST00000571456 PGM5Q15124 567 aa23.51■■□□□ 1.35
VPS53-210ENST00000571456 C1orf53Q5VUE5 145 aa23.51■■□□□ 1.35
VPS53-210ENST00000571456 VSIG10LQ86VR7 867 aa23.51■■□□□ 1.35
VPS53-210ENST00000571456 BLIDQ8IZY5 108 aa23.51■■□□□ 1.35
VPS53-210ENST00000571456 PCDHA6Q9UN73 950 aa23.51■■□□□ 1.35
VPS53-210ENST00000571456 SMC3Q9UQE7 1217 aa23.51■■□□□ 1.35
VPS53-210ENST00000571456 PCDHA8Q9Y5H6 950 aa23.51■■□□□ 1.35
VPS53-210ENST00000571456 CHD9Q3L8U1 2897 aa23.5■■□□□ 1.35
VPS53-210ENST00000571456 HSFX4A0A1B0GTS1 333 aaPredicted RBP23.5■■□□□ 1.35
VPS53-210ENST00000571456 HSFX3A0A1B0GWH4 333 aaPredicted RBP23.5■■□□□ 1.35
VPS53-210ENST00000571456 SEPT4O43236 478 aa23.5■■□□□ 1.35
VPS53-210ENST00000571456 AKR1A1P14550 325 aa23.5■■□□□ 1.35
VPS53-210ENST00000571456 EIF2AK2P19525 551 aaKnown RBP23.5■■□□□ 1.35
VPS53-210ENST00000571456 MRPS5P82675 430 aaKnown RBP23.5■■□□□ 1.35
VPS53-210ENST00000571456 SAFBQ15424 915 aaKnown RBP eCLIP23.5■■□□□ 1.35
VPS53-210ENST00000571456 PCNX4Q63HM2 1172 aa23.5■■□□□ 1.35
VPS53-210ENST00000571456 KCNV1Q6PIU1 500 aa23.5■■□□□ 1.35
VPS53-210ENST00000571456 TCF20Q9UGU0 1960 aaKnown RBP23.5■■□□□ 1.35
VPS53-210ENST00000571456 TLE2Q04725 743 aa23.49■■□□□ 1.35
VPS53-210ENST00000571456 UBE2SQ16763 222 aa23.49■■□□□ 1.35
VPS53-210ENST00000571456 GNPTABQ3T906 1256 aa23.49■■□□□ 1.35
VPS53-210ENST00000571456 IQSEC1Q6DN90 963 aa23.49■■□□□ 1.35
VPS53-210ENST00000571456 C8orf76Q96K31 380 aa23.49■■□□□ 1.35
VPS53-210ENST00000571456 AIFM3Q96NN9 605 aa23.49■■□□□ 1.35
VPS53-210ENST00000571456 PURBQ96QR8 312 aaKnown RBP23.49■■□□□ 1.35
VPS53-210ENST00000571456 GAS2L1Q99501 681 aaPredicted RBP23.49■■□□□ 1.35
VPS53-210ENST00000571456 ANO3Q9BYT9 981 aa23.49■■□□□ 1.35
VPS53-210ENST00000571456 FAM184BQ9ULE4 1060 aa23.49■■□□□ 1.35
VPS53-210ENST00000571456 MYCNP04198 464 aaPredicted RBP23.48■■□□□ 1.35
VPS53-210ENST00000571456 ZNF865P0CJ78 1059 aaPredicted RBP23.48■■□□□ 1.35
VPS53-210ENST00000571456 PDIA4P13667 645 aaKnown RBP23.48■■□□□ 1.35
VPS53-210ENST00000571456 ITGB8P26012 769 aa23.48■■□□□ 1.35
VPS53-210ENST00000571456 SREBF1P36956 1147 aa23.48■■□□□ 1.35
VPS53-210ENST00000571456 ADCYAP1R1P41586 468 aa23.48■■□□□ 1.35
VPS53-210ENST00000571456 KRT25Q7Z3Z0 450 aa23.48■■□□□ 1.35
VPS53-210ENST00000571456 SCFD2Q8WU76 684 aa23.48■■□□□ 1.35
VPS53-210ENST00000571456 TIFAQ96CG3 184 aa23.48■■□□□ 1.35
VPS53-210ENST00000571456 C1QTNF1Q9BXJ1 281 aa23.48■■□□□ 1.35
VPS53-210ENST00000571456 KATNBL1Q9H079 304 aa23.48■■□□□ 1.35
VPS53-210ENST00000571456 RBM47A0AV96 593 aaKnown RBP23.47■■□□□ 1.35
VPS53-210ENST00000571456 NKRFO15226 690 aaKnown RBP eCLIP23.47■■□□□ 1.35
VPS53-210ENST00000571456 MMP1P03956 469 aa23.47■■□□□ 1.35
VPS53-210ENST00000571456 PDCP20941 246 aa23.47■■□□□ 1.35
VPS53-210ENST00000571456 KRT2P35908 639 aa23.47■■□□□ 1.35
VPS53-210ENST00000571456 BECN1Q14457 450 aa23.47■■□□□ 1.35
VPS53-210ENST00000571456 ANO1Q5XXA6 986 aa23.47■■□□□ 1.35
VPS53-210ENST00000571456 FBXO18Q8NFZ0 1043 aa23.47■■□□□ 1.35
VPS53-210ENST00000571456 FERMT2Q96AC1 680 aa23.47■■□□□ 1.35
VPS53-210ENST00000571456 CDHR1Q96JP9 859 aa23.47■■□□□ 1.35
VPS53-210ENST00000571456 ZHX1Q9UKY1 873 aaPredicted RBP23.47■■□□□ 1.35
VPS53-210ENST00000571456 ARIH1Q9Y4X5 557 aaPredicted RBP23.47■■□□□ 1.35
VPS53-210ENST00000571456 M0R2N6 131 aa23.46■■□□□ 1.35
VPS53-210ENST00000571456 MAFGO15525 162 aa23.46■■□□□ 1.35
VPS53-210ENST00000571456 TGFB3P10600 412 aa23.46■■□□□ 1.35
VPS53-210ENST00000571456 GJB2P29033 226 aa23.46■■□□□ 1.35
VPS53-210ENST00000571456 KRT40Q6A162 431 aa23.46■■□□□ 1.35
VPS53-210ENST00000571456 Q9Y3F1 56 aa23.46■■□□□ 1.35
VPS53-210ENST00000571456 CYP3A4P08684 503 aa23.45■■□□□ 1.34
VPS53-210ENST00000571456 CLTBP09497 229 aa23.45■■□□□ 1.34
VPS53-210ENST00000571456 RAG1P15918 1043 aa23.45■■□□□ 1.34
VPS53-210ENST00000571456 USP11P51784 963 aa23.45■■□□□ 1.34
VPS53-210ENST00000571456 FPGSQ05932 587 aa23.45■■□□□ 1.34
VPS53-210ENST00000571456 TTLL4Q14679 1199 aa23.45■■□□□ 1.34
VPS53-210ENST00000571456 NPY5RQ15761 445 aa23.45■■□□□ 1.34
VPS53-210ENST00000571456 JAKMIP3Q5VZ66 844 aa23.45■■□□□ 1.34
VPS53-210ENST00000571456 NLRX1Q86UT6 975 aa23.45■■□□□ 1.34
VPS53-210ENST00000571456 NAP1L4Q99733 375 aaKnown RBP23.45■■□□□ 1.34
VPS53-210ENST00000571456 KCNJ14Q9UNX9 436 aa23.45■■□□□ 1.34
VPS53-210ENST00000571456 MYH7BA7E2Y1 1941 aa23.45■■□□□ 1.34
VPS53-210ENST00000571456 CCDC194A0A1B0GVG4 234 aa23.44■■□□□ 1.34
VPS53-210ENST00000571456 KIAA0355O15063 1070 aa23.44■■□□□ 1.34
VPS53-210ENST00000571456 HSP90AA1P07900 732 aaKnown RBP23.44■■□□□ 1.34
VPS53-210ENST00000571456 RARBP10826 455 aa23.44■■□□□ 1.34
VPS53-210ENST00000571456 MYCLP12524 364 aaPredicted RBP23.44■■□□□ 1.34
VPS53-210ENST00000571456 LRRC41Q15345 812 aa23.44■■□□□ 1.34
VPS53-210ENST00000571456 CCDC144BQ3MJ40 725 aa23.44■■□□□ 1.34
VPS53-210ENST00000571456 TAPT1Q6NXT6 567 aa23.44■■□□□ 1.34
VPS53-210ENST00000571456 GPRASP2Q96D09 838 aa23.44■■□□□ 1.34
VPS53-210ENST00000571456 INPP4AQ96PE3 977 aaPredicted RBP23.44■■□□□ 1.34
VPS53-210ENST00000571456 MUC6Q6W4X9 2439 aa23.43■■□□□ 1.34
VPS53-210ENST00000571456 REV3LO60673 3130 aa23.43■■□□□ 1.34
VPS53-210ENST00000571456 DUSP11O75319 330 aaKnown RBP23.43■■□□□ 1.34
VPS53-210ENST00000571456 ICAM3P32942 547 aa23.43■■□□□ 1.34
VPS53-210ENST00000571456 ARHGAP4P98171 946 aa23.43■■□□□ 1.34
VPS53-210ENST00000571456 NONOQ15233 471 aaKnown RBP eCLIP23.43■■□□□ 1.34
VPS53-210ENST00000571456 PRAMEF19Q5SWL8 479 aa23.43■■□□□ 1.34
VPS53-210ENST00000571456 NIPA1Q7RTP0 329 aa23.43■■□□□ 1.34
VPS53-210ENST00000571456 FBXO16Q8IX29 292 aaPredicted RBP23.43■■□□□ 1.34
VPS53-210ENST00000571456 CRYGNQ8WXF5 182 aa23.43■■□□□ 1.34
VPS53-210ENST00000571456 FOXP1Q9H334 677 aaPredicted RBP23.43■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 71.5 ms