RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 SIGLEC14Q08ET2 396 aa13.02□□□□□ -0.33
VPS53-207ENST00000570510 HYAL1Q12794 435 aa13.02□□□□□ -0.33
VPS53-207ENST00000570510 STXBP2Q15833 593 aa13.02□□□□□ -0.33
VPS53-207ENST00000570510 CTC1Q2NKJ3 1217 aa13.02□□□□□ -0.33
VPS53-207ENST00000570510 TTBK2Q6IQ55 1244 aa13.02□□□□□ -0.33
VPS53-207ENST00000570510 ZBTB33Q86T24 672 aa13.02□□□□□ -0.33
VPS53-207ENST00000570510 POTEDQ86YR6 584 aa13.02□□□□□ -0.33
VPS53-207ENST00000570510 GPATCH3Q96I76 525 aa13.02□□□□□ -0.33
VPS53-207ENST00000570510 TLR9Q9NR96 1032 aa13.02□□□□□ -0.33
VPS53-207ENST00000570510 TOMM22Q9NS69 142 aa13.02□□□□□ -0.33
VPS53-207ENST00000570510 FRMPD2Q68DX3 1309 aaPredicted RBP13.02□□□□□ -0.33
VPS53-207ENST00000570510 CACNA1AO00555 2505 aa13.01□□□□□ -0.33
VPS53-207ENST00000570510 NMT2O60551 498 aa13.01□□□□□ -0.33
VPS53-207ENST00000570510 AVPR2P30518 371 aa13.01□□□□□ -0.33
VPS53-207ENST00000570510 BMPR1AP36894 532 aa13.01□□□□□ -0.33
VPS53-207ENST00000570510 ARHGAP1Q07960 439 aa13.01□□□□□ -0.33
VPS53-207ENST00000570510 LAMC2Q13753 1193 aa13.01□□□□□ -0.33
VPS53-207ENST00000570510 MBTPS1Q14703 1052 aa13.01□□□□□ -0.33
VPS53-207ENST00000570510 USH1GQ495M9 461 aa13.01□□□□□ -0.33
VPS53-207ENST00000570510 PLEKHG4Q58EX7 1191 aa13.01□□□□□ -0.33
VPS53-207ENST00000570510 RASGRP2Q7LDG7 609 aa13.01□□□□□ -0.33
VPS53-207ENST00000570510 KBTBD3Q8NAB2 608 aa13.01□□□□□ -0.33
VPS53-207ENST00000570510 NSUN6Q8TEA1 469 aaKnown RBP13.01□□□□□ -0.33
VPS53-207ENST00000570510 CLEC4DQ8WXI8 215 aa13.01□□□□□ -0.33
VPS53-207ENST00000570510 MRVI1Q9Y6F6 885 aa13.01□□□□□ -0.33
VPS53-207ENST00000570510 GRM6O15303 877 aa13□□□□□ -0.33
VPS53-207ENST00000570510 TBX10O75333 385 aa13□□□□□ -0.33
VPS53-207ENST00000570510 TRIM71Q2Q1W2 868 aaKnown RBP13□□□□□ -0.33
VPS53-207ENST00000570510 CCDC62Q6P9F0 684 aa13□□□□□ -0.33
VPS53-207ENST00000570510 BTNL9Q6UXG8 535 aa13□□□□□ -0.33
VPS53-207ENST00000570510 PPTC7Q8NI37 304 aa13□□□□□ -0.33
VPS53-207ENST00000570510 ATP6V0A1Q93050 837 aa13□□□□□ -0.33
VPS53-207ENST00000570510 RPGRIP1Q96KN7 1286 aa13□□□□□ -0.33
VPS53-207ENST00000570510 ECHDC1Q9NTX5 307 aa13□□□□□ -0.33
VPS53-207ENST00000570510 TRPC6Q9Y210 931 aa13□□□□□ -0.33
VPS53-207ENST00000570510 TRIOO75962 3097 aa12.99□□□□□ -0.33
VPS53-207ENST00000570510 TECTAO75443 2155 aa12.99□□□□□ -0.33
VPS53-207ENST00000570510 C17orf102A2RUQ5 167 aa12.99□□□□□ -0.33
VPS53-207ENST00000570510 M0R2C6 588 aa12.99□□□□□ -0.33
VPS53-207ENST00000570510 LINC01565O15544 149 aa12.99□□□□□ -0.33
VPS53-207ENST00000570510 CTSHP09668 335 aa12.99□□□□□ -0.33
VPS53-207ENST00000570510 GTF2F1P35269 517 aaKnown RBP eCLIP12.99□□□□□ -0.33
VPS53-207ENST00000570510 ID4P47928 161 aa12.99□□□□□ -0.33
VPS53-207ENST00000570510 ADAM15Q13444 863 aa12.99□□□□□ -0.33
VPS53-207ENST00000570510 ARHGEF16Q5VV41 709 aa12.99□□□□□ -0.33
VPS53-207ENST00000570510 TRAF7Q6Q0C0 670 aa12.99□□□□□ -0.33
VPS53-207ENST00000570510 APBB2Q92870 758 aa12.99□□□□□ -0.33
VPS53-207ENST00000570510 WNT8BQ93098 351 aa12.99□□□□□ -0.33
VPS53-207ENST00000570510 FSD1Q9BTV5 496 aa12.99□□□□□ -0.33
VPS53-207ENST00000570510 LRRCC1Q9C099 1032 aa12.99□□□□□ -0.33
VPS53-207ENST00000570510 INCENPQ9NQS7 918 aa12.99□□□□□ -0.33
VPS53-207ENST00000570510 IL17RBQ9NRM6 502 aa12.99□□□□□ -0.33
VPS53-207ENST00000570510 PTPRZ1P23471 2315 aaPredicted RBP12.99□□□□□ -0.33
VPS53-207ENST00000570510 C5orf67F2Z3F1 127 aa12.98□□□□□ -0.33
VPS53-207ENST00000570510 PPFIA4O75335 1185 aa12.98□□□□□ -0.33
VPS53-207ENST00000570510 F2P00734 622 aa12.98□□□□□ -0.33
VPS53-207ENST00000570510 TOP1P11387 765 aaKnown RBP12.98□□□□□ -0.33
VPS53-207ENST00000570510 NUBP1P53384 320 aa12.98□□□□□ -0.33
VPS53-207ENST00000570510 VCPP55072 806 aaKnown RBP12.98□□□□□ -0.33
VPS53-207ENST00000570510 CTDSPL2Q05D32 466 aa12.98□□□□□ -0.33
VPS53-207ENST00000570510 BTG3Q14201 252 aaPredicted RBP12.98□□□□□ -0.33
VPS53-207ENST00000570510 SERINC5Q86VE9 423 aa12.98□□□□□ -0.33
VPS53-207ENST00000570510 PANK1Q8TE04 598 aa12.98□□□□□ -0.33
VPS53-207ENST00000570510 IWS1Q96ST2 819 aa12.98□□□□□ -0.33
VPS53-207ENST00000570510 RMDN3Q96TC7 470 aa12.98□□□□□ -0.33
VPS53-207ENST00000570510 ALG13Q9NP73 1137 aaKnown RBP12.98□□□□□ -0.33
VPS53-207ENST00000570510 DDX41Q9UJV9 622 aaKnown RBP12.98□□□□□ -0.33
VPS53-207ENST00000570510 C5orf42Q9H799 3197 aa12.98□□□□□ -0.33
VPS53-207ENST00000570510 WDR19Q8NEZ3 1342 aa12.97□□□□□ -0.33
VPS53-207ENST00000570510 LOC730098B7Z3J9 87 aa12.97□□□□□ -0.33
VPS53-207ENST00000570510 EYA4O95677 639 aa12.97□□□□□ -0.33
VPS53-207ENST00000570510 RRP1P56182 461 aaKnown RBP12.97□□□□□ -0.33
VPS53-207ENST00000570510 RRP12Q5JTH9 1297 aaKnown RBP12.97□□□□□ -0.33
VPS53-207ENST00000570510 MCF2L2Q86YR7 1114 aa12.97□□□□□ -0.33
VPS53-207ENST00000570510 RGS22Q8NE09 1264 aa12.97□□□□□ -0.33
VPS53-207ENST00000570510 EMID1Q96A84 441 aaPredicted RBP12.97□□□□□ -0.33
VPS53-207ENST00000570510 SPATA33Q96N06 139 aa12.97□□□□□ -0.33
VPS53-207ENST00000570510 TAAR1Q96RJ0 339 aa12.97□□□□□ -0.33
VPS53-207ENST00000570510 PHF7Q9BWX1 381 aaPredicted RBP12.97□□□□□ -0.33
VPS53-207ENST00000570510 RCAN3Q9UKA8 241 aa12.97□□□□□ -0.33
VPS53-207ENST00000570510 LCTP09848 1927 aa12.96□□□□□ -0.33
VPS53-207ENST00000570510 MYH7P12883 1935 aa12.96□□□□□ -0.33
VPS53-207ENST00000570510 ADGRA3Q8IWK6 1321 aa12.96□□□□□ -0.33
VPS53-207ENST00000570510 LOC101059915A0A1B0GWI6 518 aaPredicted RBP12.96□□□□□ -0.33
VPS53-207ENST00000570510 RBAK-RBAKDNI3L0D1 243 aa12.96□□□□□ -0.33
VPS53-207ENST00000570510 HAS3O00219 553 aa12.96□□□□□ -0.33
VPS53-207ENST00000570510 SORBS3O60504 671 aa12.96□□□□□ -0.33
VPS53-207ENST00000570510 CAND2O75155 1236 aa12.96□□□□□ -0.33
VPS53-207ENST00000570510 EIF3JO75822 258 aaKnown RBP12.96□□□□□ -0.33
VPS53-207ENST00000570510 MMP1P03956 469 aa12.96□□□□□ -0.33
VPS53-207ENST00000570510 GNAT1P11488 350 aa12.96□□□□□ -0.33
VPS53-207ENST00000570510 ASCL5Q7RTU5 278 aa12.96□□□□□ -0.33
VPS53-207ENST00000570510 RBM23Q86U06 439 aaKnown RBP12.96□□□□□ -0.33
VPS53-207ENST00000570510 SMRP1Q8NCR6 262 aa12.96□□□□□ -0.33
VPS53-207ENST00000570510 MICAL1Q8TDZ2 1067 aa12.96□□□□□ -0.33
VPS53-207ENST00000570510 PLVAPQ9BX97 442 aa12.96□□□□□ -0.33
VPS53-207ENST00000570510 USP15Q9Y4E8 981 aaPredicted RBP12.96□□□□□ -0.33
VPS53-207ENST00000570510 MICAL3Q7RTP6 2002 aa12.96□□□□□ -0.34
VPS53-207ENST00000570510 PRR23AA6NEV1 266 aa12.95□□□□□ -0.34
VPS53-207ENST00000570510 PROB1E7EW31 1015 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms