RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 ZNF385BQ569K4 471 aa3.92□□□□□ -1.78
VPS35-208ENST00000568612 MBLAC2Q68D91 279 aa3.92□□□□□ -1.78
VPS35-208ENST00000568612 LDHDQ86WU2 507 aa3.92□□□□□ -1.78
VPS35-208ENST00000568612 NME8Q8N427 588 aa3.92□□□□□ -1.78
VPS35-208ENST00000568612 JMYQ8N9B5 988 aa3.92□□□□□ -1.78
VPS35-208ENST00000568612 FRS2Q8WU20 508 aa3.92□□□□□ -1.78
VPS35-208ENST00000568612 BORCS6Q96GS4 357 aa3.92□□□□□ -1.78
VPS35-208ENST00000568612 SIGLEC10Q96LC7 697 aa3.92□□□□□ -1.78
VPS35-208ENST00000568612 BCAS3Q9H6U6 928 aa3.92□□□□□ -1.78
VPS35-208ENST00000568612 GCM1Q9NP62 436 aa3.92□□□□□ -1.78
VPS35-208ENST00000568612 GOLGA6AQ9NYA3 693 aa3.92□□□□□ -1.78
VPS35-208ENST00000568612 FBLN5Q9UBX5 448 aa3.92□□□□□ -1.78
VPS35-208ENST00000568612 NUDT5Q9UKK9 219 aa3.92□□□□□ -1.78
VPS35-208ENST00000568612 A0A1W2PQU0 124 aa3.91□□□□□ -1.78
VPS35-208ENST00000568612 IQCA1LA6NCM1 817 aa3.91□□□□□ -1.78
VPS35-208ENST00000568612 BTBD11A6QL63 1104 aa3.91□□□□□ -1.78
VPS35-208ENST00000568612 N4BP3O15049 544 aa3.91□□□□□ -1.78
VPS35-208ENST00000568612 CTAGE5O15320 804 aa3.91□□□□□ -1.78
VPS35-208ENST00000568612 SRGAP3O43295 1099 aa3.91□□□□□ -1.78
VPS35-208ENST00000568612 BUB1BO60566 1050 aaPredicted RBP3.91□□□□□ -1.78
VPS35-208ENST00000568612 PPP1R11O60927 126 aaPredicted RBP3.91□□□□□ -1.78
VPS35-208ENST00000568612 COQ9O75208 318 aa3.91□□□□□ -1.78
VPS35-208ENST00000568612 NTRK1P04629 796 aa3.91□□□□□ -1.78
VPS35-208ENST00000568612 ZNF853P0CG23 659 aa3.91□□□□□ -1.78
VPS35-208ENST00000568612 ZSCAN22P10073 491 aaPredicted RBP3.91□□□□□ -1.78
VPS35-208ENST00000568612 GLI4P10075 376 aa3.91□□□□□ -1.78
VPS35-208ENST00000568612 NEFHP12036 1026 aa3.91□□□□□ -1.78
VPS35-208ENST00000568612 PFKLP17858 780 aa3.91□□□□□ -1.78
VPS35-208ENST00000568612 FPR2P25090 351 aa3.91□□□□□ -1.78
VPS35-208ENST00000568612 POLD1P28340 1107 aa3.91□□□□□ -1.78
VPS35-208ENST00000568612 GRIA2P42262 883 aa3.91□□□□□ -1.78
VPS35-208ENST00000568612 GFRA1P56159 465 aa3.91□□□□□ -1.78
VPS35-208ENST00000568612 RPL11P62913 178 aaKnown RBP3.91□□□□□ -1.78
VPS35-208ENST00000568612 CBX2Q14781 532 aaPredicted RBP3.91□□□□□ -1.78
VPS35-208ENST00000568612 ZRSR2Q15696 482 aaKnown RBP3.91□□□□□ -1.78
VPS35-208ENST00000568612 WWC2Q6AWC2 1192 aa3.91□□□□□ -1.78
VPS35-208ENST00000568612 IQCEQ6IPM2 695 aa3.91□□□□□ -1.78
VPS35-208ENST00000568612 DDX46Q7L014 1031 aaKnown RBP3.91□□□□□ -1.78
VPS35-208ENST00000568612 CREBRFQ8IUR6 639 aa3.91□□□□□ -1.78
VPS35-208ENST00000568612 TMEM145Q8NBT3 493 aa3.91□□□□□ -1.78
VPS35-208ENST00000568612 MNS1Q8NEH6 495 aa3.91□□□□□ -1.78
VPS35-208ENST00000568612 NLGN2Q8NFZ4 835 aa3.91□□□□□ -1.78
VPS35-208ENST00000568612 NPLOC4Q8TAT6 608 aa3.91□□□□□ -1.78
VPS35-208ENST00000568612 ALG3Q92685 438 aa3.91□□□□□ -1.78
VPS35-208ENST00000568612 CCDC140Q96MF4 163 aa3.91□□□□□ -1.78
VPS35-208ENST00000568612 C8orf37Q96NL8 207 aa3.91□□□□□ -1.78
VPS35-208ENST00000568612 MMP19Q99542 508 aa3.91□□□□□ -1.78
VPS35-208ENST00000568612 PAIP2Q9BPZ3 127 aaKnown RBP3.91□□□□□ -1.78
VPS35-208ENST00000568612 IER2Q9BTL4 223 aa3.91□□□□□ -1.78
VPS35-208ENST00000568612 MED4Q9NPJ6 270 aa3.91□□□□□ -1.78
VPS35-208ENST00000568612 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP3.91□□□□□ -1.78
VPS35-208ENST00000568612 CALCOCO1Q9P1Z2 691 aa3.91□□□□□ -1.78
VPS35-208ENST00000568612 TMEFF2Q9UIK5 374 aaPredicted RBP3.91□□□□□ -1.78
VPS35-208ENST00000568612 FAN1Q9Y2M0 1017 aa3.91□□□□□ -1.78
VPS35-208ENST00000568612 SIT1Q9Y3P8 196 aa3.91□□□□□ -1.78
VPS35-208ENST00000568612 NUB1Q9Y5A7 615 aa3.91□□□□□ -1.78
VPS35-208ENST00000568612 TIMM13Q9Y5L4 95 aaPredicted RBP3.91□□□□□ -1.78
VPS35-208ENST00000568612 C22orf46C9J442 243 aa3.9□□□□□ -1.79
VPS35-208ENST00000568612 PRODHO43272 600 aa3.9□□□□□ -1.79
VPS35-208ENST00000568612 XRCC6P12956 609 aaKnown RBP eCLIP3.9□□□□□ -1.79
VPS35-208ENST00000568612 BCL6P41182 706 aa3.9□□□□□ -1.79
VPS35-208ENST00000568612 LIMS1P48059 325 aa3.9□□□□□ -1.79
VPS35-208ENST00000568612 TDO2P48775 406 aa3.9□□□□□ -1.79
VPS35-208ENST00000568612 MRE11P49959 708 aa3.9□□□□□ -1.79
VPS35-208ENST00000568612 GTF2A1P52655 376 aaPredicted RBP3.9□□□□□ -1.79
VPS35-208ENST00000568612 CYP4F3Q08477 520 aa3.9□□□□□ -1.79
VPS35-208ENST00000568612 KCNAB2Q13303 367 aa3.9□□□□□ -1.79
VPS35-208ENST00000568612 TARBP2Q15633 366 aaKnown RBP3.9□□□□□ -1.79
VPS35-208ENST00000568612 C1QTNF12Q5T7M4 302 aa3.9□□□□□ -1.79
VPS35-208ENST00000568612 E4F1Q66K89 784 aaPredicted RBP3.9□□□□□ -1.79
VPS35-208ENST00000568612 CNKSR3Q6P9H4 555 aa3.9□□□□□ -1.79
VPS35-208ENST00000568612 USP53Q70EK8 1073 aa3.9□□□□□ -1.79
VPS35-208ENST00000568612 CEP68Q76N32 757 aa3.9□□□□□ -1.79
VPS35-208ENST00000568612 CCDC103Q8IW40 242 aa3.9□□□□□ -1.79
VPS35-208ENST00000568612 PMFBP1Q8TBY8 1022 aa3.9□□□□□ -1.79
VPS35-208ENST00000568612 PANK1Q8TE04 598 aa3.9□□□□□ -1.79
VPS35-208ENST00000568612 KCTD13Q8WZ19 329 aa3.9□□□□□ -1.79
VPS35-208ENST00000568612 DPF3Q92784 378 aa3.9□□□□□ -1.79
VPS35-208ENST00000568612 TRMT2BQ96GJ1 504 aaKnown RBP3.9□□□□□ -1.79
VPS35-208ENST00000568612 PEX11GQ96HA9 241 aa3.9□□□□□ -1.79
VPS35-208ENST00000568612 MTA3Q9BTC8 594 aa3.9□□□□□ -1.79
VPS35-208ENST00000568612 AARSD1Q9BTE6 412 aaKnown RBP3.9□□□□□ -1.79
VPS35-208ENST00000568612 HIRIP3Q9BW71 556 aaPredicted RBP3.9□□□□□ -1.79
VPS35-208ENST00000568612 AP5M1Q9H0R1 490 aa3.9□□□□□ -1.79
VPS35-208ENST00000568612 PFDN2Q9UHV9 154 aa3.9□□□□□ -1.79
VPS35-208ENST00000568612 PLA2G2DQ9UNK4 145 aa3.9□□□□□ -1.79
VPS35-208ENST00000568612 SMC3Q9UQE7 1217 aa3.9□□□□□ -1.79
VPS35-208ENST00000568612 COA3Q9Y2R0 106 aaPredicted RBP3.9□□□□□ -1.79
VPS35-208ENST00000568612 PAXBP1Q9Y5B6 917 aa3.9□□□□□ -1.79
VPS35-208ENST00000568612 PCDHA2Q9Y5H9 948 aa3.9□□□□□ -1.79
VPS35-208ENST00000568612 SCAPERQ9BY12 1400 aa3.89□□□□□ -1.79
VPS35-208ENST00000568612 CCDC189A1A4V9 331 aa3.89□□□□□ -1.79
VPS35-208ENST00000568612 MPHOSPH10O00566 681 aaKnown RBP3.89□□□□□ -1.79
VPS35-208ENST00000568612 PPP1R12AO14974 1030 aaPredicted RBP3.89□□□□□ -1.79
VPS35-208ENST00000568612 FRAT2O75474 233 aaPredicted RBP3.89□□□□□ -1.79
VPS35-208ENST00000568612 SCG5P05408 212 aa3.89□□□□□ -1.79
VPS35-208ENST00000568612 LCP1P13796 627 aa3.89□□□□□ -1.79
VPS35-208ENST00000568612 LTBRP36941 435 aa3.89□□□□□ -1.79
VPS35-208ENST00000568612 MC3RP41968 323 aa3.89□□□□□ -1.79
VPS35-208ENST00000568612 AFF3P51826 1226 aaKnown RBP3.89□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms