RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 BCAS3Q9H6U6 928 aa17.28■□□□□ 0.36
VPS39-210ENST00000568357 TBX21Q9UL17 535 aa17.28■□□□□ 0.36
VPS39-210ENST00000568357 TTC28Q96AY4 2481 aa17.28■□□□□ 0.36
VPS39-210ENST00000568357 NID2Q14112 1375 aa17.28■□□□□ 0.36
VPS39-210ENST00000568357 SORBS3O60504 671 aa17.27■□□□□ 0.36
VPS39-210ENST00000568357 KPNA6O60684 536 aa17.27■□□□□ 0.36
VPS39-210ENST00000568357 MMP3P08254 477 aa17.27■□□□□ 0.36
VPS39-210ENST00000568357 TGFB3P10600 412 aa17.27■□□□□ 0.36
VPS39-210ENST00000568357 NAPAP54920 295 aa17.27■□□□□ 0.36
VPS39-210ENST00000568357 LAMC2Q13753 1193 aa17.27■□□□□ 0.36
VPS39-210ENST00000568357 MYSM1Q5VVJ2 828 aa17.27■□□□□ 0.36
VPS39-210ENST00000568357 PCNX4Q63HM2 1172 aa17.27■□□□□ 0.36
VPS39-210ENST00000568357 KCNV1Q6PIU1 500 aa17.27■□□□□ 0.36
VPS39-210ENST00000568357 DHX37Q8IY37 1157 aaKnown RBP17.27■□□□□ 0.36
VPS39-210ENST00000568357 SYMPKQ92797 1274 aaKnown RBP17.27■□□□□ 0.36
VPS39-210ENST00000568357 EMID1Q96A84 441 aaPredicted RBP17.27■□□□□ 0.36
VPS39-210ENST00000568357 INPP4AQ96PE3 977 aaPredicted RBP17.27■□□□□ 0.36
VPS39-210ENST00000568357 TRPV6Q9H1D0 765 aa17.27■□□□□ 0.36
VPS39-210ENST00000568357 NCOA5Q9HCD5 579 aaKnown RBP17.27■□□□□ 0.36
VPS39-210ENST00000568357 RIC8AQ9NPQ8 531 aa17.27■□□□□ 0.36
VPS39-210ENST00000568357 PDRG1Q9NUG6 133 aa17.27■□□□□ 0.36
VPS39-210ENST00000568357 BARHL2Q9NY43 387 aa17.27■□□□□ 0.36
VPS39-210ENST00000568357 PCDHA6Q9UN73 950 aa17.27■□□□□ 0.36
VPS39-210ENST00000568357 PCDHA8Q9Y5H6 950 aa17.27■□□□□ 0.36
VPS39-210ENST00000568357 SMCO2A6NFE2 343 aa17.26■□□□□ 0.35
VPS39-210ENST00000568357 SPATA31C2B4DYI2 1134 aa17.26■□□□□ 0.35
VPS39-210ENST00000568357 PRPF3O43395 683 aaKnown RBP17.26■□□□□ 0.35
VPS39-210ENST00000568357 STAM2O75886 525 aa17.26■□□□□ 0.35
VPS39-210ENST00000568357 FOSL2P15408 326 aa17.26■□□□□ 0.35
VPS39-210ENST00000568357 RAG1P15918 1043 aa17.26■□□□□ 0.35
VPS39-210ENST00000568357 ICAM3P32942 547 aa17.26■□□□□ 0.35
VPS39-210ENST00000568357 SEMA3FQ13275 785 aa17.26■□□□□ 0.35
VPS39-210ENST00000568357 PKN1Q16512 942 aa17.26■□□□□ 0.35
VPS39-210ENST00000568357 PFKFB3Q16875 520 aaPredicted RBP17.26■□□□□ 0.35
VPS39-210ENST00000568357 NBPF20Q3BBV1 942 aa17.26■□□□□ 0.35
VPS39-210ENST00000568357 C9orf50Q5SZB4 431 aa17.26■□□□□ 0.35
VPS39-210ENST00000568357 CELF3Q5SZQ8 465 aaKnown RBP17.26■□□□□ 0.35
VPS39-210ENST00000568357 PHKBQ93100 1093 aa17.26■□□□□ 0.35
VPS39-210ENST00000568357 SEZ6LQ9BYH1 1024 aa17.26■□□□□ 0.35
VPS39-210ENST00000568357 B4GALT4O60513 344 aa17.25■□□□□ 0.35
VPS39-210ENST00000568357 GGPS1O95749 300 aa17.25■□□□□ 0.35
VPS39-210ENST00000568357 TIMP1P01033 207 aa17.25■□□□□ 0.35
VPS39-210ENST00000568357 SCG2P13521 617 aa17.25■□□□□ 0.35
VPS39-210ENST00000568357 UBA1P22314 1058 aaKnown RBP17.25■□□□□ 0.35
VPS39-210ENST00000568357 ANAPC15P60006 121 aa17.25■□□□□ 0.35
VPS39-210ENST00000568357 SHHQ15465 462 aa17.25■□□□□ 0.35
VPS39-210ENST00000568357 GNPTABQ3T906 1256 aa17.25■□□□□ 0.35
VPS39-210ENST00000568357 PPP1R18Q6NYC8 613 aa17.25■□□□□ 0.35
VPS39-210ENST00000568357 XRRA1Q6P2D8 792 aa17.25■□□□□ 0.35
VPS39-210ENST00000568357 KAT2BQ92831 832 aa17.25■□□□□ 0.35
VPS39-210ENST00000568357 ZNF274Q96GC6 653 aaPredicted RBP17.25■□□□□ 0.35
VPS39-210ENST00000568357 ALDH8A1Q9H2A2 487 aaPredicted RBP17.25■□□□□ 0.35
VPS39-210ENST00000568357 SPDYE3A6NKU9 549 aa17.24■□□□□ 0.35
VPS39-210ENST00000568357 hCG_1984214I3L0E3 225 aa17.24■□□□□ 0.35
VPS39-210ENST00000568357 TNFRSF10AO00220 468 aa17.24■□□□□ 0.35
VPS39-210ENST00000568357 ADAMTS3O15072 1205 aa17.24■□□□□ 0.35
VPS39-210ENST00000568357 TLR3O15455 904 aaKnown RBP17.24■□□□□ 0.35
VPS39-210ENST00000568357 IFNAR1P17181 557 aa17.24■□□□□ 0.35
VPS39-210ENST00000568357 ADCY7P51828 1080 aa17.24■□□□□ 0.35
VPS39-210ENST00000568357 EPHB4P54760 987 aa17.24■□□□□ 0.35
VPS39-210ENST00000568357 DGKDQ16760 1214 aa17.24■□□□□ 0.35
VPS39-210ENST00000568357 HSDL1Q3SXM5 330 aa17.24■□□□□ 0.35
VPS39-210ENST00000568357 ZNF713Q8N859 430 aaPredicted RBP17.24■□□□□ 0.35
VPS39-210ENST00000568357 USP38Q8NB14 1042 aa17.24■□□□□ 0.35
VPS39-210ENST00000568357 PPTC7Q8NI37 304 aa17.24■□□□□ 0.35
VPS39-210ENST00000568357 IL17RAQ96F46 866 aa17.24■□□□□ 0.35
VPS39-210ENST00000568357 PGBD1Q96JS3 809 aa17.24■□□□□ 0.35
VPS39-210ENST00000568357 SPATA33Q96N06 139 aa17.24■□□□□ 0.35
VPS39-210ENST00000568357 TRMT13Q9NUP7 481 aaKnown RBP17.24■□□□□ 0.35
VPS39-210ENST00000568357 TMEM260Q9NX78 707 aa17.24■□□□□ 0.35
VPS39-210ENST00000568357 FIBPO43427 364 aa17.23■□□□□ 0.35
VPS39-210ENST00000568357 PPFIA4O75335 1185 aa17.23■□□□□ 0.35
VPS39-210ENST00000568357 HOXD8P13378 290 aaPredicted RBP17.23■□□□□ 0.35
VPS39-210ENST00000568357 ITGB5P18084 799 aa17.23■□□□□ 0.35
VPS39-210ENST00000568357 CHMP4BP1P59074 171 aa17.23■□□□□ 0.35
VPS39-210ENST00000568357 NFRKBQ6P4R8 1299 aa17.23■□□□□ 0.35
VPS39-210ENST00000568357 SLC26A6Q9BXS9 759 aa17.23■□□□□ 0.35
VPS39-210ENST00000568357 MLXIPQ9HAP2 919 aa17.23■□□□□ 0.35
VPS39-210ENST00000568357 TELO2Q9Y4R8 837 aa17.23■□□□□ 0.35
VPS39-210ENST00000568357 UBIAD1Q9Y5Z9 338 aa17.23■□□□□ 0.35
VPS39-210ENST00000568357 ATP9AO75110 1047 aa17.22■□□□□ 0.35
VPS39-210ENST00000568357 CYP2C18P33260 490 aa17.22■□□□□ 0.35
VPS39-210ENST00000568357 PLA2G5P39877 138 aa17.22■□□□□ 0.35
VPS39-210ENST00000568357 CLK2P49760 499 aaKnown RBP17.22■□□□□ 0.35
VPS39-210ENST00000568357 STK3Q13188 491 aa17.22■□□□□ 0.35
VPS39-210ENST00000568357 FAM47CQ5HY64 1035 aa17.22■□□□□ 0.35
VPS39-210ENST00000568357 TJAP1Q5JTD0 557 aa17.22■□□□□ 0.35
VPS39-210ENST00000568357 MFSD5Q6N075 450 aa17.22■□□□□ 0.35
VPS39-210ENST00000568357 CYFIP1Q7L576 1253 aa17.22■□□□□ 0.35
VPS39-210ENST00000568357 TEX2Q8IWB9 1127 aa17.22■□□□□ 0.35
VPS39-210ENST00000568357 RNF26Q9BY78 433 aaPredicted RBP17.22■□□□□ 0.35
VPS39-210ENST00000568357 PPP1R12CQ9BZL4 782 aa17.22■□□□□ 0.35
VPS39-210ENST00000568357 TPCN1Q9ULQ1 816 aa17.22■□□□□ 0.35
VPS39-210ENST00000568357 UMODL1Q5DID0 1318 aa17.21■□□□□ 0.35
VPS39-210ENST00000568357 FOSP01100 380 aaPredicted RBP17.21■□□□□ 0.35
VPS39-210ENST00000568357 ZNF286BP0CG31 522 aa17.21■□□□□ 0.35
VPS39-210ENST00000568357 CYP2C9P11712 490 aa17.21■□□□□ 0.35
VPS39-210ENST00000568357 AKAP17AQ02040 695 aaKnown RBP17.21■□□□□ 0.35
VPS39-210ENST00000568357 FPGSQ05932 587 aa17.21■□□□□ 0.35
VPS39-210ENST00000568357 NEDD9Q14511 834 aa17.21■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms