RNA–Protein interactions for RNA: ENST00000568291.2

SF3B3-211, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 1,067 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-211ENST00000568291 LZTS2Q9BRK4 669 aa10.96□□□□□ -0.65
SF3B3-211ENST00000568291 PDCD2LQ9BRP1 358 aa10.96□□□□□ -0.65
SF3B3-211ENST00000568291 MTIF3Q9H2K0 278 aaKnown RBP10.96□□□□□ -0.65
SF3B3-211ENST00000568291 ZSWIM6Q9HCJ5 1215 aa10.96□□□□□ -0.65
SF3B3-211ENST00000568291 IL23AQ9NPF7 189 aa10.96□□□□□ -0.65
SF3B3-211ENST00000568291 CNTNAP5Q8WYK1 1306 aa10.95□□□□□ -0.66
SF3B3-211ENST00000568291 METAP2P50579 478 aaKnown RBP eCLIP10.95□□□□□ -0.66
SF3B3-211ENST00000568291 ITGA7Q13683 1181 aa10.95□□□□□ -0.66
SF3B3-211ENST00000568291 TOB2Q14106 344 aaPredicted RBP10.95□□□□□ -0.66
SF3B3-211ENST00000568291 PGM5Q15124 567 aa10.95□□□□□ -0.66
SF3B3-211ENST00000568291 PPP2R5BQ15173 497 aa10.95□□□□□ -0.66
SF3B3-211ENST00000568291 RAB30Q15771 203 aa10.95□□□□□ -0.66
SF3B3-211ENST00000568291 WWC2Q6AWC2 1192 aa10.95□□□□□ -0.66
SF3B3-211ENST00000568291 CCDC62Q6P9F0 684 aa10.95□□□□□ -0.66
SF3B3-211ENST00000568291 RUFY3Q7L099 469 aa10.95□□□□□ -0.66
SF3B3-211ENST00000568291 SMARCC2Q8TAQ2 1214 aa10.95□□□□□ -0.66
SF3B3-211ENST00000568291 SCFD2Q8WU76 684 aa10.95□□□□□ -0.66
SF3B3-211ENST00000568291 AFG1LQ8WV93 481 aa10.95□□□□□ -0.66
SF3B3-211ENST00000568291 HERVK_113Q902F9 699 aa10.95□□□□□ -0.66
SF3B3-211ENST00000568291 PHKBQ93100 1093 aa10.95□□□□□ -0.66
SF3B3-211ENST00000568291 TRPV6Q9H1D0 765 aa10.95□□□□□ -0.66
SF3B3-211ENST00000568291 PRDM12Q9H4Q4 367 aa10.95□□□□□ -0.66
SF3B3-211ENST00000568291 PSTPIP2Q9H939 334 aa10.95□□□□□ -0.66
SF3B3-211ENST00000568291 TMEM260Q9NX78 707 aa10.95□□□□□ -0.66
SF3B3-211ENST00000568291 TELO2Q9Y4R8 837 aa10.95□□□□□ -0.66
SF3B3-211ENST00000568291 KIAA1217Q5T5P2 1943 aa10.95□□□□□ -0.66
SF3B3-211ENST00000568291 TRIP12Q14669 1992 aaPredicted RBP10.94□□□□□ -0.66
SF3B3-211ENST00000568291 PTPRSQ13332 1948 aa10.94□□□□□ -0.66
SF3B3-211ENST00000568291 B4DLN1 442 aa10.94□□□□□ -0.66
SF3B3-211ENST00000568291 B4GALT4O60513 344 aa10.94□□□□□ -0.66
SF3B3-211ENST00000568291 EIF3JO75822 258 aaKnown RBP10.94□□□□□ -0.66
SF3B3-211ENST00000568291 PSMA5P28066 241 aa10.94□□□□□ -0.66
SF3B3-211ENST00000568291 SMARCA1P28370 1054 aa10.94□□□□□ -0.66
SF3B3-211ENST00000568291 PDIA3P30101 505 aaKnown RBP10.94□□□□□ -0.66
SF3B3-211ENST00000568291 MRPL12P52815 198 aaKnown RBP10.94□□□□□ -0.66
SF3B3-211ENST00000568291 CCL23P55773 120 aa10.94□□□□□ -0.66
SF3B3-211ENST00000568291 MRPS9P82933 396 aaKnown RBP10.94□□□□□ -0.66
SF3B3-211ENST00000568291 SP2Q02086 613 aa10.94□□□□□ -0.66
SF3B3-211ENST00000568291 TTLL4Q14679 1199 aa10.94□□□□□ -0.66
SF3B3-211ENST00000568291 TJAP1Q5JTD0 557 aa10.94□□□□□ -0.66
SF3B3-211ENST00000568291 VSIG10LQ86VR7 867 aa10.94□□□□□ -0.66
SF3B3-211ENST00000568291 PIP4P2Q8N4L2 257 aa10.94□□□□□ -0.66
SF3B3-211ENST00000568291 PPM1EQ8WY54 764 aa10.94□□□□□ -0.66
SF3B3-211ENST00000568291 SYMPKQ92797 1274 aaKnown RBP10.94□□□□□ -0.66
SF3B3-211ENST00000568291 UIMC1Q96RL1 719 aa10.94□□□□□ -0.66
SF3B3-211ENST00000568291 IWS1Q96ST2 819 aa10.94□□□□□ -0.66
SF3B3-211ENST00000568291 MPHOSPH6Q99547 160 aaKnown RBP10.94□□□□□ -0.66
SF3B3-211ENST00000568291 NOC4LQ9BVI4 516 aaKnown RBP10.94□□□□□ -0.66
SF3B3-211ENST00000568291 NKX2-4Q9H2Z4 354 aa10.94□□□□□ -0.66
SF3B3-211ENST00000568291 PRDM6Q9NQX0 595 aa10.94□□□□□ -0.66
SF3B3-211ENST00000568291 CXXC1Q9P0U4 656 aaPredicted RBP10.94□□□□□ -0.66
SF3B3-211ENST00000568291 MSRAQ9UJ68 235 aa10.94□□□□□ -0.66
SF3B3-211ENST00000568291 DDX41Q9UJV9 622 aaKnown RBP10.94□□□□□ -0.66
SF3B3-211ENST00000568291 CYP46A1Q9Y6A2 500 aa10.94□□□□□ -0.66
SF3B3-211ENST00000568291 MRVI1Q9Y6F6 885 aa10.94□□□□□ -0.66
SF3B3-211ENST00000568291 COL4A4P53420 1690 aaPredicted RBP10.94□□□□□ -0.66
SF3B3-211ENST00000568291 TET1Q8NFU7 2136 aa10.93□□□□□ -0.66
SF3B3-211ENST00000568291 FGBP02675 491 aa10.93□□□□□ -0.66
SF3B3-211ENST00000568291 NAPAP54920 295 aa10.93□□□□□ -0.66
SF3B3-211ENST00000568291 GHRHRQ02643 423 aa10.93□□□□□ -0.66
SF3B3-211ENST00000568291 ARHGAP1Q07960 439 aa10.93□□□□□ -0.66
SF3B3-211ENST00000568291 OTOP2Q7RTS6 562 aa10.93□□□□□ -0.66
SF3B3-211ENST00000568291 CUL5Q93034 780 aa10.93□□□□□ -0.66
SF3B3-211ENST00000568291 SEZ6LQ9BYH1 1024 aa10.93□□□□□ -0.66
SF3B3-211ENST00000568291 WNT8AQ9H1J5 351 aa10.93□□□□□ -0.66
SF3B3-211ENST00000568291 PDRG1Q9NUG6 133 aa10.93□□□□□ -0.66
SF3B3-211ENST00000568291 RBM28Q9NW13 759 aaKnown RBP10.93□□□□□ -0.66
SF3B3-211ENST00000568291 PKD2L1Q9P0L9 805 aa10.93□□□□□ -0.66
SF3B3-211ENST00000568291 Q9Y3F1 56 aa10.93□□□□□ -0.66
SF3B3-211ENST00000568291 TCF20Q9UGU0 1960 aaKnown RBP10.92□□□□□ -0.66
SF3B3-211ENST00000568291 PRRC2BQ5JSZ5 2229 aaKnown RBP10.92□□□□□ -0.66
SF3B3-211ENST00000568291 VCANP13611 3396 aa10.92□□□□□ -0.66
SF3B3-211ENST00000568291 LOC102724159A0A0B4J2E5 919 aa10.92□□□□□ -0.66
SF3B3-211ENST00000568291 SMCO2A6NFE2 343 aa10.92□□□□□ -0.66
SF3B3-211ENST00000568291 ZBBXA8MT70 800 aa10.92□□□□□ -0.66
SF3B3-211ENST00000568291 STXBP3O00186 592 aa10.92□□□□□ -0.66
SF3B3-211ENST00000568291 GH1P01241 217 aa10.92□□□□□ -0.66
SF3B3-211ENST00000568291 CCND2P30279 289 aa10.92□□□□□ -0.66
SF3B3-211ENST00000568291 PURAQ00577 322 aaKnown RBP10.92□□□□□ -0.66
SF3B3-211ENST00000568291 SP4Q02446 784 aa10.92□□□□□ -0.66
SF3B3-211ENST00000568291 TRAF1Q13077 416 aa10.92□□□□□ -0.66
SF3B3-211ENST00000568291 PWP2Q15269 919 aaKnown RBP10.92□□□□□ -0.66
SF3B3-211ENST00000568291 PKN1Q16512 942 aa10.92□□□□□ -0.66
SF3B3-211ENST00000568291 NBPF20Q3BBV1 942 aa10.92□□□□□ -0.66
SF3B3-211ENST00000568291 FAM47CQ5HY64 1035 aa10.92□□□□□ -0.66
SF3B3-211ENST00000568291 SCLYQ96I15 445 aa10.92□□□□□ -0.66
SF3B3-211ENST00000568291 SLC26A6Q9BXS9 759 aa10.92□□□□□ -0.66
SF3B3-211ENST00000568291 AGXT2Q9BYV1 514 aa10.92□□□□□ -0.66
SF3B3-211ENST00000568291 ALDH8A1Q9H2A2 487 aaPredicted RBP10.92□□□□□ -0.66
SF3B3-211ENST00000568291 TRMT13Q9NUP7 481 aaKnown RBP10.92□□□□□ -0.66
SF3B3-211ENST00000568291 POLR3EQ9NVU0 708 aa10.92□□□□□ -0.66
SF3B3-211ENST00000568291 THEGQ9P2T0 379 aa10.92□□□□□ -0.66
SF3B3-211ENST00000568291 PCDHA6Q9UN73 950 aa10.92□□□□□ -0.66
SF3B3-211ENST00000568291 YBX2Q9Y2T7 364 aaKnown RBP10.92□□□□□ -0.66
SF3B3-211ENST00000568291 PCDHA8Q9Y5H6 950 aa10.92□□□□□ -0.66
SF3B3-211ENST00000568291 SPTBN5Q9NRC6 3674 aaKnown RBP10.91□□□□□ -0.66
SF3B3-211ENST00000568291 A6NJR5 290 aa10.91□□□□□ -0.66
SF3B3-211ENST00000568291 GGPS1O95749 300 aa10.91□□□□□ -0.66
SF3B3-211ENST00000568291 ZNF286BP0CG31 522 aa10.91□□□□□ -0.66
SF3B3-211ENST00000568291 CYP2C9P11712 490 aa10.91□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms