RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, human

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLK3-222	ENST00000568232	TOP1MT	Q969P6	601 aa		13.91	□□□□□ -0.18
CLK3-222	ENST00000568232	INCENP	Q9NQS7	918 aa		13.91	□□□□□ -0.18
CLK3-222	ENST00000568232	SPTBN4	Q9H254	2564 aa		13.9	□□□□□ -0.18
CLK3-222	ENST00000568232		H0Y858	1186 aa		13.9	□□□□□ -0.18
CLK3-222	ENST00000568232		M0R2C6	588 aa		13.9	□□□□□ -0.18
CLK3-222	ENST00000568232	GRM6	O15303	877 aa		13.9	□□□□□ -0.18
CLK3-222	ENST00000568232	GPAA1	O43292	621 aa		13.9	□□□□□ -0.18
CLK3-222	ENST00000568232	NCK2	O43639	380 aa		13.9	□□□□□ -0.18
CLK3-222	ENST00000568232	GH1	P01241	217 aa		13.9	□□□□□ -0.18
CLK3-222	ENST00000568232	CAST	P20810	708 aa	Known RBP	13.9	□□□□□ -0.18
CLK3-222	ENST00000568232	PSEN2	P49810	448 aa		13.9	□□□□□ -0.18
CLK3-222	ENST00000568232	SMAD4	Q13485	552 aa	Known RBP	13.9	□□□□□ -0.18
CLK3-222	ENST00000568232	PKN1	Q16512	942 aa		13.9	□□□□□ -0.18
CLK3-222	ENST00000568232	SEPT14	Q6ZU15	432 aa		13.9	□□□□□ -0.18
CLK3-222	ENST00000568232	SIRT2	Q8IXJ6	389 aa		13.9	□□□□□ -0.18
CLK3-222	ENST00000568232	IFNL3	Q8IZI9	196 aa		13.9	□□□□□ -0.18
CLK3-222	ENST00000568232	TLR9	Q9NR96	1032 aa		13.9	□□□□□ -0.18
CLK3-222	ENST00000568232	CD207	Q9UJ71	328 aa		13.9	□□□□□ -0.18
CLK3-222	ENST00000568232	VPS13A	Q96RL7	3174 aa		13.89	□□□□□ -0.19
CLK3-222	ENST00000568232	ZDBF2	Q9HCK1	2354 aa		13.89	□□□□□ -0.19
CLK3-222	ENST00000568232	LOC101059915	A0A1B0GWI6	518 aa	Predicted RBP	13.89	□□□□□ -0.19
CLK3-222	ENST00000568232	RSPH10B2	B2RC85	870 aa		13.89	□□□□□ -0.19
CLK3-222	ENST00000568232	PATL2	C9JE40	543 aa	Known RBP	13.89	□□□□□ -0.19
CLK3-222	ENST00000568232	RSPH10B	P0C881	870 aa		13.89	□□□□□ -0.19
CLK3-222	ENST00000568232	ZNF286B	P0CG31	522 aa		13.89	□□□□□ -0.19
CLK3-222	ENST00000568232	CTNNB1	P35222	781 aa		13.89	□□□□□ -0.19
CLK3-222	ENST00000568232	MFSD10	Q14728	455 aa		13.89	□□□□□ -0.19
CLK3-222	ENST00000568232	KIAA0753	Q2KHM9	967 aa		13.89	□□□□□ -0.19
CLK3-222	ENST00000568232	PLEKHG4	Q58EX7	1191 aa		13.89	□□□□□ -0.19
CLK3-222	ENST00000568232	SYDE2	Q5VT97	1194 aa		13.89	□□□□□ -0.19
CLK3-222	ENST00000568232	ASCL5	Q7RTU5	278 aa		13.89	□□□□□ -0.19
CLK3-222	ENST00000568232	DNER	Q8NFT8	737 aa		13.89	□□□□□ -0.19
CLK3-222	ENST00000568232	APPBP2	Q92624	585 aa		13.89	□□□□□ -0.19
CLK3-222	ENST00000568232	MPHOSPH6	Q99547	160 aa	Known RBP	13.89	□□□□□ -0.19
CLK3-222	ENST00000568232	FRMPD2	Q68DX3	1309 aa	Predicted RBP	13.89	□□□□□ -0.19
CLK3-222	ENST00000568232	AVPR2	P30518	371 aa		13.88	□□□□□ -0.19
CLK3-222	ENST00000568232	THPO	P40225	353 aa		13.88	□□□□□ -0.19
CLK3-222	ENST00000568232	PPARA	Q07869	468 aa		13.88	□□□□□ -0.19
CLK3-222	ENST00000568232	DGKD	Q16760	1214 aa		13.88	□□□□□ -0.19
CLK3-222	ENST00000568232	BTNL9	Q6UXG8	535 aa		13.88	□□□□□ -0.19
CLK3-222	ENST00000568232	PANK1	Q8TE04	598 aa		13.88	□□□□□ -0.19
CLK3-222	ENST00000568232	GPCPD1	Q9NPB8	672 aa		13.88	□□□□□ -0.19
CLK3-222	ENST00000568232	MYH7	P12883	1935 aa		13.88	□□□□□ -0.19
CLK3-222	ENST00000568232	EMSY	Q7Z589	1322 aa		13.88	□□□□□ -0.19
CLK3-222	ENST00000568232	KMT2E	Q8IZD2	1858 aa		13.87	□□□□□ -0.19
CLK3-222	ENST00000568232	TSPY2	A6NKD2	308 aa		13.87	□□□□□ -0.19
CLK3-222	ENST00000568232	LOC730098	B7Z3J9	87 aa		13.87	□□□□□ -0.19
CLK3-222	ENST00000568232	HAS3	O00219	553 aa		13.87	□□□□□ -0.19
CLK3-222	ENST00000568232	RNF113A	O15541	343 aa	Known RBP	13.87	□□□□□ -0.19
CLK3-222	ENST00000568232	RAB11FIP3	O75154	756 aa		13.87	□□□□□ -0.19
CLK3-222	ENST00000568232	LINC00271	P0C7V0	271 aa		13.87	□□□□□ -0.19
CLK3-222	ENST00000568232	ADAM15	Q13444	863 aa		13.87	□□□□□ -0.19
CLK3-222	ENST00000568232	DHX37	Q8IY37	1157 aa	Known RBP	13.87	□□□□□ -0.19
CLK3-222	ENST00000568232	DCAF4	Q8WV16	495 aa		13.87	□□□□□ -0.19
CLK3-222	ENST00000568232	TBC1D5	Q92609	795 aa		13.87	□□□□□ -0.19
CLK3-222	ENST00000568232	MSLNL	Q96KJ4	702 aa		13.87	□□□□□ -0.19
CLK3-222	ENST00000568232	SEC62	Q99442	399 aa	Known RBP	13.87	□□□□□ -0.19
CLK3-222	ENST00000568232	IFIH1	Q9BYX4	1025 aa	Known RBP	13.87	□□□□□ -0.19
CLK3-222	ENST00000568232	BMP2K	Q9NSY1	1161 aa	Predicted RBP	13.87	□□□□□ -0.19
CLK3-222	ENST00000568232	ZBTB47	Q9UFB7	747 aa	Predicted RBP	13.87	□□□□□ -0.19
CLK3-222	ENST00000568232	COL4A6	Q14031	1691 aa		13.86	□□□□□ -0.19
CLK3-222	ENST00000568232	SMARCA5	O60264	1052 aa	Predicted RBP	13.86	□□□□□ -0.19
CLK3-222	ENST00000568232	F2	P00734	622 aa		13.86	□□□□□ -0.19
CLK3-222	ENST00000568232	GNAT2	P19087	354 aa		13.86	□□□□□ -0.19
CLK3-222	ENST00000568232	BMPR1A	P36894	532 aa		13.86	□□□□□ -0.19
CLK3-222	ENST00000568232	CTDSPL2	Q05D32	466 aa		13.86	□□□□□ -0.19
CLK3-222	ENST00000568232	FIBCD1	Q8N539	461 aa		13.86	□□□□□ -0.19
CLK3-222	ENST00000568232	KBTBD3	Q8NAB2	608 aa		13.86	□□□□□ -0.19
CLK3-222	ENST00000568232	ASIC4	Q96FT7	647 aa		13.86	□□□□□ -0.19
CLK3-222	ENST00000568232	TAAR1	Q96RJ0	339 aa		13.86	□□□□□ -0.19
CLK3-222	ENST00000568232	CLEC1B	Q9P126	229 aa		13.86	□□□□□ -0.19
CLK3-222	ENST00000568232	WDR87	Q6ZQQ6	2873 aa		13.85	□□□□□ -0.19
CLK3-222	ENST00000568232	MICAL3	Q7RTP6	2002 aa		13.85	□□□□□ -0.19
CLK3-222	ENST00000568232	MYO7A	Q13402	2215 aa		13.85	□□□□□ -0.19
CLK3-222	ENST00000568232		B4DLN1	442 aa		13.85	□□□□□ -0.19
CLK3-222	ENST00000568232	C5orf67	F2Z3F1	127 aa		13.85	□□□□□ -0.19
CLK3-222	ENST00000568232	SORBS3	O60504	671 aa		13.85	□□□□□ -0.19
CLK3-222	ENST00000568232	RGS20	O76081	388 aa		13.85	□□□□□ -0.19
CLK3-222	ENST00000568232	EYA4	O95677	639 aa		13.85	□□□□□ -0.19
CLK3-222	ENST00000568232	PDGFB	P01127	241 aa	Predicted RBP	13.85	□□□□□ -0.19
CLK3-222	ENST00000568232	SLC3A2	P08195	630 aa	Known RBP	13.85	□□□□□ -0.19
CLK3-222	ENST00000568232	NDUFV1	P49821	464 aa		13.85	□□□□□ -0.19
CLK3-222	ENST00000568232	MRPL12	P52815	198 aa	Known RBP	13.85	□□□□□ -0.19
CLK3-222	ENST00000568232	RRP1	P56182	461 aa	Known RBP	13.85	□□□□□ -0.19
CLK3-222	ENST00000568232	SIGLEC14	Q08ET2	396 aa		13.85	□□□□□ -0.19
CLK3-222	ENST00000568232	CAMK1	Q14012	370 aa		13.85	□□□□□ -0.19
CLK3-222	ENST00000568232	USH1G	Q495M9	461 aa		13.85	□□□□□ -0.19
CLK3-222	ENST00000568232	SERINC5	Q86VE9	423 aa		13.85	□□□□□ -0.19
CLK3-222	ENST00000568232	SEPT8	Q92599	483 aa		13.85	□□□□□ -0.19
CLK3-222	ENST00000568232	IL17RA	Q96F46	866 aa		13.85	□□□□□ -0.19
CLK3-222	ENST00000568232	FSD1	Q9BTV5	496 aa		13.85	□□□□□ -0.19
CLK3-222	ENST00000568232	C11orf84	Q9BUA3	381 aa	Predicted RBP	13.85	□□□□□ -0.19
CLK3-222	ENST00000568232	KATNAL1	Q9BW62	490 aa		13.85	□□□□□ -0.19
CLK3-222	ENST00000568232	LMAN2L	Q9H0V9	348 aa		13.85	□□□□□ -0.19
CLK3-222	ENST00000568232	DDX41	Q9UJV9	622 aa	Known RBP	13.85	□□□□□ -0.19
CLK3-222	ENST00000568232	DDX52	Q9Y2R4	599 aa	Known RBP eCLIP	13.85	□□□□□ -0.19
CLK3-222	ENST00000568232	ATG2A	Q2TAZ0	1938 aa		13.85	□□□□□ -0.19
CLK3-222	ENST00000568232	PROB1	E7EW31	1015 aa		13.84	□□□□□ -0.19
CLK3-222	ENST00000568232	RANBP6	O60518	1105 aa	Known RBP	13.84	□□□□□ -0.19
CLK3-222	ENST00000568232	RB1	P06400	928 aa		13.84	□□□□□ -0.19

Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms