RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 SLC10A6Q3KNW5 377 aa4.59□□□□□ -1.67
VPS35-207ENST00000568191 FAM26FQ5R3K3 315 aa4.59□□□□□ -1.67
VPS35-207ENST00000568191 PRAMEF18Q5VWM3 479 aa4.59□□□□□ -1.67
VPS35-207ENST00000568191 CCDC103Q8IW40 242 aa4.59□□□□□ -1.67
VPS35-207ENST00000568191 LGI4Q8N135 537 aa4.59□□□□□ -1.67
VPS35-207ENST00000568191 ST13P5Q8NFI4 369 aaPredicted RBP4.59□□□□□ -1.67
VPS35-207ENST00000568191 HNRNPLLQ8WVV9 542 aaKnown RBP4.59□□□□□ -1.67
VPS35-207ENST00000568191 ZNF428Q96B54 188 aa4.59□□□□□ -1.67
VPS35-207ENST00000568191 GMLQ99445 158 aa4.59□□□□□ -1.67
VPS35-207ENST00000568191 GORASP1Q9BQQ3 440 aa4.59□□□□□ -1.67
VPS35-207ENST00000568191 IER2Q9BTL4 223 aa4.59□□□□□ -1.67
VPS35-207ENST00000568191 SMOC1Q9H4F8 434 aa4.59□□□□□ -1.67
VPS35-207ENST00000568191 GPR27Q9NS67 375 aa4.59□□□□□ -1.67
VPS35-207ENST00000568191 NOBOXO60393 691 aa4.58□□□□□ -1.68
VPS35-207ENST00000568191 CYP1A1P04798 512 aaPredicted RBP4.58□□□□□ -1.68
VPS35-207ENST00000568191 THBS2P35442 1172 aa4.58□□□□□ -1.68
VPS35-207ENST00000568191 SPIRE1Q08AE8 756 aa4.58□□□□□ -1.68
VPS35-207ENST00000568191 RTP5Q14D33 572 aa4.58□□□□□ -1.68
VPS35-207ENST00000568191 SURF1Q15526 300 aa4.58□□□□□ -1.68
VPS35-207ENST00000568191 SF1Q15637 639 aaKnown RBP4.58□□□□□ -1.68
VPS35-207ENST00000568191 PRSS53Q2L4Q9 553 aa4.58□□□□□ -1.68
VPS35-207ENST00000568191 RGL3Q3MIN7 710 aa4.58□□□□□ -1.68
VPS35-207ENST00000568191 SLC35F1Q5T1Q4 408 aa4.58□□□□□ -1.68
VPS35-207ENST00000568191 MRM1Q6IN84 353 aaKnown RBP4.58□□□□□ -1.68
VPS35-207ENST00000568191 CYP4F22Q6NT55 531 aa4.58□□□□□ -1.68
VPS35-207ENST00000568191 USP53Q70EK8 1073 aa4.58□□□□□ -1.68
VPS35-207ENST00000568191 MICAL1Q8TDZ2 1067 aa4.58□□□□□ -1.68
VPS35-207ENST00000568191 ADAMTS17Q8TE56 1095 aa4.58□□□□□ -1.68
VPS35-207ENST00000568191 DCAF4Q8WV16 495 aa4.58□□□□□ -1.68
VPS35-207ENST00000568191 DDX1Q92499 740 aaKnown RBP4.58□□□□□ -1.68
VPS35-207ENST00000568191 TMEM209Q96SK2 561 aa4.58□□□□□ -1.68
VPS35-207ENST00000568191 ZFYVE21Q9BQ24 234 aa4.58□□□□□ -1.68
VPS35-207ENST00000568191 AARSD1Q9BTE6 412 aaKnown RBP4.58□□□□□ -1.68
VPS35-207ENST00000568191 LNPKQ9C0E8 428 aa4.58□□□□□ -1.68
VPS35-207ENST00000568191 L2HGDHQ9H9P8 463 aa4.58□□□□□ -1.68
VPS35-207ENST00000568191 SPATA6Q9NWH7 488 aaPredicted RBP4.58□□□□□ -1.68
VPS35-207ENST00000568191 DTLQ9NZJ0 730 aa4.58□□□□□ -1.68
VPS35-207ENST00000568191 TMEFF2Q9UIK5 374 aaPredicted RBP4.58□□□□□ -1.68
VPS35-207ENST00000568191 ZNF536O15090 1300 aa4.57□□□□□ -1.68
VPS35-207ENST00000568191 TRAV20A0A0B4J274 112 aa4.57□□□□□ -1.68
VPS35-207ENST00000568191 A0A1W2PQU0 124 aa4.57□□□□□ -1.68
VPS35-207ENST00000568191 MROH6A6NGR9 719 aa4.57□□□□□ -1.68
VPS35-207ENST00000568191 CNR2P34972 360 aa4.57□□□□□ -1.68
VPS35-207ENST00000568191 STAT5AP42229 794 aa4.57□□□□□ -1.68
VPS35-207ENST00000568191 ITGA1P56199 1179 aa4.57□□□□□ -1.68
VPS35-207ENST00000568191 ZC3H6P61129 1189 aaKnown RBP4.57□□□□□ -1.68
VPS35-207ENST00000568191 DLX2Q07687 328 aaPredicted RBP4.57□□□□□ -1.68
VPS35-207ENST00000568191 IFRD2Q12894 506 aaPredicted RBP4.57□□□□□ -1.68
VPS35-207ENST00000568191 ZNF827Q17R98 1081 aa4.57□□□□□ -1.68
VPS35-207ENST00000568191 KIZQ2M2Z5 673 aa4.57□□□□□ -1.68
VPS35-207ENST00000568191 SKOR2Q2VWA4 1001 aaPredicted RBP4.57□□□□□ -1.68
VPS35-207ENST00000568191 EMC4Q5J8M3 183 aa4.57□□□□□ -1.68
VPS35-207ENST00000568191 NSMFQ6X4W1 530 aa4.57□□□□□ -1.68
VPS35-207ENST00000568191 PLEKHH3Q7Z736 793 aa4.57□□□□□ -1.68
VPS35-207ENST00000568191 FERMT3Q86UX7 667 aa4.57□□□□□ -1.68
VPS35-207ENST00000568191 ZNF761Q86XN6 746 aaPredicted RBP4.57□□□□□ -1.68
VPS35-207ENST00000568191 FAM26EQ8N5C1 309 aa4.57□□□□□ -1.68
VPS35-207ENST00000568191 PPIL4Q8WUA2 492 aaKnown RBP eCLIP4.57□□□□□ -1.68
VPS35-207ENST00000568191 ZNF669Q96BR6 464 aaPredicted RBP4.57□□□□□ -1.68
VPS35-207ENST00000568191 LCORQ96JN0 433 aaPredicted RBP4.57□□□□□ -1.68
VPS35-207ENST00000568191 MYOTQ9UBF9 498 aa4.57□□□□□ -1.68
VPS35-207ENST00000568191 NPFFR2Q9Y5X5 522 aa4.57□□□□□ -1.68
VPS35-207ENST00000568191 TCRBV5S2A0A599 114 aa4.56□□□□□ -1.68
VPS35-207ENST00000568191 C9orf118A6NHY6 69 aa4.56□□□□□ -1.68
VPS35-207ENST00000568191 PRODHO43272 600 aa4.56□□□□□ -1.68
VPS35-207ENST00000568191 TADA3O75528 432 aa4.56□□□□□ -1.68
VPS35-207ENST00000568191 ADRB1P08588 477 aa4.56□□□□□ -1.68
VPS35-207ENST00000568191 FGFR1P11362 822 aa4.56□□□□□ -1.68
VPS35-207ENST00000568191 LCP1P13796 627 aa4.56□□□□□ -1.68
VPS35-207ENST00000568191 CYP4F3Q08477 520 aa4.56□□□□□ -1.68
VPS35-207ENST00000568191 RAB33AQ14088 237 aa4.56□□□□□ -1.68
VPS35-207ENST00000568191 MCTP2Q6DN12 878 aa4.56□□□□□ -1.68
VPS35-207ENST00000568191 EP400NLQ6ZTU2 488 aa4.56□□□□□ -1.68
VPS35-207ENST00000568191 NLRP10Q86W26 655 aa4.56□□□□□ -1.68
VPS35-207ENST00000568191 IFNL3Q8IZI9 196 aa4.56□□□□□ -1.68
VPS35-207ENST00000568191 GPR20Q99678 358 aa4.56□□□□□ -1.68
VPS35-207ENST00000568191 ALG1Q9BT22 464 aa4.56□□□□□ -1.68
VPS35-207ENST00000568191 PHF20Q9BVI0 1012 aa4.56□□□□□ -1.68
VPS35-207ENST00000568191 TMEM168Q9H0V1 697 aa4.56□□□□□ -1.68
VPS35-207ENST00000568191 SLC6A20Q9NP91 592 aa4.56□□□□□ -1.68
VPS35-207ENST00000568191 FTSJ1Q9UET6 329 aa4.56□□□□□ -1.68
VPS35-207ENST00000568191 DDX3XO00571 662 aaKnown RBP eCLIP4.55□□□□□ -1.684e-9■■■■■ 38.1
VPS35-207ENST00000568191 KLF4O43474 513 aa4.55□□□□□ -1.68
VPS35-207ENST00000568191 PRICKLE3O43900 615 aaPredicted RBP4.55□□□□□ -1.68
VPS35-207ENST00000568191 DLX3O60479 287 aa4.55□□□□□ -1.68
VPS35-207ENST00000568191 GNAT1P11488 350 aa4.55□□□□□ -1.68
VPS35-207ENST00000568191 PABPC1P11940 636 aaKnown RBP4.55□□□□□ -1.68
VPS35-207ENST00000568191 NAT1P18440 290 aa4.55□□□□□ -1.68
VPS35-207ENST00000568191 ATP2B1P20020 1258 aa4.55□□□□□ -1.68
VPS35-207ENST00000568191 CR1LQ2VPA4 569 aa4.55□□□□□ -1.68
VPS35-207ENST00000568191 TEPPQ6URK8 271 aa4.55□□□□□ -1.68
VPS35-207ENST00000568191 GLB1LQ6UWU2 654 aa4.55□□□□□ -1.68
VPS35-207ENST00000568191 STK32CQ86UX6 486 aa4.55□□□□□ -1.68
VPS35-207ENST00000568191 CELF2-AS1Q8N7Q2 184 aa4.55□□□□□ -1.68
VPS35-207ENST00000568191 TXNDC5Q8NBS9 432 aaKnown RBP4.55□□□□□ -1.68
VPS35-207ENST00000568191 CDC6Q99741 560 aa4.55□□□□□ -1.68
VPS35-207ENST00000568191 CROTQ9UKG9 612 aa4.55□□□□□ -1.68
VPS35-207ENST00000568191 FAM47E-STBD1D6RA91 191 aa4.54□□□□□ -1.68
VPS35-207ENST00000568191 FBXO21O94952 628 aa4.54□□□□□ -1.68
VPS35-207ENST00000568191 IL13P35225 146 aa4.54□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms