RNA–Protein interactions for RNA: ENST00000567250.5

SF3B3-208, Transcript of splicing factor 3b subunit 3, human

TSL 3

Gene SF3B3, Length 1,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SF3B3-208	ENST00000567250	FBXO18	Q8NFZ0	1043 aa		13.86	□□□□□ -0.19
SF3B3-208	ENST00000567250	UPF3A	Q9H1J1	476 aa	Known RBP	13.86	□□□□□ -0.19
SF3B3-208	ENST00000567250	GJB4	Q9NTQ9	266 aa		13.86	□□□□□ -0.19
SF3B3-208	ENST00000567250	GNE	Q9Y223	722 aa	Known RBP	13.86	□□□□□ -0.19
SF3B3-208	ENST00000567250	UBIAD1	Q9Y5Z9	338 aa		13.86	□□□□□ -0.19
SF3B3-208	ENST00000567250		H3BQV1	296 aa		13.85	□□□□□ -0.19
SF3B3-208	ENST00000567250	ADCY6	O43306	1168 aa		13.85	□□□□□ -0.19
SF3B3-208	ENST00000567250	ZEB2	O60315	1214 aa		13.85	□□□□□ -0.19
SF3B3-208	ENST00000567250	FARP2	O94887	1054 aa	Predicted RBP	13.85	□□□□□ -0.19
SF3B3-208	ENST00000567250	UBA1	P22314	1058 aa	Known RBP	13.85	□□□□□ -0.19
SF3B3-208	ENST00000567250	CST5	P28325	142 aa	Predicted RBP	13.85	□□□□□ -0.19
SF3B3-208	ENST00000567250	USP11	P51784	963 aa		13.85	□□□□□ -0.19
SF3B3-208	ENST00000567250	BECN1	Q14457	450 aa		13.85	□□□□□ -0.19
SF3B3-208	ENST00000567250	NEDD9	Q14511	834 aa		13.85	□□□□□ -0.19
SF3B3-208	ENST00000567250	CEP55	Q53EZ4	464 aa		13.85	□□□□□ -0.19
SF3B3-208	ENST00000567250	IFFO2	Q5TF58	517 aa		13.85	□□□□□ -0.19
SF3B3-208	ENST00000567250	CCDC62	Q6P9F0	684 aa		13.85	□□□□□ -0.19
SF3B3-208	ENST00000567250	MOXD1	Q6UVY6	613 aa		13.85	□□□□□ -0.19
SF3B3-208	ENST00000567250	NEK8	Q86SG6	692 aa		13.85	□□□□□ -0.19
SF3B3-208	ENST00000567250	OR6J1	Q8NGC5	347 aa		13.85	□□□□□ -0.19
SF3B3-208	ENST00000567250	TBCK	Q8TEA7	893 aa		13.85	□□□□□ -0.19
SF3B3-208	ENST00000567250	CRYGN	Q8WXF5	182 aa		13.85	□□□□□ -0.19
SF3B3-208	ENST00000567250	LENG1	Q96BZ8	264 aa	Predicted RBP	13.85	□□□□□ -0.19
SF3B3-208	ENST00000567250	MXRA8	Q9BRK3	442 aa		13.85	□□□□□ -0.19
SF3B3-208	ENST00000567250	JADE2	Q9NQC1	790 aa		13.85	□□□□□ -0.19
SF3B3-208	ENST00000567250	RTEL1	Q9NZ71	1219 aa		13.85	□□□□□ -0.19
SF3B3-208	ENST00000567250	MOXD2P	A6NHM9	499 aa		13.84	□□□□□ -0.19
SF3B3-208	ENST00000567250	ADAMTS4	O75173	837 aa		13.84	□□□□□ -0.19
SF3B3-208	ENST00000567250	RGS20	O76081	388 aa		13.84	□□□□□ -0.19
SF3B3-208	ENST00000567250	ARIH2	O95376	493 aa		13.84	□□□□□ -0.19
SF3B3-208	ENST00000567250	PGK1	P00558	417 aa		13.84	□□□□□ -0.19
SF3B3-208	ENST00000567250	GCFC2	P16383	781 aa	Known RBP	13.84	□□□□□ -0.19
SF3B3-208	ENST00000567250	ITGB5	P18084	799 aa		13.84	□□□□□ -0.19
SF3B3-208	ENST00000567250	CIITA	P33076	1130 aa		13.84	□□□□□ -0.19
SF3B3-208	ENST00000567250	NKX3-2	P78367	333 aa		13.84	□□□□□ -0.19
SF3B3-208	ENST00000567250	GUCY1B3	Q02153	619 aa		13.84	□□□□□ -0.19
SF3B3-208	ENST00000567250	LRRC41	Q15345	812 aa		13.84	□□□□□ -0.19
SF3B3-208	ENST00000567250	PIK3AP1	Q6ZUJ8	805 aa		13.84	□□□□□ -0.19
SF3B3-208	ENST00000567250	DHX37	Q8IY37	1157 aa	Known RBP	13.84	□□□□□ -0.19
SF3B3-208	ENST00000567250	EMID1	Q96A84	441 aa	Predicted RBP	13.84	□□□□□ -0.19
SF3B3-208	ENST00000567250	SENP7	Q9BQF6	1050 aa		13.84	□□□□□ -0.19
SF3B3-208	ENST00000567250	TSEN34	Q9BSV6	310 aa	Known RBP	13.84	□□□□□ -0.19
SF3B3-208	ENST00000567250	FOXP1	Q9H334	677 aa	Predicted RBP	13.84	□□□□□ -0.19
SF3B3-208	ENST00000567250	TCEAL9	Q9UHQ7	104 aa		13.84	□□□□□ -0.19
SF3B3-208	ENST00000567250	DDX41	Q9UJV9	622 aa	Known RBP	13.84	□□□□□ -0.19
SF3B3-208	ENST00000567250	BTBD18	B2RXH4	712 aa		13.83	□□□□□ -0.2
SF3B3-208	ENST00000567250	SPATA31C2	B4DYI2	1134 aa		13.83	□□□□□ -0.2
SF3B3-208	ENST00000567250	ADAMTS3	O15072	1205 aa		13.83	□□□□□ -0.2
SF3B3-208	ENST00000567250	DYNC1LI2	O43237	492 aa	Predicted RBP	13.83	□□□□□ -0.2
SF3B3-208	ENST00000567250	GGPS1	O95749	300 aa		13.83	□□□□□ -0.2
SF3B3-208	ENST00000567250	EN2	P19622	333 aa	Predicted RBP	13.83	□□□□□ -0.2
SF3B3-208	ENST00000567250	NR5A1	Q13285	461 aa		13.83	□□□□□ -0.2
SF3B3-208	ENST00000567250	LAMC2	Q13753	1193 aa		13.83	□□□□□ -0.2
SF3B3-208	ENST00000567250	FSCN1	Q16658	493 aa	Known RBP	13.83	□□□□□ -0.2
SF3B3-208	ENST00000567250	LY6K	Q17RY6	165 aa		13.83	□□□□□ -0.2
SF3B3-208	ENST00000567250	INF2	Q27J81	1249 aa		13.83	□□□□□ -0.2
SF3B3-208	ENST00000567250	LARP1B	Q659C4	914 aa	Known RBP	13.83	□□□□□ -0.2
SF3B3-208	ENST00000567250	NECAB2	Q7Z6G3	386 aa		13.83	□□□□□ -0.2
SF3B3-208	ENST00000567250	PLA2G4D	Q86XP0	818 aa		13.83	□□□□□ -0.2
SF3B3-208	ENST00000567250	OXER1	Q8TDS5	423 aa		13.83	□□□□□ -0.2
SF3B3-208	ENST00000567250	MLXIP	Q9HAP2	919 aa		13.83	□□□□□ -0.2
SF3B3-208	ENST00000567250	POLR3E	Q9NVU0	708 aa		13.83	□□□□□ -0.2
SF3B3-208	ENST00000567250	MYH15	Q9Y2K3	1946 aa		13.83	□□□□□ -0.2
SF3B3-208	ENST00000567250	SPDYE4	A6NLX3	237 aa		13.82	□□□□□ -0.2
SF3B3-208	ENST00000567250	MEIS1	O00470	390 aa		13.82	□□□□□ -0.2
SF3B3-208	ENST00000567250	NOP56	O00567	594 aa	Known RBP	13.82	□□□□□ -0.2
SF3B3-208	ENST00000567250	CABYR	O75952	493 aa		13.82	□□□□□ -0.2
SF3B3-208	ENST00000567250	PDIA4	P13667	645 aa	Known RBP	13.82	□□□□□ -0.2
SF3B3-208	ENST00000567250	ARHGAP1	Q07960	439 aa		13.82	□□□□□ -0.2
SF3B3-208	ENST00000567250	GNAS	Q5JWF2	1037 aa		13.82	□□□□□ -0.2
SF3B3-208	ENST00000567250	GJC2	Q5T442	439 aa	Predicted RBP	13.82	□□□□□ -0.2
SF3B3-208	ENST00000567250	METTL7B	Q6UX53	244 aa		13.82	□□□□□ -0.2
SF3B3-208	ENST00000567250	TNFRSF25	Q93038	417 aa		13.82	□□□□□ -0.2
SF3B3-208	ENST00000567250	ZFP91	Q96JP5	570 aa	Predicted RBP	13.82	□□□□□ -0.2
SF3B3-208	ENST00000567250	SDF4	Q9BRK5	362 aa		13.82	□□□□□ -0.2
SF3B3-208	ENST00000567250	C11orf49	Q9H6J7	331 aa		13.82	□□□□□ -0.2
SF3B3-208	ENST00000567250	KCNH7	Q9NS40	1196 aa		13.82	□□□□□ -0.2
SF3B3-208	ENST00000567250	NOL7	Q9UMY1	257 aa	Known RBP	13.82	□□□□□ -0.2
SF3B3-208	ENST00000567250	IGLV3-22	A0A075B6J6	115 aa		13.81	□□□□□ -0.2
SF3B3-208	ENST00000567250	FAM86B1	E9PN63	330 aa		13.81	□□□□□ -0.2
SF3B3-208	ENST00000567250	KPNA6	O60684	536 aa		13.81	□□□□□ -0.2
SF3B3-208	ENST00000567250	FAM86B2	P0C5J1	330 aa		13.81	□□□□□ -0.2
SF3B3-208	ENST00000567250	SEMA3F	Q13275	785 aa		13.81	□□□□□ -0.2
SF3B3-208	ENST00000567250	ORC2	Q13416	577 aa	Predicted RBP	13.81	□□□□□ -0.2
SF3B3-208	ENST00000567250	LETM2	Q2VYF4	491 aa		13.81	□□□□□ -0.2
SF3B3-208	ENST00000567250	PRR16	Q569H4	304 aa		13.81	□□□□□ -0.2
SF3B3-208	ENST00000567250	CELF3	Q5SZQ8	465 aa	Known RBP	13.81	□□□□□ -0.2
SF3B3-208	ENST00000567250	MCTP1	Q6DN14	999 aa		13.81	□□□□□ -0.2
SF3B3-208	ENST00000567250	PPP4R3A	Q6IN85	833 aa		13.81	□□□□□ -0.2
SF3B3-208	ENST00000567250	NOSTRIN	Q8IVI9	506 aa		13.81	□□□□□ -0.2
SF3B3-208	ENST00000567250	KLHDC9	Q8NEP7	349 aa		13.81	□□□□□ -0.2
SF3B3-208	ENST00000567250	PPTC7	Q8NI37	304 aa		13.81	□□□□□ -0.2
SF3B3-208	ENST00000567250	COPS5	Q92905	334 aa		13.81	□□□□□ -0.2
SF3B3-208	ENST00000567250	GLT1D1	Q96MS3	346 aa		13.81	□□□□□ -0.2
SF3B3-208	ENST00000567250	SPATA33	Q96N06	139 aa		13.81	□□□□□ -0.2
SF3B3-208	ENST00000567250	ZNF577	Q9BSK1	485 aa		13.81	□□□□□ -0.2
SF3B3-208	ENST00000567250	JPH1	Q9HDC5	661 aa	Predicted RBP	13.81	□□□□□ -0.2
SF3B3-208	ENST00000567250	PHF24	Q9UPV7	400 aa		13.81	□□□□□ -0.2
SF3B3-208	ENST00000567250	NFASC	O94856	1347 aa		13.81	□□□□□ -0.2
SF3B3-208	ENST00000567250	VPS37C	A5D8V6	355 aa	Predicted RBP	13.8	□□□□□ -0.2

Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms