RNA–Protein interactions for RNA: ENST00000565236.1

CLN3-215, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 582 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-215ENST00000565236 SGMS1Q86VZ5 419 aa25.91■■□□□ 1.74
CLN3-215ENST00000565236 CCDC82Q8N4S0 544 aa25.91■■□□□ 1.74
CLN3-215ENST00000565236 ALG1Q9BT22 464 aa25.91■■□□□ 1.74
CLN3-215ENST00000565236 SLC4A7Q9Y6M7 1214 aa25.91■■□□□ 1.74
CLN3-215ENST00000565236 ZBBXA8MT70 800 aa25.9■■□□□ 1.74
CLN3-215ENST00000565236 IQCF3P0C7M6 154 aa25.9■■□□□ 1.74
CLN3-215ENST00000565236 ZNF286BP0CG31 522 aa25.9■■□□□ 1.74
CLN3-215ENST00000565236 UBA1P22314 1058 aaKnown RBP25.9■■□□□ 1.74
CLN3-215ENST00000565236 MRPS9P82933 396 aaKnown RBP25.9■■□□□ 1.74
CLN3-215ENST00000565236 MFSD10Q14728 455 aa25.9■■□□□ 1.74
CLN3-215ENST00000565236 GRIN2CQ14957 1233 aa25.9■■□□□ 1.74
CLN3-215ENST00000565236 RAB30Q15771 203 aa25.9■■□□□ 1.74
CLN3-215ENST00000565236 HSDL1Q3SXM5 330 aa25.9■■□□□ 1.74
CLN3-215ENST00000565236 CCDC155Q8N6L0 562 aa25.9■■□□□ 1.74
CLN3-215ENST00000565236 GPKOWQ92917 476 aaPredicted RBP eCLIP25.9■■□□□ 1.74
CLN3-215ENST00000565236 VWCEQ96DN2 955 aa25.9■■□□□ 1.74
CLN3-215ENST00000565236 FRMPD4Q14CM0 1322 aa25.89■■□□□ 1.74
CLN3-215ENST00000565236 PIK3CDO00329 1044 aa25.89■■□□□ 1.74
CLN3-215ENST00000565236 F2P00734 622 aa25.89■■□□□ 1.74
CLN3-215ENST00000565236 FOSL2P15408 326 aa25.89■■□□□ 1.74
CLN3-215ENST00000565236 KIAA0753Q2KHM9 967 aa25.89■■□□□ 1.74
CLN3-215ENST00000565236 MICU3Q86XE3 530 aa25.89■■□□□ 1.74
CLN3-215ENST00000565236 PSTPIP2Q9H939 334 aa25.89■■□□□ 1.74
CLN3-215ENST00000565236 RTEL1Q9NZ71 1219 aa25.89■■□□□ 1.74
CLN3-215ENST00000565236 HDAC6Q9UBN7 1215 aa25.89■■□□□ 1.74
CLN3-215ENST00000565236 GTF2IRD1Q9UHL9 959 aa25.89■■□□□ 1.74
CLN3-215ENST00000565236 MEIS2O14770 477 aa25.88■■□□□ 1.73
CLN3-215ENST00000565236 ACTN1P12814 892 aa25.88■■□□□ 1.73
CLN3-215ENST00000565236 HOXD8P13378 290 aaPredicted RBP25.88■■□□□ 1.73
CLN3-215ENST00000565236 TSGA10IPQ3SY00 556 aa25.88■■□□□ 1.73
CLN3-215ENST00000565236 DHX32Q7L7V1 743 aaKnown RBP25.88■■□□□ 1.73
CLN3-215ENST00000565236 MAFAQ8NHW3 353 aaPredicted RBP25.88■■□□□ 1.73
CLN3-215ENST00000565236 CAGE1Q8TC20 777 aa25.88■■□□□ 1.73
CLN3-215ENST00000565236 INPP4AQ96PE3 977 aaPredicted RBP25.88■■□□□ 1.73
CLN3-215ENST00000565236 FTOQ9C0B1 505 aaKnown RBP eCLIP25.88■■□□□ 1.73
CLN3-215ENST00000565236 CDH23Q9H251 3354 aa25.87■■□□□ 1.73
CLN3-215ENST00000565236 hCG_1642624A0A1W2PR95 340 aa25.87■■□□□ 1.73
CLN3-215ENST00000565236 SPATA31C2B4DYI2 1134 aa25.87■■□□□ 1.73
CLN3-215ENST00000565236 HAS3O00219 553 aa25.87■■□□□ 1.73
CLN3-215ENST00000565236 ICAM3P32942 547 aa25.87■■□□□ 1.73
CLN3-215ENST00000565236 EXOSC10Q01780 885 aaKnown RBP25.87■■□□□ 1.73
CLN3-215ENST00000565236 KRT32Q14532 448 aa25.87■■□□□ 1.73
CLN3-215ENST00000565236 XRRA1Q6P2D8 792 aa25.87■■□□□ 1.73
CLN3-215ENST00000565236 TMTC3Q6ZXV5 915 aa25.87■■□□□ 1.73
CLN3-215ENST00000565236 RASEFQ8IZ41 740 aa25.87■■□□□ 1.73
CLN3-215ENST00000565236 TRIP12Q14669 1992 aaPredicted RBP25.87■■□□□ 1.73
CLN3-215ENST00000565236 SCN5AQ14524 2016 aa25.87■■□□□ 1.73
CLN3-215ENST00000565236 FIBPO43427 364 aa25.86■■□□□ 1.73
CLN3-215ENST00000565236 NEDD9Q14511 834 aa25.86■■□□□ 1.73
CLN3-215ENST00000565236 PCNX4Q63HM2 1172 aa25.86■■□□□ 1.73
CLN3-215ENST00000565236 APOA5Q6Q788 366 aa25.86■■□□□ 1.73
CLN3-215ENST00000565236 AFAP1L1Q8TED9 768 aa25.86■■□□□ 1.73
CLN3-215ENST00000565236 TCEANC2Q96MN5 208 aa25.86■■□□□ 1.73
CLN3-215ENST00000565236 CTAGE1Q96RT6 745 aa25.86■■□□□ 1.73
CLN3-215ENST00000565236 MYO9BQ13459 2157 aa25.85■■□□□ 1.73
CLN3-215ENST00000565236 NOP56O00567 594 aaKnown RBP25.85■■□□□ 1.73
CLN3-215ENST00000565236 ATP2A2P16615 1042 aaKnown RBP25.85■■□□□ 1.73
CLN3-215ENST00000565236 ADCK5Q3MIX3 580 aa25.85■■□□□ 1.73
CLN3-215ENST00000565236 BCAS3Q9H6U6 928 aa25.85■■□□□ 1.73
CLN3-215ENST00000565236 SLC28A3Q9HAS3 691 aa25.85■■□□□ 1.73
CLN3-215ENST00000565236 RBM28Q9NW13 759 aaKnown RBP25.85■■□□□ 1.73
CLN3-215ENST00000565236 SELPP16109 830 aa25.84■■□□□ 1.73
CLN3-215ENST00000565236 CYFIP1Q7L576 1253 aa25.84■■□□□ 1.73
CLN3-215ENST00000565236 HEATR3Q7Z4Q2 680 aa25.84■■□□□ 1.73
CLN3-215ENST00000565236 C16orf70Q9BSU1 422 aa25.84■■□□□ 1.73
CLN3-215ENST00000565236 NKX2-4Q9H2Z4 354 aa25.84■■□□□ 1.73
CLN3-215ENST00000565236 DLL1O00548 723 aa25.83■■□□□ 1.73
CLN3-215ENST00000565236 ZBTB43O43298 467 aa25.83■■□□□ 1.73
CLN3-215ENST00000565236 HMGB1P09429 215 aaKnown RBP25.83■■□□□ 1.73
CLN3-215ENST00000565236 RABGGTBP53611 331 aa25.83■■□□□ 1.73
CLN3-215ENST00000565236 PTK7Q13308 1070 aa25.83■■□□□ 1.73
CLN3-215ENST00000565236 METTL7BQ6UX53 244 aa25.83■■□□□ 1.73
CLN3-215ENST00000565236 NLRX1Q86UT6 975 aa25.83■■□□□ 1.73
CLN3-215ENST00000565236 DHX38Q92620 1227 aaKnown RBP25.83■■□□□ 1.73
CLN3-215ENST00000565236 BRPF3Q9ULD4 1205 aa25.83■■□□□ 1.73
CLN3-215ENST00000565236 EYSQ5T1H1 3165 aa25.82■■□□□ 1.72
CLN3-215ENST00000565236 H3BRB1 525 aa25.82■■□□□ 1.72
CLN3-215ENST00000565236 PARNO95453 639 aaKnown RBP25.82■■□□□ 1.72
CLN3-215ENST00000565236 SEMA3FQ13275 785 aa25.82■■□□□ 1.72
CLN3-215ENST00000565236 RTN1Q16799 776 aa25.82■■□□□ 1.72
CLN3-215ENST00000565236 LRRC8DQ7L1W4 858 aa25.82■■□□□ 1.72
CLN3-215ENST00000565236 PHF6Q8IWS0 365 aaKnown RBP eCLIP25.82■■□□□ 1.72
CLN3-215ENST00000565236 SENP7Q9BQF6 1050 aa25.82■■□□□ 1.72
CLN3-215ENST00000565236 USP26Q9BXU7 913 aa25.82■■□□□ 1.72
CLN3-215ENST00000565236 TUT1Q9H6E5 874 aaKnown RBP25.82■■□□□ 1.72
CLN3-215ENST00000565236 YBX2Q9Y2T7 364 aaKnown RBP25.82■■□□□ 1.72
CLN3-215ENST00000565236 PCDHA11Q9Y5I1 949 aa25.82■■□□□ 1.72
CLN3-215ENST00000565236 UNC80Q8N2C7 3258 aa25.82■■□□□ 1.72
CLN3-215ENST00000565236 CHD9Q3L8U1 2897 aa25.81■■□□□ 1.72
CLN3-215ENST00000565236 SPDYE3A6NKU9 549 aa25.81■■□□□ 1.72
CLN3-215ENST00000565236 LGALS2P05162 132 aa25.81■■□□□ 1.72
CLN3-215ENST00000565236 CKBP12277 381 aa25.81■■□□□ 1.72
CLN3-215ENST00000565236 FGD1P98174 961 aa25.81■■□□□ 1.72
CLN3-215ENST00000565236 ZNF200P98182 395 aaPredicted RBP25.81■■□□□ 1.72
CLN3-215ENST00000565236 RBL2Q08999 1139 aa25.81■■□□□ 1.72
CLN3-215ENST00000565236 UBE2SQ16763 222 aa25.81■■□□□ 1.72
CLN3-215ENST00000565236 GAS2L1Q99501 681 aaPredicted RBP25.81■■□□□ 1.72
CLN3-215ENST00000565236 PRDM12Q9H4Q4 367 aa25.81■■□□□ 1.72
CLN3-215ENST00000565236 KLF18A0A0U1RQI7 1052 aa25.8■■□□□ 1.72
CLN3-215ENST00000565236 GIMAP8Q8ND71 665 aaPredicted RBP25.8■■□□□ 1.72
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms