RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 PITPNM1O00562 1244 aa17.15■□□□□ 0.34
CLN3-213ENST00000565047 STAM2O75886 525 aa17.15■□□□□ 0.34
CLN3-213ENST00000565047 GGPS1O95749 300 aa17.15■□□□□ 0.34
CLN3-213ENST00000565047 FGBP02675 491 aa17.15■□□□□ 0.34
CLN3-213ENST00000565047 IQCF3P0C7M6 154 aa17.15■□□□□ 0.34
CLN3-213ENST00000565047 RBL2Q08999 1139 aa17.15■□□□□ 0.34
CLN3-213ENST00000565047 KRT32Q14532 448 aa17.15■□□□□ 0.34
CLN3-213ENST00000565047 PCNX4Q63HM2 1172 aa17.15■□□□□ 0.34
CLN3-213ENST00000565047 TYW1BQ6NUM6 668 aa17.15■□□□□ 0.34
CLN3-213ENST00000565047 MICU3Q86XE3 530 aa17.15■□□□□ 0.34
CLN3-213ENST00000565047 CCDC82Q8N4S0 544 aa17.15■□□□□ 0.34
CLN3-213ENST00000565047 CDX2Q99626 313 aaPredicted RBP17.15■□□□□ 0.34
CLN3-213ENST00000565047 SEC63Q9UGP8 760 aaKnown RBP17.15■□□□□ 0.34
CLN3-213ENST00000565047 GTF2IRD1Q9UHL9 959 aa17.15■□□□□ 0.34
CLN3-213ENST00000565047 TELO2Q9Y4R8 837 aa17.15■□□□□ 0.34
CLN3-213ENST00000565047 CHD9Q3L8U1 2897 aa17.15■□□□□ 0.34
CLN3-213ENST00000565047 UNC80Q8N2C7 3258 aa17.15■□□□□ 0.34
CLN3-213ENST00000565047 CNTNAP5Q8WYK1 1306 aa17.15■□□□□ 0.34
CLN3-213ENST00000565047 DNAJB2P25686 324 aa17.14■□□□□ 0.33
CLN3-213ENST00000565047 PBX2P40425 430 aa17.14■□□□□ 0.33
CLN3-213ENST00000565047 PSEN2P49810 448 aa17.14■□□□□ 0.33
CLN3-213ENST00000565047 FAM47CQ5HY64 1035 aa17.14■□□□□ 0.33
CLN3-213ENST00000565047 XRRA1Q6P2D8 792 aa17.14■□□□□ 0.33
CLN3-213ENST00000565047 FBXL16Q8N461 479 aa17.14■□□□□ 0.33
CLN3-213ENST00000565047 SPATA33Q96N06 139 aa17.14■□□□□ 0.33
CLN3-213ENST00000565047 PBX4Q9BYU1 374 aa17.14■□□□□ 0.33
CLN3-213ENST00000565047 PSTPIP2Q9H939 334 aa17.14■□□□□ 0.33
CLN3-213ENST00000565047 RTEL1Q9NZ71 1219 aa17.14■□□□□ 0.33
CLN3-213ENST00000565047 HDAC6Q9UBN7 1215 aa17.14■□□□□ 0.33
CLN3-213ENST00000565047 SNX14Q9Y5W7 946 aa17.14■□□□□ 0.33
CLN3-213ENST00000565047 MYH7BA7E2Y1 1941 aa17.13■□□□□ 0.33
CLN3-213ENST00000565047 ZNF286BP0CG31 522 aa17.13■□□□□ 0.33
CLN3-213ENST00000565047 CPA1P15085 419 aa17.13■□□□□ 0.33
CLN3-213ENST00000565047 CDC27P30260 824 aa17.13■□□□□ 0.33
CLN3-213ENST00000565047 HOXC8P31273 242 aa17.13■□□□□ 0.33
CLN3-213ENST00000565047 RCAN1P53805 252 aa17.13■□□□□ 0.33
CLN3-213ENST00000565047 PTGISQ16647 500 aa17.13■□□□□ 0.33
CLN3-213ENST00000565047 TRAF7Q6Q0C0 670 aa17.13■□□□□ 0.33
CLN3-213ENST00000565047 OTOP2Q7RTS6 562 aa17.13■□□□□ 0.33
CLN3-213ENST00000565047 RPUSD2Q8IZ73 545 aaKnown RBP17.13■□□□□ 0.33
CLN3-213ENST00000565047 SMARCC2Q8TAQ2 1214 aa17.13■□□□□ 0.33
CLN3-213ENST00000565047 AGXT2Q9BYV1 514 aa17.13■□□□□ 0.33
CLN3-213ENST00000565047 RBM28Q9NW13 759 aaKnown RBP17.13■□□□□ 0.33
CLN3-213ENST00000565047 A0A0C4DFX4 3053 aa17.12■□□□□ 0.33
CLN3-213ENST00000565047 ZBTB43O43298 467 aa17.12■□□□□ 0.33
CLN3-213ENST00000565047 FIBPO43427 364 aa17.12■□□□□ 0.33
CLN3-213ENST00000565047 SORBS3O60504 671 aa17.12■□□□□ 0.33
CLN3-213ENST00000565047 PFKMP08237 780 aa17.12■□□□□ 0.33
CLN3-213ENST00000565047 HMGB1P09429 215 aaKnown RBP17.12■□□□□ 0.33
CLN3-213ENST00000565047 ITGB5P18084 799 aa17.12■□□□□ 0.33
CLN3-213ENST00000565047 MFSD10Q14728 455 aa17.12■□□□□ 0.33
CLN3-213ENST00000565047 KIAA0753Q2KHM9 967 aa17.12■□□□□ 0.33
CLN3-213ENST00000565047 TRIM71Q2Q1W2 868 aaKnown RBP17.12■□□□□ 0.33
CLN3-213ENST00000565047 WWC2Q6AWC2 1192 aa17.12■□□□□ 0.33
CLN3-213ENST00000565047 WNT8BQ93098 351 aa17.12■□□□□ 0.33
CLN3-213ENST00000565047 SENP7Q9BQF6 1050 aa17.12■□□□□ 0.33
CLN3-213ENST00000565047 KATNAL1Q9BW62 490 aa17.12■□□□□ 0.33
CLN3-213ENST00000565047 SCN5AQ14524 2016 aa17.12■□□□□ 0.33
CLN3-213ENST00000565047 RFC2P35250 354 aa17.11■□□□□ 0.33
CLN3-213ENST00000565047 ZNF200P98182 395 aaPredicted RBP17.11■□□□□ 0.33
CLN3-213ENST00000565047 GRIN2CQ14957 1233 aa17.11■□□□□ 0.33
CLN3-213ENST00000565047 UBE2SQ16763 222 aa17.11■□□□□ 0.33
CLN3-213ENST00000565047 RTN1Q16799 776 aa17.11■□□□□ 0.33
CLN3-213ENST00000565047 GNPTABQ3T906 1256 aa17.11■□□□□ 0.33
CLN3-213ENST00000565047 METTL7BQ6UX53 244 aa17.11■□□□□ 0.33
CLN3-213ENST00000565047 SYNE3Q6ZMZ3 975 aa17.11■□□□□ 0.33
CLN3-213ENST00000565047 CAGE1Q8TC20 777 aa17.11■□□□□ 0.33
CLN3-213ENST00000565047 CUL5Q93034 780 aa17.11■□□□□ 0.33
CLN3-213ENST00000565047 TIFAQ96CG3 184 aa17.11■□□□□ 0.33
CLN3-213ENST00000565047 GPR20Q99678 358 aa17.11■□□□□ 0.33
CLN3-213ENST00000565047 UBIAD1Q9Y5Z9 338 aa17.11■□□□□ 0.33
CLN3-213ENST00000565047 NID2Q14112 1375 aa17.11■□□□□ 0.33
CLN3-213ENST00000565047 TANC1Q9C0D5 1861 aa17.1■□□□□ 0.33
CLN3-213ENST00000565047 KLF18A0A0U1RQI7 1052 aa17.1■□□□□ 0.33
CLN3-213ENST00000565047 RBAK-RBAKDNI3L0D1 243 aa17.1■□□□□ 0.33
CLN3-213ENST00000565047 ATP9AO75110 1047 aa17.1■□□□□ 0.33
CLN3-213ENST00000565047 KCNA2P16389 499 aa17.1■□□□□ 0.33
CLN3-213ENST00000565047 ADD1P35611 737 aaKnown RBP17.1■□□□□ 0.33
CLN3-213ENST00000565047 BFSP2Q13515 415 aa17.1■□□□□ 0.33
CLN3-213ENST00000565047 NEDD9Q14511 834 aa17.1■□□□□ 0.33
CLN3-213ENST00000565047 CYFIP1Q7L576 1253 aa17.1■□□□□ 0.33
CLN3-213ENST00000565047 TEX2Q8IWB9 1127 aa17.1■□□□□ 0.33
CLN3-213ENST00000565047 C7orf31Q8N865 590 aa17.1■□□□□ 0.33
CLN3-213ENST00000565047 ALG1Q9BT22 464 aa17.1■□□□□ 0.33
CLN3-213ENST00000565047 MLXIPQ9HAP2 919 aa17.1■□□□□ 0.33
CLN3-213ENST00000565047 PCDHA6Q9UN73 950 aa17.1■□□□□ 0.33
CLN3-213ENST00000565047 PCDHA8Q9Y5H6 950 aa17.1■□□□□ 0.33
CLN3-213ENST00000565047 V9GY48 417 aaPredicted RBP17.1■□□□□ 0.33
CLN3-213ENST00000565047 CHD7Q9P2D1 2997 aa17.1■□□□□ 0.33
CLN3-213ENST00000565047 PRUNE2Q8WUY3 3088 aa17.1■□□□□ 0.33
CLN3-213ENST00000565047 H3BRB1 525 aa17.09■□□□□ 0.33
CLN3-213ENST00000565047 STXBP3O00186 592 aa17.09■□□□□ 0.33
CLN3-213ENST00000565047 EPB41L2O43491 1005 aaKnown RBP17.09■□□□□ 0.33
CLN3-213ENST00000565047 LGALS2P05162 132 aa17.09■□□□□ 0.33
CLN3-213ENST00000565047 CKBP12277 381 aa17.09■□□□□ 0.33
CLN3-213ENST00000565047 CLK2P49760 499 aaKnown RBP17.09■□□□□ 0.33
CLN3-213ENST00000565047 EVCP57679 992 aa17.09■□□□□ 0.33
CLN3-213ENST00000565047 CHMP4BP1P59074 171 aa17.09■□□□□ 0.33
CLN3-213ENST00000565047 PTK7Q13308 1070 aa17.09■□□□□ 0.33
CLN3-213ENST00000565047 HEATR3Q7Z4Q2 680 aa17.09■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms