RNA–Protein interactions for RNA: ENST00000563884.1

VPS35-204, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 759 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-204ENST00000563884 PF4P02776 101 aa7.01□□□□□ -1.29
VPS35-204ENST00000563884 GARTP22102 1010 aa7.01□□□□□ -1.29
VPS35-204ENST00000563884 CRKLP46109 303 aaKnown RBP7.01□□□□□ -1.29
VPS35-204ENST00000563884 EIF6P56537 245 aaKnown RBP7.01□□□□□ -1.29
VPS35-204ENST00000563884 PWP1Q13610 501 aa7.01□□□□□ -1.29
VPS35-204ENST00000563884 NBPF6Q5VWK0 638 aa7.01□□□□□ -1.29
VPS35-204ENST00000563884 C1QL4Q86Z23 238 aa7.01□□□□□ -1.29
VPS35-204ENST00000563884 FAM13CQ8NE31 585 aa7.01□□□□□ -1.29
VPS35-204ENST00000563884 NBPF4Q96M43 638 aa7.01□□□□□ -1.29
VPS35-204ENST00000563884 DUSP15Q9H1R2 295 aaPredicted RBP7.01□□□□□ -1.29
VPS35-204ENST00000563884 RNF186Q9NXI6 227 aa7.01□□□□□ -1.29
VPS35-204ENST00000563884 DUSP13Q9UII6 198 aa7.01□□□□□ -1.29
VPS35-204ENST00000563884 POLR2AP24928 1970 aaKnown RBP7□□□□□ -1.29
VPS35-204ENST00000563884 KIF24Q5T7B8 1368 aa7□□□□□ -1.29
VPS35-204ENST00000563884 CARMIL3Q8ND23 1372 aa7□□□□□ -1.29
VPS35-204ENST00000563884 RBM47A0AV96 593 aaKnown RBP7□□□□□ -1.29
VPS35-204ENST00000563884 NPIPB6E9PJ23 425 aa7□□□□□ -1.29
VPS35-204ENST00000563884 BPNT1O95861 308 aa7□□□□□ -1.29
VPS35-204ENST00000563884 ZSCAN22P10073 491 aaPredicted RBP7□□□□□ -1.29
VPS35-204ENST00000563884 PLCG1P19174 1290 aa7□□□□□ -1.29
VPS35-204ENST00000563884 HUNKP57058 714 aa7□□□□□ -1.29
VPS35-204ENST00000563884 EGR3Q06889 387 aa7□□□□□ -1.29
VPS35-204ENST00000563884 NFIXQ14938 502 aa7□□□□□ -1.29
VPS35-204ENST00000563884 STYK1Q6J9G0 422 aa7□□□□□ -1.29
VPS35-204ENST00000563884 BNC2Q6ZN30 1099 aaPredicted RBP7□□□□□ -1.29
VPS35-204ENST00000563884 LCNL1Q6ZST4 164 aa7□□□□□ -1.29
VPS35-204ENST00000563884 RELL1Q8IUW5 271 aa7□□□□□ -1.29
VPS35-204ENST00000563884 IFNL2Q8IZJ0 200 aa7□□□□□ -1.29
VPS35-204ENST00000563884 USHBP1Q8N6Y0 703 aa7□□□□□ -1.29
VPS35-204ENST00000563884 GATAD2BQ8WXI9 593 aa7□□□□□ -1.29
VPS35-204ENST00000563884 COG3Q96JB2 828 aa7□□□□□ -1.29
VPS35-204ENST00000563884 BRIP1Q9BX63 1249 aa7□□□□□ -1.29
VPS35-204ENST00000563884 KCNH3Q9ULD8 1083 aa7□□□□□ -1.29
VPS35-204ENST00000563884 CORINQ9Y5Q5 1042 aa7□□□□□ -1.29
VPS35-204ENST00000563884 A0A1W2PP64 1363 aa6.99□□□□□ -1.29
VPS35-204ENST00000563884 LOC105371045A0A1W2PR82 267 aa6.99□□□□□ -1.29
VPS35-204ENST00000563884 TCAF2A6NFQ2 919 aa6.99□□□□□ -1.29
VPS35-204ENST00000563884 UPK3BL1B0FP48 263 aa6.99□□□□□ -1.29
VPS35-204ENST00000563884 UPK3BL2E5RIL1 263 aa6.99□□□□□ -1.29
VPS35-204ENST00000563884 FZD9O00144 591 aa6.99□□□□□ -1.29
VPS35-204ENST00000563884 NPHP1O15259 732 aa6.99□□□□□ -1.29
VPS35-204ENST00000563884 F13A1P00488 732 aa6.99□□□□□ -1.29
VPS35-204ENST00000563884 HPXP02790 462 aa6.99□□□□□ -1.29
VPS35-204ENST00000563884 KRT1P04264 644 aa6.99□□□□□ -1.29
VPS35-204ENST00000563884 TRHRP34981 398 aaPredicted RBP6.99□□□□□ -1.29
VPS35-204ENST00000563884 YARSP54577 528 aaKnown RBP6.99□□□□□ -1.29
VPS35-204ENST00000563884 RGMBQ6NW40 437 aa6.99□□□□□ -1.29
VPS35-204ENST00000563884 ATG14Q6ZNE5 492 aa6.99□□□□□ -1.29
VPS35-204ENST00000563884 RTKN2Q8IZC4 609 aa6.99□□□□□ -1.29
VPS35-204ENST00000563884 CYB5D2Q8WUJ1 264 aa6.99□□□□□ -1.29
VPS35-204ENST00000563884 KRTAP4-9Q9BYQ8 210 aa6.99□□□□□ -1.29
VPS35-204ENST00000563884 ZNF408Q9H9D4 720 aa6.99□□□□□ -1.29
VPS35-204ENST00000563884 TERF2IPQ9NYB0 399 aa6.99□□□□□ -1.29
VPS35-204ENST00000563884 UNC80Q8N2C7 3258 aa6.98□□□□□ -1.29
VPS35-204ENST00000563884 FLT4P35916 1363 aa6.98□□□□□ -1.29
VPS35-204ENST00000563884 COL15A1P39059 1388 aa6.98□□□□□ -1.29
VPS35-204ENST00000563884 A0A1W2PPC1 479 aa6.98□□□□□ -1.29
VPS35-204ENST00000563884 ERVV-2B6SEH9 535 aa6.98□□□□□ -1.29
VPS35-204ENST00000563884 HSP90AB1P08238 724 aaKnown RBP6.98□□□□□ -1.29
VPS35-204ENST00000563884 GBP2P32456 591 aaPredicted RBP6.98□□□□□ -1.29
VPS35-204ENST00000563884 IARSP41252 1262 aaKnown RBP6.98□□□□□ -1.29
VPS35-204ENST00000563884 TNNI2P48788 182 aa6.98□□□□□ -1.29
VPS35-204ENST00000563884 KIF23Q02241 960 aaPredicted RBP6.98□□□□□ -1.29
VPS35-204ENST00000563884 GAB4Q2WGN9 574 aa6.98□□□□□ -1.29
VPS35-204ENST00000563884 SIAH1Q8IUQ4 282 aa6.98□□□□□ -1.29
VPS35-204ENST00000563884 DTWD2Q8NBA8 298 aa6.98□□□□□ -1.29
VPS35-204ENST00000563884 PPP1R13LQ8WUF5 828 aa6.98□□□□□ -1.29
VPS35-204ENST00000563884 KCNN1Q92952 543 aa6.98□□□□□ -1.29
VPS35-204ENST00000563884 GPR62Q9BZJ7 368 aa6.98□□□□□ -1.29
VPS35-204ENST00000563884 ADARB2Q9NS39 739 aaKnown RBP6.98□□□□□ -1.29
VPS35-204ENST00000563884 NARFQ9UHQ1 456 aa6.98□□□□□ -1.29
VPS35-204ENST00000563884 NCAPD2Q15021 1401 aa6.98□□□□□ -1.29
VPS35-204ENST00000563884 F6X3S4 739 aa6.97□□□□□ -1.29
VPS35-204ENST00000563884 GREM1O60565 184 aa6.97□□□□□ -1.29
VPS35-204ENST00000563884 ST5P78524 1137 aa6.97□□□□□ -1.29
VPS35-204ENST00000563884 KCNA10Q16322 511 aa6.97□□□□□ -1.29
VPS35-204ENST00000563884 TMEM201Q5SNT2 666 aa6.97□□□□□ -1.29
VPS35-204ENST00000563884 TSPYL5Q86VY4 417 aaPredicted RBP6.97□□□□□ -1.29
VPS35-204ENST00000563884 MASTLQ96GX5 879 aa6.97□□□□□ -1.29
VPS35-204ENST00000563884 RNF32Q9H0A6 362 aa6.97□□□□□ -1.29
VPS35-204ENST00000563884 COPRSQ9NQ92 184 aa6.97□□□□□ -1.29
VPS35-204ENST00000563884 ZNF277Q9NRM2 450 aaPredicted RBP6.97□□□□□ -1.29
VPS35-204ENST00000563884 KBTBD4Q9NVX7 518 aa6.97□□□□□ -1.29
VPS35-204ENST00000563884 CDHR2Q9BYE9 1310 aa6.97□□□□□ -1.29
VPS35-204ENST00000563884 ETV2O00321 342 aaPredicted RBP6.96□□□□□ -1.3
VPS35-204ENST00000563884 LRRN2O75325 713 aa6.96□□□□□ -1.3
VPS35-204ENST00000563884 PHKG2P15735 406 aa6.96□□□□□ -1.3
VPS35-204ENST00000563884 PLA2G5P39877 138 aa6.96□□□□□ -1.3
VPS35-204ENST00000563884 TRIM26Q12899 539 aaPredicted RBP6.96□□□□□ -1.3
VPS35-204ENST00000563884 SYNE4Q8N205 404 aa6.96□□□□□ -1.3
VPS35-204ENST00000563884 OXR1Q8N573 874 aa6.96□□□□□ -1.3
VPS35-204ENST00000563884 C2orf69Q8N8R5 385 aa6.96□□□□□ -1.3
VPS35-204ENST00000563884 PDZD8Q8NEN9 1154 aa6.96□□□□□ -1.3
VPS35-204ENST00000563884 ZNF296Q8WUU4 475 aaPredicted RBP6.96□□□□□ -1.3
VPS35-204ENST00000563884 DHX38Q92620 1227 aaKnown RBP6.96□□□□□ -1.3
VPS35-204ENST00000563884 FAM122AQ96E09 287 aa6.96□□□□□ -1.3
VPS35-204ENST00000563884 SOS1Q07889 1333 aaPredicted RBP6.96□□□□□ -1.3
VPS35-204ENST00000563884 KDM3BQ7LBC6 1761 aa6.95□□□□□ -1.3
VPS35-204ENST00000563884 MINDY4BA8MYZ0 360 aa6.95□□□□□ -1.3
VPS35-204ENST00000563884 H0YGN5 161 aa6.95□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms