RNA–Protein interactions for RNA: ENST00000562662.1

VPS39-206, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 526 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-206ENST00000562662 RBM43Q6ZSC3 357 aaKnown RBP15.31■□□□□ 0.04
VPS39-206ENST00000562662 IWS1Q96ST2 819 aa15.31■□□□□ 0.04
VPS39-206ENST00000562662 MMTAG2Q9BU76 263 aaKnown RBP15.31■□□□□ 0.04
VPS39-206ENST00000562662 RAB34Q9BZG1 259 aa15.31■□□□□ 0.04
VPS39-206ENST00000562662 WDR11Q9BZH6 1224 aa15.31■□□□□ 0.04
VPS39-206ENST00000562662 LRWD1Q9UFC0 647 aa15.31■□□□□ 0.04
VPS39-206ENST00000562662 CPA4Q9UI42 421 aa15.31■□□□□ 0.04
VPS39-206ENST00000562662 VAV3Q9UKW4 847 aa15.31■□□□□ 0.04
VPS39-206ENST00000562662 PCDHA12Q9UN75 941 aa15.31■□□□□ 0.04
VPS39-206ENST00000562662 THSD7BQ9C0I4 1608 aa15.31■□□□□ 0.04
VPS39-206ENST00000562662 ACTN4O43707 911 aaKnown RBP15.3■□□□□ 0.04
VPS39-206ENST00000562662 AOC2O75106 756 aa15.3■□□□□ 0.04
VPS39-206ENST00000562662 PSMD10O75832 226 aa15.3■□□□□ 0.04
VPS39-206ENST00000562662 PGK2P07205 417 aa15.3■□□□□ 0.04
VPS39-206ENST00000562662 EDNRBP24530 442 aa15.3■□□□□ 0.04
VPS39-206ENST00000562662 TXLNAP40222 546 aa15.3■□□□□ 0.04
VPS39-206ENST00000562662 NOGQ13253 232 aa15.3■□□□□ 0.04
VPS39-206ENST00000562662 GRM1Q13255 1194 aa15.3■□□□□ 0.04
VPS39-206ENST00000562662 KARSQ15046 597 aaKnown RBP15.3■□□□□ 0.04
VPS39-206ENST00000562662 E2F4Q16254 413 aa15.3■□□□□ 0.04
VPS39-206ENST00000562662 CAMK4Q16566 473 aa15.3■□□□□ 0.04
VPS39-206ENST00000562662 LONRF3Q496Y0 759 aa15.3■□□□□ 0.04
VPS39-206ENST00000562662 C17orf99Q6UX52 265 aa15.3■□□□□ 0.04
VPS39-206ENST00000562662 CABP7Q86V35 215 aa15.3■□□□□ 0.04
VPS39-206ENST00000562662 PDILTQ8N807 584 aa15.3■□□□□ 0.04
VPS39-206ENST00000562662 CAPNS2Q96L46 248 aa15.3■□□□□ 0.04
VPS39-206ENST00000562662 INPP4AQ96PE3 977 aaPredicted RBP15.3■□□□□ 0.04
VPS39-206ENST00000562662 PANK2Q9BZ23 570 aa15.3■□□□□ 0.04
VPS39-206ENST00000562662 TNMDQ9H2S6 317 aa15.3■□□□□ 0.04
VPS39-206ENST00000562662 ADD3Q9UEY8 706 aaKnown RBP15.3■□□□□ 0.04
VPS39-206ENST00000562662 SERTAD1Q9UHV2 236 aa15.3■□□□□ 0.04
VPS39-206ENST00000562662 SYCE3A1L190 88 aa15.29■□□□□ 0.04
VPS39-206ENST00000562662 CTAGE5O15320 804 aa15.29■□□□□ 0.04
VPS39-206ENST00000562662 TLR2O60603 784 aa15.29■□□□□ 0.04
VPS39-206ENST00000562662 STAM2O75886 525 aa15.29■□□□□ 0.04
VPS39-206ENST00000562662 RGS20O76081 388 aa15.29■□□□□ 0.04
VPS39-206ENST00000562662 UBA7P41226 1012 aa15.29■□□□□ 0.04
VPS39-206ENST00000562662 ZNF445P59923 1031 aa15.29■□□□□ 0.04
VPS39-206ENST00000562662 SEMA3FQ13275 785 aa15.29■□□□□ 0.04
VPS39-206ENST00000562662 GPR142Q7Z601 462 aa15.29■□□□□ 0.04
VPS39-206ENST00000562662 ELOA2Q8IYF1 753 aaPredicted RBP15.29■□□□□ 0.04
VPS39-206ENST00000562662 ABRAQ8N0Z2 381 aa15.29■□□□□ 0.04
VPS39-206ENST00000562662 GPRASP2Q96D09 838 aa15.29■□□□□ 0.04
VPS39-206ENST00000562662 ZNF577Q9BSK1 485 aa15.29■□□□□ 0.04
VPS39-206ENST00000562662 ZFYVE28Q9HCC9 887 aa15.29■□□□□ 0.04
VPS39-206ENST00000562662 AGO4Q9HCK5 861 aaKnown RBP15.29■□□□□ 0.04
VPS39-206ENST00000562662 DISC1Q9NRI5 854 aa15.29■□□□□ 0.04
VPS39-206ENST00000562662 KCNH7Q9NS40 1196 aa15.29■□□□□ 0.04
VPS39-206ENST00000562662 ZSWIM8A7E2V4 1837 aa15.29■□□□□ 0.04
VPS39-206ENST00000562662 LOXHD1Q8IVV2 1947 aa15.28■□□□□ 0.04
VPS39-206ENST00000562662 STRNO43815 780 aa15.28■□□□□ 0.04
VPS39-206ENST00000562662 LETM1O95202 739 aaPredicted RBP15.28■□□□□ 0.04
VPS39-206ENST00000562662 MAPK4P31152 587 aa15.28■□□□□ 0.04
VPS39-206ENST00000562662 CRHR2Q13324 411 aa15.28■□□□□ 0.04
VPS39-206ENST00000562662 MTMR1Q13613 665 aa15.28■□□□□ 0.04
VPS39-206ENST00000562662 STXBP2Q15833 593 aa15.28■□□□□ 0.04
VPS39-206ENST00000562662 ZNF792Q3KQV3 632 aa15.28■□□□□ 0.04
VPS39-206ENST00000562662 LRCH2Q5VUJ6 765 aa15.28■□□□□ 0.04
VPS39-206ENST00000562662 B3GNT9Q6UX72 402 aa15.28■□□□□ 0.04
VPS39-206ENST00000562662 LRRC15Q8TF66 581 aa15.28■□□□□ 0.04
VPS39-206ENST00000562662 DHX58Q96C10 678 aa15.28■□□□□ 0.04
VPS39-206ENST00000562662 PNMA5Q96PV4 448 aa15.28■□□□□ 0.04
VPS39-206ENST00000562662 NUDT12Q9BQG2 462 aa15.28■□□□□ 0.04
VPS39-206ENST00000562662 PYM1Q9BRP8 204 aaKnown RBP15.28■□□□□ 0.04
VPS39-206ENST00000562662 USP25Q9UHP3 1055 aa15.28■□□□□ 0.04
VPS39-206ENST00000562662 LOC102724159A0A0B4J2E5 919 aa15.27■□□□□ 0.04
VPS39-206ENST00000562662 IPO5O00410 1097 aaKnown RBP15.27■□□□□ 0.04
VPS39-206ENST00000562662 DHX15O43143 795 aaKnown RBP15.27■□□□□ 0.04
VPS39-206ENST00000562662 CA12O43570 354 aa15.27■□□□□ 0.04
VPS39-206ENST00000562662 GAS7O60861 476 aa15.27■□□□□ 0.04
VPS39-206ENST00000562662 ADORA2AP29274 412 aa15.27■□□□□ 0.04
VPS39-206ENST00000562662 GRB10Q13322 594 aa15.27■□□□□ 0.04
VPS39-206ENST00000562662 ITGB3BPQ13352 177 aaPredicted RBP15.27■□□□□ 0.04
VPS39-206ENST00000562662 PPP2R5CQ13362 524 aa15.27■□□□□ 0.04
VPS39-206ENST00000562662 GRB14Q14449 540 aa15.27■□□□□ 0.04
VPS39-206ENST00000562662 PWP2Q15269 919 aaKnown RBP15.27■□□□□ 0.04
VPS39-206ENST00000562662 NAALADL2Q58DX5 795 aa15.27■□□□□ 0.04
VPS39-206ENST00000562662 HYIQ5T013 277 aa15.27■□□□□ 0.04
VPS39-206ENST00000562662 PDXDC2PQ6P474 469 aa15.27■□□□□ 0.04
VPS39-206ENST00000562662 OTOP1Q7RTM1 612 aa15.27■□□□□ 0.04
VPS39-206ENST00000562662 SH3RF1Q7Z6J0 888 aa15.27■□□□□ 0.04
VPS39-206ENST00000562662 PLEKHH3Q7Z736 793 aa15.27■□□□□ 0.04
VPS39-206ENST00000562662 NLRX1Q86UT6 975 aa15.27■□□□□ 0.04
VPS39-206ENST00000562662 CKAP2LQ8IYA6 745 aa15.27■□□□□ 0.04
VPS39-206ENST00000562662 IQUBQ8NA54 791 aa15.27■□□□□ 0.04
VPS39-206ENST00000562662 CNNM3Q8NE01 707 aa15.27■□□□□ 0.04
VPS39-206ENST00000562662 MORC4Q8TE76 937 aa15.27■□□□□ 0.04
VPS39-206ENST00000562662 SNX29Q8TEQ0 813 aa15.27■□□□□ 0.04
VPS39-206ENST00000562662 RIT2Q99578 217 aa15.27■□□□□ 0.04
VPS39-206ENST00000562662 SDF4Q9BRK5 362 aa15.27■□□□□ 0.04
VPS39-206ENST00000562662 TEKT3Q9BXF9 490 aa15.27■□□□□ 0.04
VPS39-206ENST00000562662 CCDC39Q9UFE4 941 aa15.27■□□□□ 0.04
VPS39-206ENST00000562662 EML1O00423 815 aa15.26■□□□□ 0.03
VPS39-206ENST00000562662 FOXN1O15353 648 aa15.26■□□□□ 0.03
VPS39-206ENST00000562662 MAFGO15525 162 aa15.26■□□□□ 0.03
VPS39-206ENST00000562662 SLC26A4O43511 780 aa15.26■□□□□ 0.03
VPS39-206ENST00000562662 ATP9AO75110 1047 aa15.26■□□□□ 0.03
VPS39-206ENST00000562662 COBLO75128 1261 aa15.26■□□□□ 0.03
VPS39-206ENST00000562662 EIF3JO75822 258 aaKnown RBP15.26■□□□□ 0.03
VPS39-206ENST00000562662 ALDH1A1P00352 501 aa15.26■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms