RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 INPP5FQ9Y2H2 1132 aa10.22□□□□□ -0.77
VPS39-205ENST00000562258 STRCQ7RTU9 1775 aa10.22□□□□□ -0.77
VPS39-205ENST00000562258 RIC1Q4ADV7 1423 aa10.22□□□□□ -0.77
VPS39-205ENST00000562258 CAPN15O75808 1086 aa10.22□□□□□ -0.77
VPS39-205ENST00000562258 RPS6KC1Q96S38 1066 aa10.22□□□□□ -0.77
VPS39-205ENST00000562258 MTA3Q9BTC8 594 aa10.22□□□□□ -0.77
VPS39-205ENST00000562258 AKAP12Q02952 1782 aa10.22□□□□□ -0.77
VPS39-205ENST00000562258 PALM3A6NDB9 673 aaPredicted RBP10.22□□□□□ -0.77
VPS39-205ENST00000562258 K7ERI5 159 aa10.22□□□□□ -0.77
VPS39-205ENST00000562258 ABL1P00519 1130 aa10.22□□□□□ -0.77
VPS39-205ENST00000562258 PLA2G4BP0C869 781 aa10.22□□□□□ -0.77
VPS39-205ENST00000562258 ZSCAN20P17040 1043 aaPredicted RBP10.22□□□□□ -0.77
VPS39-205ENST00000562258 NT5C2P49902 561 aa10.22□□□□□ -0.77
VPS39-205ENST00000562258 KIAA1468Q9P260 1216 aa10.22□□□□□ -0.77
VPS39-205ENST00000562258 ANAPC4Q9UJX5 808 aa10.22□□□□□ -0.77
VPS39-205ENST00000562258 LRFN2Q9ULH4 789 aa10.22□□□□□ -0.77
VPS39-205ENST00000562258 PPP1R9AQ9ULJ8 1098 aa10.22□□□□□ -0.77
VPS39-205ENST00000562258 STK24Q9Y6E0 443 aa10.22□□□□□ -0.77
VPS39-205ENST00000562258 ABCC6O95255 1503 aa10.22□□□□□ -0.77
VPS39-205ENST00000562258 CALUO43852 315 aaPredicted RBP10.22□□□□□ -0.77
VPS39-205ENST00000562258 IGSF3O75054 1194 aa10.22□□□□□ -0.77
VPS39-205ENST00000562258 FCGRTP55899 365 aa10.22□□□□□ -0.77
VPS39-205ENST00000562258 RESTQ13127 1097 aa10.22□□□□□ -0.77
VPS39-205ENST00000562258 JAKMIP2Q96AA8 810 aa10.22□□□□□ -0.77
VPS39-205ENST00000562258 CTAGE1Q96RT6 745 aa10.22□□□□□ -0.77
VPS39-205ENST00000562258 FAM207AQ9NSI2 230 aaPredicted RBP10.22□□□□□ -0.77
VPS39-205ENST00000562258 PPP2R3BQ9Y5P8 575 aa10.22□□□□□ -0.77
VPS39-205ENST00000562258 SALL3Q9BXA9 1300 aa10.21□□□□□ -0.77
VPS39-205ENST00000562258 KIF28PB7ZC32 967 aa10.21□□□□□ -0.77
VPS39-205ENST00000562258 CAVIN2O95810 425 aa10.21□□□□□ -0.77
VPS39-205ENST00000562258 C15orf52Q6ZUT6 534 aaKnown RBP10.21□□□□□ -0.77
VPS39-205ENST00000562258 KIF2CQ99661 725 aa10.21□□□□□ -0.77
VPS39-205ENST00000562258 POLR3EQ9NVU0 708 aa10.21□□□□□ -0.77
VPS39-205ENST00000562258 SYNRGQ9UMZ2 1314 aa10.21□□□□□ -0.77
VPS39-205ENST00000562258 GOLGA8IPA6NC78 632 aa10.21□□□□□ -0.78
VPS39-205ENST00000562258 GOLGA8JA6NMD2 632 aa10.21□□□□□ -0.78
VPS39-205ENST00000562258 PRPF6O94906 941 aaKnown RBP10.21□□□□□ -0.78
VPS39-205ENST00000562258 CTNNA2P26232 953 aa10.21□□□□□ -0.78
VPS39-205ENST00000562258 RHPN2Q8IUC4 686 aa10.21□□□□□ -0.78
VPS39-205ENST00000562258 MB21D1Q8N884 522 aa10.21□□□□□ -0.78
VPS39-205ENST00000562258 SPATC1LQ9H0A9 340 aa10.21□□□□□ -0.78
VPS39-205ENST00000562258 EHD4Q9H223 541 aa10.21□□□□□ -0.78
VPS39-205ENST00000562258 ST7Q9NRC1 585 aa10.21□□□□□ -0.78
VPS39-205ENST00000562258 GAKO14976 1311 aa10.21□□□□□ -0.78
VPS39-205ENST00000562258 MANSC4A6NHS7 340 aaPredicted RBP10.21□□□□□ -0.78
VPS39-205ENST00000562258 CXCL11O14625 94 aa10.21□□□□□ -0.78
VPS39-205ENST00000562258 SLC25A27O95847 323 aa10.21□□□□□ -0.78
VPS39-205ENST00000562258 TFRCP02786 760 aaKnown RBP10.21□□□□□ -0.78
VPS39-205ENST00000562258 KRT9P35527 623 aa10.21□□□□□ -0.78
VPS39-205ENST00000562258 STAT5BP51692 787 aa10.21□□□□□ -0.78
VPS39-205ENST00000562258 CDR1P51861 262 aa10.21□□□□□ -0.78
VPS39-205ENST00000562258 YARSP54577 528 aaKnown RBP10.21□□□□□ -0.78
VPS39-205ENST00000562258 ADAM9Q13443 819 aa10.21□□□□□ -0.78
VPS39-205ENST00000562258 MLKLQ8NB16 471 aa10.21□□□□□ -0.78
VPS39-205ENST00000562258 MICAL1Q8TDZ2 1067 aa10.21□□□□□ -0.78
VPS39-205ENST00000562258 TBC1D22BQ9NU19 505 aa10.21□□□□□ -0.78
VPS39-205ENST00000562258 TMEM110-MUSTN1A8MSY1 372 aa10.2□□□□□ -0.78
VPS39-205ENST00000562258 RPN1P04843 607 aaKnown RBP10.2□□□□□ -0.78
VPS39-205ENST00000562258 TFAMQ00059 246 aaKnown RBP10.2□□□□□ -0.78
VPS39-205ENST00000562258 PTPN21Q16825 1174 aa10.2□□□□□ -0.78
VPS39-205ENST00000562258 TWF2Q6IBS0 349 aaKnown RBP10.2□□□□□ -0.78
VPS39-205ENST00000562258 PLEKHH3Q7Z736 793 aa10.2□□□□□ -0.78
VPS39-205ENST00000562258 PPP1R13LQ8WUF5 828 aa10.2□□□□□ -0.78
VPS39-205ENST00000562258 RIC8AQ9NPQ8 531 aa10.2□□□□□ -0.78
VPS39-205ENST00000562258 ZNF302Q9NR11 478 aa10.2□□□□□ -0.78
VPS39-205ENST00000562258 MAD2L2Q9UI95 211 aa10.2□□□□□ -0.78
VPS39-205ENST00000562258 LUC7L2Q9Y383 392 aaKnown RBP10.2□□□□□ -0.78
VPS39-205ENST00000562258 ANKRD62A6NC57 917 aa10.2□□□□□ -0.78
VPS39-205ENST00000562258 TBC1D8O95759 1140 aa10.2□□□□□ -0.78
VPS39-205ENST00000562258 TMEM191BP0C7N4 346 aa10.2□□□□□ -0.78
VPS39-205ENST00000562258 CETN2P41208 172 aa10.2□□□□□ -0.78
VPS39-205ENST00000562258 CNTN2Q02246 1040 aa10.2□□□□□ -0.78
VPS39-205ENST00000562258 TFDP1Q14186 410 aa10.2□□□□□ -0.78
VPS39-205ENST00000562258 FKBP1CQ5VVH2 108 aa10.2□□□□□ -0.78
VPS39-205ENST00000562258 FBXO16Q8IX29 292 aaPredicted RBP10.2□□□□□ -0.78
VPS39-205ENST00000562258 CCDC42Q96M95 316 aa10.2□□□□□ -0.78
VPS39-205ENST00000562258 JPH2Q9BR39 696 aaPredicted RBP10.2□□□□□ -0.78
VPS39-205ENST00000562258 JPH1Q9HDC5 661 aaPredicted RBP10.2□□□□□ -0.78
VPS39-205ENST00000562258 SH3GLB2Q9NR46 395 aa10.2□□□□□ -0.78
VPS39-205ENST00000562258 SLC9A2Q9UBY0 812 aa10.2□□□□□ -0.78
VPS39-205ENST00000562258 RCOR1Q9UKL0 485 aa10.2□□□□□ -0.78
VPS39-205ENST00000562258 WDR19Q8NEZ3 1342 aa10.2□□□□□ -0.78
VPS39-205ENST00000562258 RARBP10826 455 aa10.2□□□□□ -0.78
VPS39-205ENST00000562258 QARSP47897 775 aaKnown RBP10.2□□□□□ -0.78
VPS39-205ENST00000562258 ARPP19P56211 112 aa10.2□□□□□ -0.78
VPS39-205ENST00000562258 KRT76Q01546 638 aa10.2□□□□□ -0.78
VPS39-205ENST00000562258 PPATQ06203 517 aa10.2□□□□□ -0.78
VPS39-205ENST00000562258 PROCA1Q8NCQ7 364 aaPredicted RBP10.2□□□□□ -0.78
VPS39-205ENST00000562258 ZC3H15Q8WU90 426 aaKnown RBP10.2□□□□□ -0.78
VPS39-205ENST00000562258 PCDHA10Q9Y5I2 948 aa10.2□□□□□ -0.78
VPS39-205ENST00000562258 TMEM88BA6NKF7 163 aa10.19□□□□□ -0.78
VPS39-205ENST00000562258 CYP2C19P33261 490 aa10.19□□□□□ -0.78
VPS39-205ENST00000562258 GCLCP48506 637 aaPredicted RBP10.19□□□□□ -0.78
VPS39-205ENST00000562258 HTRA3P83110 453 aa10.19□□□□□ -0.78
VPS39-205ENST00000562258 NOGQ13253 232 aa10.19□□□□□ -0.78
VPS39-205ENST00000562258 KLRG1Q96E93 195 aa10.19□□□□□ -0.78
VPS39-205ENST00000562258 IWS1Q96ST2 819 aa10.19□□□□□ -0.78
VPS39-205ENST00000562258 LXNQ9BS40 222 aa10.19□□□□□ -0.78
VPS39-205ENST00000562258 KIAA1683Q9H0B3 1180 aa10.19□□□□□ -0.78
VPS39-205ENST00000562258 ARMCX3Q9UH62 379 aaPredicted RBP10.19□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms