RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 MORC3Q14149 939 aa14.68□□□□□ -0.06
CLK3-206ENST00000562078 POSTNQ15063 836 aa14.68□□□□□ -0.06
CLK3-206ENST00000562078 SH3RF3Q8TEJ3 882 aaPredicted RBP14.68□□□□□ -0.06
CLK3-206ENST00000562078 RNF26Q9BY78 433 aaPredicted RBP14.68□□□□□ -0.06
CLK3-206ENST00000562078 EBF2Q9HAK2 575 aa14.68□□□□□ -0.06
CLK3-206ENST00000562078 HOMER3Q9NSC5 361 aa14.68□□□□□ -0.06
CLK3-206ENST00000562078 L3MBTL1Q9Y468 752 aa14.68□□□□□ -0.06
CLK3-206ENST00000562078 GOLGB1Q14789 3259 aaKnown RBP14.68□□□□□ -0.06
CLK3-206ENST00000562078 POLD1P28340 1107 aa14.68□□□□□ -0.06
CLK3-206ENST00000562078 CCT6AP40227 531 aaKnown RBP14.68□□□□□ -0.06
CLK3-206ENST00000562078 IFFO1Q0D2I5 559 aa14.68□□□□□ -0.06
CLK3-206ENST00000562078 TROAPQ12815 778 aa14.68□□□□□ -0.06
CLK3-206ENST00000562078 NR5A1Q13285 461 aa14.68□□□□□ -0.06
CLK3-206ENST00000562078 XRCC4Q13426 336 aa14.68□□□□□ -0.06
CLK3-206ENST00000562078 QPCTQ16769 361 aa14.68□□□□□ -0.06
CLK3-206ENST00000562078 CUL5Q93034 780 aa14.68□□□□□ -0.06
CLK3-206ENST00000562078 CCDC51Q96ER9 411 aa14.68□□□□□ -0.06
CLK3-206ENST00000562078 FAM237AA0A1B0GTK4 181 aa14.67□□□□□ -0.06
CLK3-206ENST00000562078 G3V3G9 751 aa14.67□□□□□ -0.06
CLK3-206ENST00000562078 PPP6R2O75170 966 aa14.67□□□□□ -0.06
CLK3-206ENST00000562078 MATR3P43243 847 aaKnown RBP eCLIP14.67□□□□□ -0.06
CLK3-206ENST00000562078 ELF3P78545 371 aaPredicted RBP14.67□□□□□ -0.06
CLK3-206ENST00000562078 SBK1Q52WX2 424 aa14.67□□□□□ -0.06
CLK3-206ENST00000562078 CCDC122Q5T0U0 273 aa14.67□□□□□ -0.06
CLK3-206ENST00000562078 DCAF8Q5TAQ9 597 aa14.67□□□□□ -0.06
CLK3-206ENST00000562078 NUP88Q99567 741 aaPredicted RBP14.67□□□□□ -0.06
CLK3-206ENST00000562078 DACH1Q9UI36 760 aa14.67□□□□□ -0.06
CLK3-206ENST00000562078 C15orf41Q9Y2V0 281 aa14.67□□□□□ -0.06
CLK3-206ENST00000562078 BACH1O14867 736 aa14.67□□□□□ -0.06
CLK3-206ENST00000562078 NDUFA10O95299 355 aa14.67□□□□□ -0.06
CLK3-206ENST00000562078 ANP32DO95626 131 aa14.67□□□□□ -0.06
CLK3-206ENST00000562078 IL1R1P14778 569 aa14.67□□□□□ -0.06
CLK3-206ENST00000562078 PLCD1P51178 756 aa14.67□□□□□ -0.06
CLK3-206ENST00000562078 FUT2Q10981 343 aa14.67□□□□□ -0.06
CLK3-206ENST00000562078 PPP2R5BQ15173 497 aa14.67□□□□□ -0.06
CLK3-206ENST00000562078 OXER1Q8TDS5 423 aa14.67□□□□□ -0.06
CLK3-206ENST00000562078 SHISA4Q96DD7 197 aa14.67□□□□□ -0.06
CLK3-206ENST00000562078 ZNF570Q96NI8 536 aa14.67□□□□□ -0.06
CLK3-206ENST00000562078 MTFR1LQ9H019 292 aa14.67□□□□□ -0.06
CLK3-206ENST00000562078 VPS54Q9P1Q0 977 aa14.67□□□□□ -0.06
CLK3-206ENST00000562078 EPN1Q9Y6I3 576 aaPredicted RBP14.67□□□□□ -0.06
CLK3-206ENST00000562078 KIF13BQ9NQT8 1826 aa14.67□□□□□ -0.06
CLK3-206ENST00000562078 TSPY2A6NKD2 308 aa14.66□□□□□ -0.06
CLK3-206ENST00000562078 COBLO75128 1261 aa14.66□□□□□ -0.06
CLK3-206ENST00000562078 DDAH1O94760 285 aa14.66□□□□□ -0.06
CLK3-206ENST00000562078 UPP2O95045 317 aa14.66□□□□□ -0.06
CLK3-206ENST00000562078 PRPHP41219 470 aa14.66□□□□□ -0.06
CLK3-206ENST00000562078 TOB1P50616 345 aaPredicted RBP14.66□□□□□ -0.06
CLK3-206ENST00000562078 EPHB4P54760 987 aa14.66□□□□□ -0.06
CLK3-206ENST00000562078 CCDC70Q6NSX1 233 aa14.66□□□□□ -0.06
CLK3-206ENST00000562078 DRAXINQ8NBI3 349 aaPredicted RBP14.66□□□□□ -0.06
CLK3-206ENST00000562078 EYA3Q99504 573 aa14.66□□□□□ -0.06
CLK3-206ENST00000562078 FOXP1Q9H334 677 aaPredicted RBP14.66□□□□□ -0.06
CLK3-206ENST00000562078 JADE2Q9NQC1 790 aa14.66□□□□□ -0.06
CLK3-206ENST00000562078 CALM1P0DP23 149 aa14.66□□□□□ -0.06
CLK3-206ENST00000562078 CALM2P0DP24 149 aa14.66□□□□□ -0.06
CLK3-206ENST00000562078 CALM3P0DP25 149 aa14.66□□□□□ -0.06
CLK3-206ENST00000562078 HPDP32754 393 aaPredicted RBP14.66□□□□□ -0.06
CLK3-206ENST00000562078 GSTO1P78417 241 aa14.66□□□□□ -0.06
CLK3-206ENST00000562078 PDCD2Q16342 344 aaPredicted RBP14.66□□□□□ -0.06
CLK3-206ENST00000562078 PKN1Q16512 942 aa14.66□□□□□ -0.06
CLK3-206ENST00000562078 FILIP1LQ4L180 1135 aa14.66□□□□□ -0.06
CLK3-206ENST00000562078 HIBCHQ6NVY1 386 aaPredicted RBP14.66□□□□□ -0.06
CLK3-206ENST00000562078 CCDC43Q96MW1 224 aaKnown RBP14.66□□□□□ -0.06
CLK3-206ENST00000562078 KCNA4P22459 653 aa14.65□□□□□ -0.06
CLK3-206ENST00000562078 SARSP49591 514 aaKnown RBP14.65□□□□□ -0.06
CLK3-206ENST00000562078 HERVK_113P62684 666 aa14.65□□□□□ -0.06
CLK3-206ENST00000562078 TMTC3Q6ZXV5 915 aa14.65□□□□□ -0.06
CLK3-206ENST00000562078 CCDC47Q96A33 483 aaKnown RBP14.65□□□□□ -0.06
CLK3-206ENST00000562078 DYNLL2Q96FJ2 89 aa14.65□□□□□ -0.06
CLK3-206ENST00000562078 HAUS4Q9H6D7 363 aa14.65□□□□□ -0.06
CLK3-206ENST00000562078 SERTAD1Q9UHV2 236 aa14.65□□□□□ -0.06
CLK3-206ENST00000562078 KRT9P35527 623 aa14.65□□□□□ -0.06
CLK3-206ENST00000562078 DOK7Q18PE1 504 aa14.65□□□□□ -0.06
CLK3-206ENST00000562078 NT5DC1Q5TFE4 455 aa14.65□□□□□ -0.06
CLK3-206ENST00000562078 C12orf60Q5U649 245 aa14.65□□□□□ -0.06
CLK3-206ENST00000562078 EMBQ6PCB8 327 aa14.65□□□□□ -0.06
CLK3-206ENST00000562078 TRIM74Q86UV6 250 aa14.65□□□□□ -0.06
CLK3-206ENST00000562078 TRIM73Q86UV7 250 aa14.65□□□□□ -0.06
CLK3-206ENST00000562078 TGFBRAP1Q8WUH2 860 aa14.65□□□□□ -0.06
CLK3-206ENST00000562078 COA1Q9GZY4 146 aa14.65□□□□□ -0.06
CLK3-206ENST00000562078 V9GY48 417 aaPredicted RBP14.65□□□□□ -0.06
CLK3-206ENST00000562078 CNTNAP5Q8WYK1 1306 aa14.64□□□□□ -0.07
CLK3-206ENST00000562078 EIF4E1BA6NMX2 242 aaKnown RBP14.64□□□□□ -0.07
CLK3-206ENST00000562078 POLR2DO15514 142 aaKnown RBP14.64□□□□□ -0.07
CLK3-206ENST00000562078 RTN3O95197 1032 aaPredicted RBP14.64□□□□□ -0.07
CLK3-206ENST00000562078 BAG3O95817 575 aa14.64□□□□□ -0.07
CLK3-206ENST00000562078 LINGO3P0C6S8 592 aa14.64□□□□□ -0.07
CLK3-206ENST00000562078 MYBL1P10243 752 aa14.64□□□□□ -0.07
CLK3-206ENST00000562078 CD44P16070 742 aaKnown RBP14.64□□□□□ -0.07
CLK3-206ENST00000562078 DPEP1P16444 411 aa14.64□□□□□ -0.07
CLK3-206ENST00000562078 GRIN1Q05586 938 aa14.64□□□□□ -0.07
CLK3-206ENST00000562078 RPUSD2Q8IZ73 545 aaKnown RBP14.64□□□□□ -0.07
CLK3-206ENST00000562078 TTLL6Q8N841 843 aa14.64□□□□□ -0.07
CLK3-206ENST00000562078 EHBP1Q8NDI1 1231 aa14.64□□□□□ -0.07
CLK3-206ENST00000562078 PSMD1Q99460 953 aa14.64□□□□□ -0.07
CLK3-206ENST00000562078 EIF4ENIF1Q9NRA8 985 aaKnown RBP14.64□□□□□ -0.07
CLK3-206ENST00000562078 SMARCAL1Q9NZC9 954 aa14.64□□□□□ -0.07
CLK3-206ENST00000562078 PPP1R1BQ9UD71 204 aaPredicted RBP14.64□□□□□ -0.07
CLK3-206ENST00000562078 CORO1CQ9ULV4 474 aaPredicted RBP14.64□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 224.6 ms