RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 RNPC3Q96LT9 517 aaKnown RBP18■□□□□ 0.47
VPS39-203ENST00000561797 SPATA33Q96N06 139 aa18■□□□□ 0.47
VPS39-203ENST00000561797 ALG1Q9BT22 464 aa18■□□□□ 0.47
VPS39-203ENST00000561797 NOC4LQ9BVI4 516 aaKnown RBP18■□□□□ 0.47
VPS39-203ENST00000561797 BCAS3Q9H6U6 928 aa18■□□□□ 0.47
VPS39-203ENST00000561797 MLXIPQ9HAP2 919 aa18■□□□□ 0.47
VPS39-203ENST00000561797 TANC1Q9C0D5 1861 aa18■□□□□ 0.47
VPS39-203ENST00000561797 EPB41L2O43491 1005 aaKnown RBP17.99■□□□□ 0.47
VPS39-203ENST00000561797 STAM2O75886 525 aa17.99■□□□□ 0.47
VPS39-203ENST00000561797 ZNF286BP0CG31 522 aa17.99■□□□□ 0.47
VPS39-203ENST00000561797 RCAN1P53805 252 aa17.99■□□□□ 0.47
VPS39-203ENST00000561797 HSDL1Q3SXM5 330 aa17.99■□□□□ 0.47
VPS39-203ENST00000561797 RUFY3Q7L099 469 aa17.99■□□□□ 0.47
VPS39-203ENST00000561797 Q7L0L9 218 aa17.99■□□□□ 0.47
VPS39-203ENST00000561797 INPP4AQ96PE3 977 aaPredicted RBP17.99■□□□□ 0.47
VPS39-203ENST00000561797 BUD13Q9BRD0 619 aaKnown RBP eCLIP17.99■□□□□ 0.47
VPS39-203ENST00000561797 PCDHA6Q9UN73 950 aa17.99■□□□□ 0.47
VPS39-203ENST00000561797 PCDHA8Q9Y5H6 950 aa17.99■□□□□ 0.47
VPS39-203ENST00000561797 CCDC196A0A1B0GTZ2 297 aa17.98■□□□□ 0.47
VPS39-203ENST00000561797 SPDYE3A6NKU9 549 aa17.98■□□□□ 0.47
VPS39-203ENST00000561797 SPATA31C2B4DYI2 1134 aa17.98■□□□□ 0.47
VPS39-203ENST00000561797 PSEN2P49810 448 aa17.98■□□□□ 0.47
VPS39-203ENST00000561797 PTPN11Q06124 597 aaPredicted RBP17.98■□□□□ 0.47
VPS39-203ENST00000561797 SEMA3FQ13275 785 aa17.98■□□□□ 0.47
VPS39-203ENST00000561797 TYW1BQ6NUM6 668 aa17.98■□□□□ 0.47
VPS39-203ENST00000561797 C16orf59Q7L2K0 433 aa17.98■□□□□ 0.47
VPS39-203ENST00000561797 DEFB123Q8N688 67 aa17.98■□□□□ 0.47
VPS39-203ENST00000561797 SCLYQ96I15 445 aa17.98■□□□□ 0.47
VPS39-203ENST00000561797 AGXT2Q9BYV1 514 aa17.98■□□□□ 0.47
VPS39-203ENST00000561797 NOD1Q9Y239 953 aa17.98■□□□□ 0.47
VPS39-203ENST00000561797 STXBP3O00186 592 aa17.97■□□□□ 0.47
VPS39-203ENST00000561797 FIBPO43427 364 aa17.97■□□□□ 0.47
VPS39-203ENST00000561797 ICAM3P32942 547 aa17.97■□□□□ 0.47
VPS39-203ENST00000561797 ADCY7P51828 1080 aa17.97■□□□□ 0.47
VPS39-203ENST00000561797 MFSD10Q14728 455 aa17.97■□□□□ 0.47
VPS39-203ENST00000561797 TMEM240Q5SV17 173 aa17.97■□□□□ 0.47
VPS39-203ENST00000561797 GPR153Q6NV75 609 aa17.97■□□□□ 0.47
VPS39-203ENST00000561797 XRRA1Q6P2D8 792 aa17.97■□□□□ 0.47
VPS39-203ENST00000561797 ZNF365Q70YC5 407 aa17.97■□□□□ 0.47
VPS39-203ENST00000561797 CYFIP1Q7L576 1253 aa17.97■□□□□ 0.47
VPS39-203ENST00000561797 NLRX1Q86UT6 975 aa17.97■□□□□ 0.47
VPS39-203ENST00000561797 FBXL16Q8N461 479 aa17.97■□□□□ 0.47
VPS39-203ENST00000561797 WNT8AQ9H1J5 351 aa17.97■□□□□ 0.47
VPS39-203ENST00000561797 ZSWIM6Q9HCJ5 1215 aa17.97■□□□□ 0.47
VPS39-203ENST00000561797 IL23AQ9NPF7 189 aa17.97■□□□□ 0.47
VPS39-203ENST00000561797 CYP46A1Q9Y6A2 500 aa17.97■□□□□ 0.47
VPS39-203ENST00000561797 SMCO2A6NFE2 343 aa17.96■□□□□ 0.47
VPS39-203ENST00000561797 PPFIA3O75145 1194 aa17.96■□□□□ 0.47
VPS39-203ENST00000561797 PPFIA4O75335 1185 aa17.96■□□□□ 0.47
VPS39-203ENST00000561797 CCT2P78371 535 aaKnown RBP17.96■□□□□ 0.47
VPS39-203ENST00000561797 NEDD9Q14511 834 aa17.96■□□□□ 0.47
VPS39-203ENST00000561797 PTGISQ16647 500 aa17.96■□□□□ 0.47
VPS39-203ENST00000561797 KIAA0753Q2KHM9 967 aa17.96■□□□□ 0.47
VPS39-203ENST00000561797 GDF6Q6KF10 455 aaPredicted RBP17.96■□□□□ 0.47
VPS39-203ENST00000561797 PPP1R18Q6NYC8 613 aa17.96■□□□□ 0.47
VPS39-203ENST00000561797 C7orf31Q8N865 590 aa17.96■□□□□ 0.47
VPS39-203ENST00000561797 PGBD1Q96JS3 809 aa17.96■□□□□ 0.47
VPS39-203ENST00000561797 LARP6Q9BRS8 491 aaKnown RBP17.96■□□□□ 0.47
VPS39-203ENST00000561797 KATNAL1Q9BW62 490 aa17.96■□□□□ 0.47
VPS39-203ENST00000561797 UPF3BQ9BZI7 483 aaKnown RBP17.96■□□□□ 0.47
VPS39-203ENST00000561797 EHMT1Q9H9B1 1298 aa17.96■□□□□ 0.47
VPS39-203ENST00000561797 RIC8AQ9NPQ8 531 aa17.96■□□□□ 0.47
VPS39-203ENST00000561797 BARHL2Q9NY43 387 aa17.96■□□□□ 0.47
VPS39-203ENST00000561797 HDAC6Q9UBN7 1215 aa17.96■□□□□ 0.47
VPS39-203ENST00000561797 hCG_1984214I3L0E3 225 aa17.95■□□□□ 0.46
VPS39-203ENST00000561797 NOP56O00567 594 aaKnown RBP17.95■□□□□ 0.46
VPS39-203ENST00000561797 HOXD8P13378 290 aaPredicted RBP17.95■□□□□ 0.46
VPS39-203ENST00000561797 SCG2P13521 617 aa17.95■□□□□ 0.46
VPS39-203ENST00000561797 SP4Q02446 784 aa17.95■□□□□ 0.46
VPS39-203ENST00000561797 TOB2Q14106 344 aaPredicted RBP17.95■□□□□ 0.46
VPS39-203ENST00000561797 PFKFB3Q16875 520 aaPredicted RBP17.95■□□□□ 0.46
VPS39-203ENST00000561797 ZNF713Q8N859 430 aaPredicted RBP17.95■□□□□ 0.46
VPS39-203ENST00000561797 PHKBQ93100 1093 aa17.95■□□□□ 0.46
VPS39-203ENST00000561797 NCOA5Q9HCD5 579 aaKnown RBP17.95■□□□□ 0.46
VPS39-203ENST00000561797 TMEM260Q9NX78 707 aa17.95■□□□□ 0.46
VPS39-203ENST00000561797 NID2Q14112 1375 aa17.94■□□□□ 0.46
VPS39-203ENST00000561797 HAS3O00219 553 aa17.94■□□□□ 0.46
VPS39-203ENST00000561797 PRPF3O43395 683 aaKnown RBP17.94■□□□□ 0.46
VPS39-203ENST00000561797 F2P00734 622 aa17.94■□□□□ 0.46
VPS39-203ENST00000561797 FGBP02675 491 aa17.94■□□□□ 0.46
VPS39-203ENST00000561797 PDIA3P30101 505 aaKnown RBP17.94■□□□□ 0.46
VPS39-203ENST00000561797 PSRC1Q6PGN9 363 aaPredicted RBP17.94■□□□□ 0.46
VPS39-203ENST00000561797 METTL7BQ6UX53 244 aa17.94■□□□□ 0.46
VPS39-203ENST00000561797 SESTD1Q86VW0 696 aa17.94■□□□□ 0.46
VPS39-203ENST00000561797 RETREG2Q8NC44 543 aa17.94■□□□□ 0.46
VPS39-203ENST00000561797 TET1Q8NFU7 2136 aa17.94■□□□□ 0.46
VPS39-203ENST00000561797 GPRASP2Q96D09 838 aa17.94■□□□□ 0.46
VPS39-203ENST00000561797 FAM161BQ96MY7 647 aa17.94■□□□□ 0.46
VPS39-203ENST00000561797 TM6SF1Q9BZW5 370 aa17.94■□□□□ 0.46
VPS39-203ENST00000561797 PKD2L1Q9P0L9 805 aa17.94■□□□□ 0.46
VPS39-203ENST00000561797 TELO2Q9Y4R8 837 aa17.94■□□□□ 0.46
VPS39-203ENST00000561797 UBIAD1Q9Y5Z9 338 aa17.94■□□□□ 0.46
VPS39-203ENST00000561797 ATP9AO75110 1047 aa17.93■□□□□ 0.46
VPS39-203ENST00000561797 LGALS2P05162 132 aa17.93■□□□□ 0.46
VPS39-203ENST00000561797 ITGB5P18084 799 aa17.93■□□□□ 0.46
VPS39-203ENST00000561797 EVCP57679 992 aa17.93■□□□□ 0.46
VPS39-203ENST00000561797 SMAD3P84022 425 aaKnown RBP17.93■□□□□ 0.46
VPS39-203ENST00000561797 AKAP17AQ02040 695 aaKnown RBP17.93■□□□□ 0.46
VPS39-203ENST00000561797 BFSP2Q13515 415 aa17.93■□□□□ 0.46
VPS39-203ENST00000561797 PKN1Q16512 942 aa17.93■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms