RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 SENP7Q9BQF6 1050 aa10.47□□□□□ -0.73
LDLR-210ENST00000559340 SDF4Q9BRK5 362 aa10.47□□□□□ -0.73
LDLR-210ENST00000559340 SPC25Q9HBM1 224 aa10.47□□□□□ -0.73
LDLR-210ENST00000559340 RTEL1Q9NZ71 1219 aa10.47□□□□□ -0.73
LDLR-210ENST00000559340 FLRT1Q9NZU1 646 aa10.47□□□□□ -0.73
LDLR-210ENST00000559340 DDX25Q9UHL0 483 aaKnown RBP10.47□□□□□ -0.73
LDLR-210ENST00000559340 CFAP45Q9UL16 551 aa10.47□□□□□ -0.73
LDLR-210ENST00000559340 Q9Y3F1 56 aa10.47□□□□□ -0.73
LDLR-210ENST00000559340 MRVI1Q9Y6F6 885 aa10.47□□□□□ -0.73
LDLR-210ENST00000559340 LRRC37A2A6NM11 1700 aa10.47□□□□□ -0.73
LDLR-210ENST00000559340 SPATA31C2B4DYI2 1134 aa10.46□□□□□ -0.73
LDLR-210ENST00000559340 KIF28PB7ZC32 967 aa10.46□□□□□ -0.73
LDLR-210ENST00000559340 LAD1O00515 517 aa10.46□□□□□ -0.73
LDLR-210ENST00000559340 ADAMTS3O15072 1205 aa10.46□□□□□ -0.73
LDLR-210ENST00000559340 SEPT4O43236 478 aa10.46□□□□□ -0.73
LDLR-210ENST00000559340 ZNF865P0CJ78 1059 aaPredicted RBP10.46□□□□□ -0.73
LDLR-210ENST00000559340 TXNP10599 105 aaKnown RBP10.46□□□□□ -0.73
LDLR-210ENST00000559340 TNFAIP2Q03169 654 aa10.46□□□□□ -0.73
LDLR-210ENST00000559340 RESTQ13127 1097 aa10.46□□□□□ -0.73
LDLR-210ENST00000559340 CCDC144BQ3MJ40 725 aa10.46□□□□□ -0.73
LDLR-210ENST00000559340 PRR16Q569H4 304 aa10.46□□□□□ -0.73
LDLR-210ENST00000559340 MAP3K21Q5TCX8 1036 aa10.46□□□□□ -0.73
LDLR-210ENST00000559340 MYSM1Q5VVJ2 828 aa10.46□□□□□ -0.73
LDLR-210ENST00000559340 EEPD1Q7L9B9 569 aa10.46□□□□□ -0.73
LDLR-210ENST00000559340 FBXO16Q8IX29 292 aaPredicted RBP10.46□□□□□ -0.73
LDLR-210ENST00000559340 SLFN12Q8IYM2 578 aa10.46□□□□□ -0.73
LDLR-210ENST00000559340 IL31RAQ8NI17 732 aa10.46□□□□□ -0.73
LDLR-210ENST00000559340 MBOAT7Q96N66 472 aa10.46□□□□□ -0.73
LDLR-210ENST00000559340 WDR11Q9BZH6 1224 aa10.46□□□□□ -0.73
LDLR-210ENST00000559340 AP5M1Q9H0R1 490 aa10.46□□□□□ -0.73
LDLR-210ENST00000559340 TBC1D22BQ9NU19 505 aa10.46□□□□□ -0.73
LDLR-210ENST00000559340 ASTN1O14525 1302 aa10.46□□□□□ -0.73
LDLR-210ENST00000559340 NFASCO94856 1347 aa10.45□□□□□ -0.74
LDLR-210ENST00000559340 ZEB2O60315 1214 aa10.45□□□□□ -0.74
LDLR-210ENST00000559340 NEMFO60524 1076 aa10.45□□□□□ -0.74
LDLR-210ENST00000559340 DUSP11O75319 330 aaKnown RBP10.45□□□□□ -0.74
LDLR-210ENST00000559340 GH1P01241 217 aa10.45□□□□□ -0.74
LDLR-210ENST00000559340 RARBP10826 455 aa10.45□□□□□ -0.74
LDLR-210ENST00000559340 CYBAP13498 195 aa10.45□□□□□ -0.74
LDLR-210ENST00000559340 ITGB5P18084 799 aa10.45□□□□□ -0.74
LDLR-210ENST00000559340 MCM7P33993 719 aa10.45□□□□□ -0.74
LDLR-210ENST00000559340 LAMC2Q13753 1193 aa10.45□□□□□ -0.74
LDLR-210ENST00000559340 ZNF174Q15697 407 aa10.45□□□□□ -0.74
LDLR-210ENST00000559340 CALCRLQ16602 461 aa10.45□□□□□ -0.74
LDLR-210ENST00000559340 DUSP28Q4G0W2 176 aa10.45□□□□□ -0.74
LDLR-210ENST00000559340 EARS2Q5JPH6 523 aaKnown RBP10.45□□□□□ -0.74
LDLR-210ENST00000559340 PRAMEF19Q5SWL8 479 aa10.45□□□□□ -0.74
LDLR-210ENST00000559340 TAPT1Q6NXT6 567 aa10.45□□□□□ -0.74
LDLR-210ENST00000559340 DHX37Q8IY37 1157 aaKnown RBP10.45□□□□□ -0.74
LDLR-210ENST00000559340 ARMC5Q96C12 935 aa10.45□□□□□ -0.74
LDLR-210ENST00000559340 ZNF577Q9BSK1 485 aa10.45□□□□□ -0.74
LDLR-210ENST00000559340 TMEM106CQ9BVX2 250 aa10.45□□□□□ -0.74
LDLR-210ENST00000559340 RAB34Q9BZG1 259 aa10.45□□□□□ -0.74
LDLR-210ENST00000559340 KATNBL1Q9H079 304 aa10.45□□□□□ -0.74
LDLR-210ENST00000559340 MLXIPQ9HAP2 919 aa10.45□□□□□ -0.74
LDLR-210ENST00000559340 KCNH7Q9NS40 1196 aa10.45□□□□□ -0.74
LDLR-210ENST00000559340 DDX41Q9UJV9 622 aaKnown RBP10.45□□□□□ -0.74
LDLR-210ENST00000559340 FAM205CA6NFA0 338 aa10.44□□□□□ -0.74
LDLR-210ENST00000559340 FAM86B1E9PN63 330 aa10.44□□□□□ -0.74
LDLR-210ENST00000559340 IPO5O00410 1097 aaKnown RBP10.44□□□□□ -0.74
LDLR-210ENST00000559340 TDP2O95551 362 aa10.44□□□□□ -0.74
LDLR-210ENST00000559340 FAM86B2P0C5J1 330 aa10.44□□□□□ -0.74
LDLR-210ENST00000559340 TMEM266Q2M3C6 531 aa10.44□□□□□ -0.74
LDLR-210ENST00000559340 FOXD4L5Q5VV16 416 aaPredicted RBP10.44□□□□□ -0.74
LDLR-210ENST00000559340 CCDC62Q6P9F0 684 aa10.44□□□□□ -0.74
LDLR-210ENST00000559340 SH3TC2Q8TF17 1288 aa10.44□□□□□ -0.74
LDLR-210ENST00000559340 FOXD4L4Q8WXT5 416 aaPredicted RBP10.44□□□□□ -0.74
LDLR-210ENST00000559340 RIT2Q99578 217 aa10.44□□□□□ -0.74
LDLR-210ENST00000559340 TEKT3Q9BXF9 490 aa10.44□□□□□ -0.74
LDLR-210ENST00000559340 AGO4Q9HCK5 861 aaKnown RBP10.44□□□□□ -0.74
LDLR-210ENST00000559340 PDGFCQ9NRA1 345 aa10.44□□□□□ -0.74
LDLR-210ENST00000559340 EIF4ENIF1Q9NRA8 985 aaKnown RBP10.44□□□□□ -0.74
LDLR-210ENST00000559340 DDX20Q9UHI6 824 aaKnown RBP10.44□□□□□ -0.74
LDLR-210ENST00000559340 STK24Q9Y6E0 443 aa10.44□□□□□ -0.74
LDLR-210ENST00000559340 FRMPD3Q5JV73 1810 aa10.43□□□□□ -0.74
LDLR-210ENST00000559340 IGLV3-22A0A075B6J6 115 aa10.43□□□□□ -0.74
LDLR-210ENST00000559340 KPNA6O60684 536 aa10.43□□□□□ -0.74
LDLR-210ENST00000559340 GAS7O60861 476 aa10.43□□□□□ -0.74
LDLR-210ENST00000559340 RGS20O76081 388 aa10.43□□□□□ -0.74
LDLR-210ENST00000559340 OR52Z1P0C646 297 aa10.43□□□□□ -0.74
LDLR-210ENST00000559340 ARP10275 920 aa10.43□□□□□ -0.74
LDLR-210ENST00000559340 DDIT3P35638 169 aa10.43□□□□□ -0.74
LDLR-210ENST00000559340 PRPHP41219 470 aa10.43□□□□□ -0.74
LDLR-210ENST00000559340 ADCYAP1R1P41586 468 aa10.43□□□□□ -0.74
LDLR-210ENST00000559340 TOB1P50616 345 aaPredicted RBP10.43□□□□□ -0.74
LDLR-210ENST00000559340 KRT85P78386 507 aa10.43□□□□□ -0.74
LDLR-210ENST00000559340 KRT76Q01546 638 aa10.43□□□□□ -0.74
LDLR-210ENST00000559340 STK38Q15208 465 aa10.43□□□□□ -0.74
LDLR-210ENST00000559340 SF3A1Q15459 793 aaKnown RBP10.43□□□□□ -0.74
LDLR-210ENST00000559340 CSPP1Q1MSJ5 1256 aa10.43□□□□□ -0.74
LDLR-210ENST00000559340 CELF3Q5SZQ8 465 aaKnown RBP10.43□□□□□ -0.74
LDLR-210ENST00000559340 LRCH2Q5VUJ6 765 aa10.43□□□□□ -0.74
LDLR-210ENST00000559340 ANO1Q5XXA6 986 aa10.43□□□□□ -0.74
LDLR-210ENST00000559340 ARL6IP4Q66PJ3 421 aaKnown RBP10.43□□□□□ -0.74
LDLR-210ENST00000559340 METTL7BQ6UX53 244 aa10.43□□□□□ -0.74
LDLR-210ENST00000559340 ARRDC4Q8NCT1 418 aa10.43□□□□□ -0.74
LDLR-210ENST00000559340 OR6J1Q8NGC5 347 aa10.43□□□□□ -0.74
LDLR-210ENST00000559340 CYP2W1Q8TAV3 490 aa10.43□□□□□ -0.74
LDLR-210ENST00000559340 SLC5A5Q92911 643 aa10.43□□□□□ -0.74
LDLR-210ENST00000559340 ZFP91Q96JP5 570 aaPredicted RBP10.43□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms