RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 HSP90B2PQ58FF3 399 aa14.29□□□□□ -0.12
LDLR-207ENST00000558013 C15orf52Q6ZUT6 534 aaKnown RBP14.29□□□□□ -0.12
LDLR-207ENST00000558013 USP21Q9UK80 565 aa14.29□□□□□ -0.12
LDLR-207ENST00000558013 KIAA1024Q9UPX6 916 aa14.29□□□□□ -0.12
LDLR-207ENST00000558013 POTEB3A0JP26 581 aa14.28□□□□□ -0.12
LDLR-207ENST00000558013 POTECB2RU33 542 aa14.28□□□□□ -0.12
LDLR-207ENST00000558013 ANKRD65E5RJM6 399 aa14.28□□□□□ -0.12
LDLR-207ENST00000558013 PLCG2P16885 1265 aa14.28□□□□□ -0.12
LDLR-207ENST00000558013 DDR1Q08345 913 aa14.28□□□□□ -0.12
LDLR-207ENST00000558013 EHHADHQ08426 723 aa14.28□□□□□ -0.12
LDLR-207ENST00000558013 FIGNQ5HY92 759 aa14.28□□□□□ -0.12
LDLR-207ENST00000558013 POTEBQ6S5H4 581 aa14.28□□□□□ -0.12
LDLR-207ENST00000558013 FAM163AQ96GL9 167 aaPredicted RBP14.28□□□□□ -0.12
LDLR-207ENST00000558013 ZHX3Q9H4I2 956 aa14.28□□□□□ -0.12
LDLR-207ENST00000558013 STK17AQ9UEE5 414 aa14.28□□□□□ -0.12
LDLR-207ENST00000558013 PVALEFA0A1B0GWK0 134 aa14.28□□□□□ -0.12
LDLR-207ENST00000558013 TDRD12Q587J7 1177 aaKnown RBP14.28□□□□□ -0.12
LDLR-207ENST00000558013 HGSNATQ68CP4 663 aa14.28□□□□□ -0.12
LDLR-207ENST00000558013 CCNI2Q6ZMN8 369 aaPredicted RBP14.28□□□□□ -0.12
LDLR-207ENST00000558013 ZNF662Q6ZS27 426 aa14.28□□□□□ -0.12
LDLR-207ENST00000558013 EHBP1Q8NDI1 1231 aa14.28□□□□□ -0.12
LDLR-207ENST00000558013 SELENOOQ9BVL4 669 aa14.28□□□□□ -0.12
LDLR-207ENST00000558013 TRIM34Q9BYJ4 488 aa14.28□□□□□ -0.12
LDLR-207ENST00000558013 GBP3Q9H0R5 595 aa14.28□□□□□ -0.12
LDLR-207ENST00000558013 USP40Q9NVE5 1235 aa14.28□□□□□ -0.12
LDLR-207ENST00000558013 NOL4O94818 638 aa14.28□□□□□ -0.12
LDLR-207ENST00000558013 SNHG28P0DPA3 235 aa14.28□□□□□ -0.12
LDLR-207ENST00000558013 HNRNPH3P31942 346 aaKnown RBP14.28□□□□□ -0.12
LDLR-207ENST00000558013 SHMT1P34896 483 aa14.28□□□□□ -0.12
LDLR-207ENST00000558013 MAGEA1P43355 309 aa14.28□□□□□ -0.12
LDLR-207ENST00000558013 TCP10Q12799 353 aa14.28□□□□□ -0.12
LDLR-207ENST00000558013 TMEM119Q4V9L6 283 aa14.28□□□□□ -0.12
LDLR-207ENST00000558013 CACNA2D4Q7Z3S7 1137 aa14.28□□□□□ -0.12
LDLR-207ENST00000558013 P2RX7Q99572 595 aaKnown RBP14.28□□□□□ -0.12
LDLR-207ENST00000558013 PANK4Q9NVE7 773 aa14.28□□□□□ -0.12
LDLR-207ENST00000558013 SERPINB13Q9UIV8 391 aa14.28□□□□□ -0.12
LDLR-207ENST00000558013 PCDHA12Q9UN75 941 aa14.28□□□□□ -0.12
LDLR-207ENST00000558013 PNMA6FA0A0J9YX94 578 aa14.27□□□□□ -0.12
LDLR-207ENST00000558013 AGPSO00116 658 aa14.27□□□□□ -0.12
LDLR-207ENST00000558013 TRIM66O15016 1216 aa14.27□□□□□ -0.12
LDLR-207ENST00000558013 NAP1L1P55209 391 aaKnown RBP14.27□□□□□ -0.12
LDLR-207ENST00000558013 RNASE9P60153 205 aaKnown RBP14.27□□□□□ -0.12
LDLR-207ENST00000558013 TUBB4BP68371 445 aa14.27□□□□□ -0.12
LDLR-207ENST00000558013 PTPROQ16827 1216 aa14.27□□□□□ -0.12
LDLR-207ENST00000558013 SLC30A10Q6XR72 485 aa14.27□□□□□ -0.12
LDLR-207ENST00000558013 OSBPL9Q96SU4 736 aa14.27□□□□□ -0.12
LDLR-207ENST00000558013 PSTPIP2Q9H939 334 aa14.27□□□□□ -0.12
LDLR-207ENST00000558013 RIC8AQ9NPQ8 531 aa14.27□□□□□ -0.12
LDLR-207ENST00000558013 PACSIN2Q9UNF0 486 aaPredicted RBP14.27□□□□□ -0.12
LDLR-207ENST00000558013 IGKV6D-41A0A0C4DH26 115 aa14.27□□□□□ -0.13
LDLR-207ENST00000558013 MEIS1O00470 390 aa14.27□□□□□ -0.13
LDLR-207ENST00000558013 TTLL1O95922 423 aa14.27□□□□□ -0.13
LDLR-207ENST00000558013 ACTN2P35609 894 aa14.27□□□□□ -0.13
LDLR-207ENST00000558013 POLR2FP61218 127 aaKnown RBP14.27□□□□□ -0.13
LDLR-207ENST00000558013 CDK17Q00537 523 aa14.27□□□□□ -0.13
LDLR-207ENST00000558013 PDIA5Q14554 519 aa14.27□□□□□ -0.13
LDLR-207ENST00000558013 ASPRV1Q53RT3 343 aa14.27□□□□□ -0.13
LDLR-207ENST00000558013 MYOCDQ8IZQ8 938 aa14.27□□□□□ -0.13
LDLR-207ENST00000558013 SPATA4Q8NEY3 305 aa14.27□□□□□ -0.13
LDLR-207ENST00000558013 JRKLQ9Y4A0 524 aa14.27□□□□□ -0.13
LDLR-207ENST00000558013 SMARCA1P28370 1054 aa14.26□□□□□ -0.13
LDLR-207ENST00000558013 CCDC40Q4G0X9 1142 aa14.26□□□□□ -0.13
LDLR-207ENST00000558013 ZCWPW2Q504Y3 356 aa14.26□□□□□ -0.13
LDLR-207ENST00000558013 TRIM58Q8NG06 486 aa14.26□□□□□ -0.13
LDLR-207ENST00000558013 RBM17Q96I25 401 aaKnown RBP14.26□□□□□ -0.13
LDLR-207ENST00000558013 RABEP2Q9H5N1 569 aa14.26□□□□□ -0.13
LDLR-207ENST00000558013 ANO9A1A5B4 782 aa14.26□□□□□ -0.13
LDLR-207ENST00000558013 ZSCAN5CA6NGD5 496 aaPredicted RBP14.26□□□□□ -0.13
LDLR-207ENST00000558013 USO1O60763 962 aaKnown RBP14.26□□□□□ -0.13
LDLR-207ENST00000558013 TACC1O75410 805 aa14.26□□□□□ -0.13
LDLR-207ENST00000558013 CLK2P49760 499 aaKnown RBP14.26□□□□□ -0.13
LDLR-207ENST00000558013 CASP5P51878 434 aa14.26□□□□□ -0.13
LDLR-207ENST00000558013 PSMC6P62333 389 aa14.26□□□□□ -0.13
LDLR-207ENST00000558013 ASTE1Q2TB18 679 aaPredicted RBP14.26□□□□□ -0.13
LDLR-207ENST00000558013 COBLL1Q53SF7 1204 aa14.26□□□□□ -0.13
LDLR-207ENST00000558013 FAM26FQ5R3K3 315 aa14.26□□□□□ -0.13
LDLR-207ENST00000558013 PDXDC1Q6P996 788 aa14.26□□□□□ -0.13
LDLR-207ENST00000558013 FAM71BQ8TC56 605 aa14.26□□□□□ -0.13
LDLR-207ENST00000558013 CERKQ8TCT0 537 aa14.26□□□□□ -0.13
LDLR-207ENST00000558013 TLR10Q9BXR5 811 aa14.26□□□□□ -0.13
LDLR-207ENST00000558013 PACSIN1Q9BY11 444 aa14.26□□□□□ -0.13
LDLR-207ENST00000558013 POTEFA5A3E0 1075 aa14.26□□□□□ -0.13
LDLR-207ENST00000558013 PRPF6O94906 941 aaKnown RBP14.26□□□□□ -0.13
LDLR-207ENST00000558013 POTEIP0CG38 1075 aa14.26□□□□□ -0.13
LDLR-207ENST00000558013 CKAP4Q07065 602 aaKnown RBP14.26□□□□□ -0.13
LDLR-207ENST00000558013 SEMA3FQ13275 785 aa14.26□□□□□ -0.13
LDLR-207ENST00000558013 MAPK8IP2Q13387 824 aaPredicted RBP14.26□□□□□ -0.13
LDLR-207ENST00000558013 HERC4Q5GLZ8 1057 aaPredicted RBP14.26□□□□□ -0.13
LDLR-207ENST00000558013 POTEGQ6S5H5 508 aa14.26□□□□□ -0.13
LDLR-207ENST00000558013 POTEEQ6S8J3 1075 aa14.26□□□□□ -0.13
LDLR-207ENST00000558013 CCDC84Q86UT8 332 aaPredicted RBP14.26□□□□□ -0.13
LDLR-207ENST00000558013 PSD3Q9NYI0 1048 aa14.26□□□□□ -0.13
LDLR-207ENST00000558013 FTCDO95954 541 aa14.25□□□□□ -0.13
LDLR-207ENST00000558013 ACTN1P12814 892 aa14.25□□□□□ -0.13
LDLR-207ENST00000558013 LRRC63Q05C16 580 aa14.25□□□□□ -0.13
LDLR-207ENST00000558013 FAM83BQ5T0W9 1011 aa14.25□□□□□ -0.13
LDLR-207ENST00000558013 CUL5Q93034 780 aa14.25□□□□□ -0.13
LDLR-207ENST00000558013 LSM14BQ9BX40 385 aaKnown RBP14.25□□□□□ -0.13
LDLR-207ENST00000558013 RAB34Q9BZG1 259 aa14.25□□□□□ -0.13
LDLR-207ENST00000558013 GOLPH3Q9H4A6 298 aa14.25□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms