RNA–Protein interactions for RNA: ENST00000557507.1

CCDC88C-214, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 429 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-214ENST00000557507 CSPP1Q1MSJ5 1256 aa9.58□□□□□ -0.88
CCDC88C-214ENST00000557507 EPC2Q52LR7 807 aa9.58□□□□□ -0.88
CCDC88C-214ENST00000557507 TIGD5Q53EQ6 642 aa9.58□□□□□ -0.88
CCDC88C-214ENST00000557507 TCEAL5Q5H9L2 206 aa9.58□□□□□ -0.88
CCDC88C-214ENST00000557507 TBC1D10CQ8IV04 446 aa9.58□□□□□ -0.88
CCDC88C-214ENST00000557507 RGS22Q8NE09 1264 aa9.58□□□□□ -0.88
CCDC88C-214ENST00000557507 DBF4BQ8NFT6 615 aa9.58□□□□□ -0.88
CCDC88C-214ENST00000557507 EMID1Q96A84 441 aaPredicted RBP9.58□□□□□ -0.88
CCDC88C-214ENST00000557507 FBXL18Q96ME1 805 aa9.58□□□□□ -0.88
CCDC88C-214ENST00000557507 KATNAL1Q9BW62 490 aa9.58□□□□□ -0.88
CCDC88C-214ENST00000557507 OSBPL7Q9BZF2 842 aa9.58□□□□□ -0.88
CCDC88C-214ENST00000557507 UBA5Q9GZZ9 404 aa9.58□□□□□ -0.88
CCDC88C-214ENST00000557507 DDX41Q9UJV9 622 aaKnown RBP9.58□□□□□ -0.88
CCDC88C-214ENST00000557507 RCAN3Q9UKA8 241 aa9.58□□□□□ -0.88
CCDC88C-214ENST00000557507 INSL6Q9Y581 213 aa9.58□□□□□ -0.88
CCDC88C-214ENST00000557507 ABCB11O95342 1321 aa9.57□□□□□ -0.88
CCDC88C-214ENST00000557507 ZMYM6O95789 1325 aa9.57□□□□□ -0.88
CCDC88C-214ENST00000557507 PLXNA3P51805 1871 aa9.57□□□□□ -0.88
CCDC88C-214ENST00000557507 FNDC1Q4ZHG4 1894 aaPredicted RBP9.57□□□□□ -0.88
CCDC88C-214ENST00000557507 MYO10Q9HD67 2058 aa9.57□□□□□ -0.88
CCDC88C-214ENST00000557507 POTEB3A0JP26 581 aa9.57□□□□□ -0.88
CCDC88C-214ENST00000557507 SORBS3O60504 671 aa9.57□□□□□ -0.88
CCDC88C-214ENST00000557507 FGAP02671 866 aa9.57□□□□□ -0.88
CCDC88C-214ENST00000557507 AMHP03971 560 aa9.57□□□□□ -0.88
CCDC88C-214ENST00000557507 HOXD8P13378 290 aaPredicted RBP9.57□□□□□ -0.88
CCDC88C-214ENST00000557507 EIF2AK2P19525 551 aaKnown RBP9.57□□□□□ -0.88
CCDC88C-214ENST00000557507 COL19A1Q14993 1142 aa9.57□□□□□ -0.88
CCDC88C-214ENST00000557507 POTEBQ6S5H4 581 aa9.57□□□□□ -0.88
CCDC88C-214ENST00000557507 SERINC5Q86VE9 423 aa9.57□□□□□ -0.88
CCDC88C-214ENST00000557507 BANK1Q8NDB2 785 aa9.57□□□□□ -0.88
CCDC88C-214ENST00000557507 PPTC7Q8NI37 304 aa9.57□□□□□ -0.88
CCDC88C-214ENST00000557507 NSUN6Q8TEA1 469 aaKnown RBP9.57□□□□□ -0.88
CCDC88C-214ENST00000557507 PABPC5Q96DU9 382 aaKnown RBP9.57□□□□□ -0.88
CCDC88C-214ENST00000557507 FAM227BQ96M60 508 aa9.57□□□□□ -0.88
CCDC88C-214ENST00000557507 RMDN3Q96TC7 470 aa9.57□□□□□ -0.88
CCDC88C-214ENST00000557507 USP34Q70CQ2 3546 aa9.57□□□□□ -0.88
CCDC88C-214ENST00000557507 FAM186AA6NE01 2351 aa9.57□□□□□ -0.88
CCDC88C-214ENST00000557507 NEDD4P46934 1319 aa9.56□□□□□ -0.88
CCDC88C-214ENST00000557507 EMSYQ7Z589 1322 aa9.56□□□□□ -0.88
CCDC88C-214ENST00000557507 RIF1Q5UIP0 2472 aaKnown RBP9.56□□□□□ -0.88
CCDC88C-214ENST00000557507 C19orf67A6NJJ6 358 aa9.56□□□□□ -0.88
CCDC88C-214ENST00000557507 H3BNC9 293 aa9.56□□□□□ -0.88
CCDC88C-214ENST00000557507 OPLAHO14841 1288 aa9.56□□□□□ -0.88
CCDC88C-214ENST00000557507 RGS20O76081 388 aa9.56□□□□□ -0.88
CCDC88C-214ENST00000557507 THPOP40225 353 aa9.56□□□□□ -0.88
CCDC88C-214ENST00000557507 GPM6BQ13491 265 aa9.56□□□□□ -0.88
CCDC88C-214ENST00000557507 STXBP2Q15833 593 aa9.56□□□□□ -0.88
CCDC88C-214ENST00000557507 PTPROQ16827 1216 aa9.56□□□□□ -0.88
CCDC88C-214ENST00000557507 QRICH1Q2TAL8 776 aa9.56□□□□□ -0.88
CCDC88C-214ENST00000557507 PUS10Q3MIT2 529 aaKnown RBP9.56□□□□□ -0.88
CCDC88C-214ENST00000557507 PLEKHG4Q58EX7 1191 aa9.56□□□□□ -0.88
CCDC88C-214ENST00000557507 GPATCH4Q5T3I0 446 aaKnown RBP9.56□□□□□ -0.88
CCDC88C-214ENST00000557507 EP400NLQ6ZTU2 488 aa9.56□□□□□ -0.88
CCDC88C-214ENST00000557507 HFE2Q6ZVN8 426 aa9.56□□□□□ -0.88
CCDC88C-214ENST00000557507 ZNF589Q86UQ0 364 aaPredicted RBP9.56□□□□□ -0.88
CCDC88C-214ENST00000557507 FBXO11Q86XK2 927 aa9.56□□□□□ -0.88
CCDC88C-214ENST00000557507 IWS1Q96ST2 819 aa9.56□□□□□ -0.88
CCDC88C-214ENST00000557507 ZKSCAN3Q9BRR0 538 aa9.56□□□□□ -0.88
CCDC88C-214ENST00000557507 PXMP2Q9NR77 195 aa9.56□□□□□ -0.88
CCDC88C-214ENST00000557507 MRVI1Q9Y6F6 885 aa9.56□□□□□ -0.88
CCDC88C-214ENST00000557507 EVPLQ92817 2033 aa9.56□□□□□ -0.88
CCDC88C-214ENST00000557507 WDR81Q562E7 1941 aa9.56□□□□□ -0.88
CCDC88C-214ENST00000557507 PTPRZ1P23471 2315 aaPredicted RBP9.55□□□□□ -0.88
CCDC88C-214ENST00000557507 LOC101059915A0A1B0GWI6 518 aaPredicted RBP9.55□□□□□ -0.88
CCDC88C-214ENST00000557507 RSPH10B2B2RC85 870 aa9.55□□□□□ -0.88
CCDC88C-214ENST00000557507 NR3C2P08235 984 aa9.55□□□□□ -0.88
CCDC88C-214ENST00000557507 RSPH10BP0C881 870 aa9.55□□□□□ -0.88
CCDC88C-214ENST00000557507 HSPD1P10809 573 aaKnown RBP9.55□□□□□ -0.88
CCDC88C-214ENST00000557507 HOXC8P31273 242 aa9.55□□□□□ -0.88
CCDC88C-214ENST00000557507 IRS1P35568 1242 aa9.55□□□□□ -0.88
CCDC88C-214ENST00000557507 LTBRP36941 435 aa9.55□□□□□ -0.88
CCDC88C-214ENST00000557507 LAMC2Q13753 1193 aa9.55□□□□□ -0.88
CCDC88C-214ENST00000557507 HSDL1Q3SXM5 330 aa9.55□□□□□ -0.88
CCDC88C-214ENST00000557507 ARHGEF16Q5VV41 709 aa9.55□□□□□ -0.88
CCDC88C-214ENST00000557507 RPAINQ86UA6 219 aa9.55□□□□□ -0.88
CCDC88C-214ENST00000557507 ADHFE1Q8IWW8 467 aa9.55□□□□□ -0.88
CCDC88C-214ENST00000557507 DHX37Q8IY37 1157 aaKnown RBP9.55□□□□□ -0.88
CCDC88C-214ENST00000557507 TMEM192Q8IY95 271 aa9.55□□□□□ -0.88
CCDC88C-214ENST00000557507 ADGRF4Q8IZF3 695 aa9.55□□□□□ -0.88
CCDC88C-214ENST00000557507 IL31RAQ8NI17 732 aa9.55□□□□□ -0.88
CCDC88C-214ENST00000557507 TTC14Q96N46 770 aa9.55□□□□□ -0.88
CCDC88C-214ENST00000557507 SAMD11Q96NU1 681 aa9.55□□□□□ -0.88
CCDC88C-214ENST00000557507 YME1L1Q96TA2 773 aa9.55□□□□□ -0.88
CCDC88C-214ENST00000557507 PHOX2BQ99453 314 aa9.55□□□□□ -0.88
CCDC88C-214ENST00000557507 C16orf70Q9BSU1 422 aa9.55□□□□□ -0.88
CCDC88C-214ENST00000557507 NSUN3Q9H649 340 aaKnown RBP9.55□□□□□ -0.88
CCDC88C-214ENST00000557507 HELLSQ9NRZ9 838 aa9.55□□□□□ -0.88
CCDC88C-214ENST00000557507 CLDND1Q9NY35 253 aa9.55□□□□□ -0.88
CCDC88C-214ENST00000557507 PRKAG3Q9UGI9 489 aa9.55□□□□□ -0.88
CCDC88C-214ENST00000557507 CTNNA3Q9UI47 895 aa9.55□□□□□ -0.88
CCDC88C-214ENST00000557507 SUPT16HQ9Y5B9 1047 aaKnown RBP9.55□□□□□ -0.88
CCDC88C-214ENST00000557507 PCDHB15Q9Y5E8 787 aa9.55□□□□□ -0.88
CCDC88C-214ENST00000557507 CFAP54Q96N23 3096 aa9.54□□□□□ -0.88
CCDC88C-214ENST00000557507 EIF3JO75822 258 aaKnown RBP9.54□□□□□ -0.88
CCDC88C-214ENST00000557507 UPP2O95045 317 aa9.54□□□□□ -0.88
CCDC88C-214ENST00000557507 GGPS1O95749 300 aa9.54□□□□□ -0.88
CCDC88C-214ENST00000557507 CTSHP09668 335 aa9.54□□□□□ -0.88
CCDC88C-214ENST00000557507 LINC00271P0C7V0 271 aa9.54□□□□□ -0.88
CCDC88C-214ENST00000557507 UBA1P22314 1058 aaKnown RBP9.54□□□□□ -0.88
CCDC88C-214ENST00000557507 DLX2Q07687 328 aaPredicted RBP9.54□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms