RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 NELFBQ8WX92 580 aa14.1□□□□□ -0.15
SHMT2-229ENST00000557348 BBXQ8WY36 941 aaPredicted RBP14.1□□□□□ -0.15
SHMT2-229ENST00000557348 PNMA5Q96PV4 448 aa14.1□□□□□ -0.15
SHMT2-229ENST00000557348 ARID3AQ99856 593 aa14.1□□□□□ -0.15
SHMT2-229ENST00000557348 TANGO6Q9C0B7 1094 aa14.1□□□□□ -0.15
SHMT2-229ENST00000557348 THAP9Q9H5L6 903 aa14.1□□□□□ -0.15
SHMT2-229ENST00000557348 SLC38A10Q9HBR0 1119 aa14.1□□□□□ -0.15
SHMT2-229ENST00000557348 BLOC1S4Q9NUP1 217 aa14.1□□□□□ -0.15
SHMT2-229ENST00000557348 V9GYY5 206 aaPredicted RBP14.1□□□□□ -0.15
SHMT2-229ENST00000557348 A0A1B0GTH6 734 aa14.1□□□□□ -0.15
SHMT2-229ENST00000557348 TULP2O00295 520 aa14.1□□□□□ -0.15
SHMT2-229ENST00000557348 FGFR1OPO95684 399 aaKnown RBP14.1□□□□□ -0.15
SHMT2-229ENST00000557348 PTPRAP18433 802 aa14.1□□□□□ -0.15
SHMT2-229ENST00000557348 VCAM1P19320 739 aa14.1□□□□□ -0.15
SHMT2-229ENST00000557348 EEF1GP26641 437 aaKnown RBP14.1□□□□□ -0.15
SHMT2-229ENST00000557348 C17orf53Q8N3J3 647 aaPredicted RBP14.1□□□□□ -0.15
SHMT2-229ENST00000557348 GLIS2Q9BZE0 524 aaPredicted RBP14.1□□□□□ -0.15
SHMT2-229ENST00000557348 WDR11Q9BZH6 1224 aa14.1□□□□□ -0.15
SHMT2-229ENST00000557348 L2HGDHQ9H9P8 463 aa14.1□□□□□ -0.15
SHMT2-229ENST00000557348 ARGLU1Q9NWB6 273 aaPredicted RBP14.1□□□□□ -0.15
SHMT2-229ENST00000557348 NRBP1Q9UHY1 535 aa14.1□□□□□ -0.15
SHMT2-229ENST00000557348 FLOT1O75955 427 aa14.09□□□□□ -0.15
SHMT2-229ENST00000557348 YY1P25490 414 aa14.09□□□□□ -0.15
SHMT2-229ENST00000557348 RPA1P27694 616 aa14.09□□□□□ -0.15
SHMT2-229ENST00000557348 HOXA13P31271 388 aaPredicted RBP14.09□□□□□ -0.15
SHMT2-229ENST00000557348 PRCPP42785 496 aa14.09□□□□□ -0.15
SHMT2-229ENST00000557348 MTMR2Q13614 643 aa14.09□□□□□ -0.15
SHMT2-229ENST00000557348 CCDC144BQ3MJ40 725 aa14.09□□□□□ -0.15
SHMT2-229ENST00000557348 SPECC1LQ69YQ0 1117 aa14.09□□□□□ -0.15
SHMT2-229ENST00000557348 TRPM4Q8TD43 1214 aa14.09□□□□□ -0.15
SHMT2-229ENST00000557348 CACTINQ8WUQ7 758 aaKnown RBP14.09□□□□□ -0.15
SHMT2-229ENST00000557348 LENG9Q96B70 501 aa14.09□□□□□ -0.15
SHMT2-229ENST00000557348 C16orf45Q96MC5 204 aaPredicted RBP14.09□□□□□ -0.15
SHMT2-229ENST00000557348 PLIN2Q99541 437 aa14.09□□□□□ -0.15
SHMT2-229ENST00000557348 POLR3CQ9BUI4 534 aaPredicted RBP14.09□□□□□ -0.15
SHMT2-229ENST00000557348 TMEM51Q9NW97 253 aa14.09□□□□□ -0.15
SHMT2-229ENST00000557348 LIMA1Q9UHB6 759 aaKnown RBP14.09□□□□□ -0.15
SHMT2-229ENST00000557348 MYH7BA7E2Y1 1941 aa14.09□□□□□ -0.15
SHMT2-229ENST00000557348 ZC3H4Q9UPT8 1303 aaKnown RBP14.09□□□□□ -0.15
SHMT2-229ENST00000557348 LRRC10BA6NIK2 292 aa14.08□□□□□ -0.16
SHMT2-229ENST00000557348 BCRP11274 1271 aa14.08□□□□□ -0.16
SHMT2-229ENST00000557348 CCNE1P24864 410 aa14.08□□□□□ -0.16
SHMT2-229ENST00000557348 INPP5BP32019 993 aa14.08□□□□□ -0.16
SHMT2-229ENST00000557348 CEP55Q53EZ4 464 aa14.08□□□□□ -0.16
SHMT2-229ENST00000557348 FCHSD1Q86WN1 690 aa14.08□□□□□ -0.16
SHMT2-229ENST00000557348 NEK9Q8TD19 979 aa14.08□□□□□ -0.16
SHMT2-229ENST00000557348 DCPSQ96C86 337 aaKnown RBP14.08□□□□□ -0.16
SHMT2-229ENST00000557348 KLRG1Q96E93 195 aa14.08□□□□□ -0.16
SHMT2-229ENST00000557348 RPAP3Q9H6T3 665 aaPredicted RBP14.08□□□□□ -0.16
SHMT2-229ENST00000557348 SAMSN1Q9NSI8 373 aaKnown RBP14.08□□□□□ -0.16
SHMT2-229ENST00000557348 FBXO28Q9NVF7 368 aa14.08□□□□□ -0.16
SHMT2-229ENST00000557348 TMOD4Q9NZQ9 345 aa14.08□□□□□ -0.16
SHMT2-229ENST00000557348 MAGEC2Q9UBF1 373 aaPredicted RBP14.08□□□□□ -0.16
SHMT2-229ENST00000557348 ASTN2O75129 1339 aaPredicted RBP14.08□□□□□ -0.16
SHMT2-229ENST00000557348 IGLV3-22A0A075B6J6 115 aa14.07□□□□□ -0.16
SHMT2-229ENST00000557348 FAM86B1E9PN63 330 aa14.07□□□□□ -0.16
SHMT2-229ENST00000557348 MSH4O15457 936 aa14.07□□□□□ -0.16
SHMT2-229ENST00000557348 FAM86B2P0C5J1 330 aa14.07□□□□□ -0.16
SHMT2-229ENST00000557348 SKILP12757 684 aa14.07□□□□□ -0.16
SHMT2-229ENST00000557348 STX17P56962 302 aa14.07□□□□□ -0.16
SHMT2-229ENST00000557348 SPIRE1Q08AE8 756 aa14.07□□□□□ -0.16
SHMT2-229ENST00000557348 SPP2Q13103 211 aa14.07□□□□□ -0.16
SHMT2-229ENST00000557348 PPP2R5CQ13362 524 aa14.07□□□□□ -0.16
SHMT2-229ENST00000557348 TRIM14Q14142 442 aa14.07□□□□□ -0.16
SHMT2-229ENST00000557348 MCM6Q14566 821 aa14.07□□□□□ -0.16
SHMT2-229ENST00000557348 NR1I3Q14994 352 aa14.07□□□□□ -0.16
SHMT2-229ENST00000557348 TKFCQ3LXA3 575 aa14.07□□□□□ -0.16
SHMT2-229ENST00000557348 XRRA1Q6P2D8 792 aa14.07□□□□□ -0.16
SHMT2-229ENST00000557348 CCDC65Q8IXS2 484 aa14.07□□□□□ -0.16
SHMT2-229ENST00000557348 SMYD4Q8IYR2 804 aaPredicted RBP14.07□□□□□ -0.16
SHMT2-229ENST00000557348 GUF1Q8N442 669 aaKnown RBP14.07□□□□□ -0.16
SHMT2-229ENST00000557348 MED15Q96RN5 788 aa14.07□□□□□ -0.16
SHMT2-229ENST00000557348 TUFT1Q9NNX1 390 aa14.07□□□□□ -0.16
SHMT2-229ENST00000557348 EMILIN3Q9NT22 766 aa14.07□□□□□ -0.16
SHMT2-229ENST00000557348 FRMD4AQ9P2Q2 1039 aaPredicted RBP14.07□□□□□ -0.16
SHMT2-229ENST00000557348 DNM3Q9UQ16 869 aa14.07□□□□□ -0.16
SHMT2-229ENST00000557348 GDAQ9Y2T3 454 aa14.07□□□□□ -0.16
SHMT2-229ENST00000557348 ZNF536O15090 1300 aa14.07□□□□□ -0.16
SHMT2-229ENST00000557348 ITIH6Q6UXX5 1313 aa14.07□□□□□ -0.16
SHMT2-229ENST00000557348 RPTORQ8N122 1335 aa14.07□□□□□ -0.16
SHMT2-229ENST00000557348 MYMKA6NI61 221 aa14.07□□□□□ -0.16
SHMT2-229ENST00000557348 H2AFXP16104 143 aaPredicted RBP14.07□□□□□ -0.16
SHMT2-229ENST00000557348 LRRC63Q05C16 580 aa14.07□□□□□ -0.16
SHMT2-229ENST00000557348 DPY19L2Q6NUT2 758 aa14.07□□□□□ -0.16
SHMT2-229ENST00000557348 SULF1Q8IWU6 871 aa14.07□□□□□ -0.16
SHMT2-229ENST00000557348 IPO4Q8TEX9 1081 aaKnown RBP14.07□□□□□ -0.16
SHMT2-229ENST00000557348 DDX12PQ92771 950 aa14.07□□□□□ -0.16
SHMT2-229ENST00000557348 SLC5A5Q92911 643 aa14.07□□□□□ -0.16
SHMT2-229ENST00000557348 P2RX5Q93086 422 aa14.07□□□□□ -0.16
SHMT2-229ENST00000557348 TRIM47Q96LD4 638 aa14.07□□□□□ -0.16
SHMT2-229ENST00000557348 P2RX7Q99572 595 aaKnown RBP14.07□□□□□ -0.16
SHMT2-229ENST00000557348 RIT2Q99578 217 aa14.07□□□□□ -0.16
SHMT2-229ENST00000557348 RNF181Q9P0P0 153 aa14.07□□□□□ -0.16
SHMT2-229ENST00000557348 ADD3Q9UEY8 706 aaKnown RBP14.07□□□□□ -0.16
SHMT2-229ENST00000557348 FRMPD4Q14CM0 1322 aa14.06□□□□□ -0.16
SHMT2-229ENST00000557348 ATP2A1O14983 1001 aa14.06□□□□□ -0.16
SHMT2-229ENST00000557348 PPP1R12BO60237 982 aaPredicted RBP14.06□□□□□ -0.16
SHMT2-229ENST00000557348 CYP2C19P33261 490 aa14.06□□□□□ -0.16
SHMT2-229ENST00000557348 EPS15P42566 896 aa14.06□□□□□ -0.16
SHMT2-229ENST00000557348 TUBB4BP68371 445 aa14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms