RNA–Protein interactions for RNA: ENST00000557024.1

SYNE2-224, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 998 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-224ENST00000557024 CLEC4DQ8WXI8 215 aa10.98□□□□□ -0.65
SYNE2-224ENST00000557024 KAT2BQ92831 832 aa10.98□□□□□ -0.65
SYNE2-224ENST00000557024 RANBP17Q9H2T7 1088 aaKnown RBP10.98□□□□□ -0.65
SYNE2-224ENST00000557024 CLDND1Q9NY35 253 aa10.98□□□□□ -0.65
SYNE2-224ENST00000557024 TRIOO75962 3097 aa10.98□□□□□ -0.65
SYNE2-224ENST00000557024 SCN10AQ9Y5Y9 1956 aa10.97□□□□□ -0.65
SYNE2-224ENST00000557024 AMHP03971 560 aa10.97□□□□□ -0.65
SYNE2-224ENST00000557024 MMP3P08254 477 aa10.97□□□□□ -0.65
SYNE2-224ENST00000557024 GNAT2P19087 354 aa10.97□□□□□ -0.65
SYNE2-224ENST00000557024 EDNRBP24530 442 aa10.97□□□□□ -0.65
SYNE2-224ENST00000557024 GPM6BQ13491 265 aa10.97□□□□□ -0.65
SYNE2-224ENST00000557024 MBTPS1Q14703 1052 aa10.97□□□□□ -0.65
SYNE2-224ENST00000557024 COL19A1Q14993 1142 aa10.97□□□□□ -0.65
SYNE2-224ENST00000557024 ZNF618Q5T7W0 954 aa10.97□□□□□ -0.65
SYNE2-224ENST00000557024 SYDE2Q5VT97 1194 aa10.97□□□□□ -0.65
SYNE2-224ENST00000557024 TRAF7Q6Q0C0 670 aa10.97□□□□□ -0.65
SYNE2-224ENST00000557024 CHST3Q7LGC8 479 aa10.97□□□□□ -0.65
SYNE2-224ENST00000557024 IFNL3Q8IZI9 196 aa10.97□□□□□ -0.65
SYNE2-224ENST00000557024 C7orf31Q8N865 590 aa10.97□□□□□ -0.65
SYNE2-224ENST00000557024 KBTBD3Q8NAB2 608 aa10.97□□□□□ -0.65
SYNE2-224ENST00000557024 WNT8BQ93098 351 aa10.97□□□□□ -0.65
SYNE2-224ENST00000557024 MPHOSPH6Q99547 160 aaKnown RBP10.97□□□□□ -0.65
SYNE2-224ENST00000557024 PLSCR2Q9NRY7 297 aa10.97□□□□□ -0.65
SYNE2-224ENST00000557024 HDAC6Q9UBN7 1215 aa10.97□□□□□ -0.65
SYNE2-224ENST00000557024 GTF2IRD1Q9UHL9 959 aa10.97□□□□□ -0.65
SYNE2-224ENST00000557024 PTPRSQ13332 1948 aa10.97□□□□□ -0.65
SYNE2-224ENST00000557024 MYH4Q9Y623 1939 aa10.96□□□□□ -0.65
SYNE2-224ENST00000557024 TSPY2A6NKD2 308 aa10.96□□□□□ -0.65
SYNE2-224ENST00000557024 PATL2C9JE40 543 aaKnown RBP10.96□□□□□ -0.65
SYNE2-224ENST00000557024 H3BNC9 293 aa10.96□□□□□ -0.65
SYNE2-224ENST00000557024 RNF113AO15541 343 aaKnown RBP10.96□□□□□ -0.65
SYNE2-224ENST00000557024 LGR5O75473 907 aa10.96□□□□□ -0.65
SYNE2-224ENST00000557024 SLC3A2P08195 630 aaKnown RBP10.96□□□□□ -0.65
SYNE2-224ENST00000557024 PTPN5P54829 565 aa10.96□□□□□ -0.65
SYNE2-224ENST00000557024 RPS6P62753 249 aaKnown RBP10.96□□□□□ -0.65
SYNE2-224ENST00000557024 HTRA4P83105 476 aaPredicted RBP10.96□□□□□ -0.65
SYNE2-224ENST00000557024 PPARAQ07869 468 aa10.96□□□□□ -0.65
SYNE2-224ENST00000557024 ARHGAP1Q07960 439 aa10.96□□□□□ -0.65
SYNE2-224ENST00000557024 AAMPQ13685 434 aa10.96□□□□□ -0.65
SYNE2-224ENST00000557024 LY6KQ17RY6 165 aa10.96□□□□□ -0.65
SYNE2-224ENST00000557024 TRIM71Q2Q1W2 868 aaKnown RBP10.96□□□□□ -0.65
SYNE2-224ENST00000557024 HERC4Q5GLZ8 1057 aaPredicted RBP10.96□□□□□ -0.65
SYNE2-224ENST00000557024 PPP4R3BQ5MIZ7 849 aa10.96□□□□□ -0.65
SYNE2-224ENST00000557024 ERICH6BQ5W0A0 696 aa10.96□□□□□ -0.65
SYNE2-224ENST00000557024 CCDC62Q6P9F0 684 aa10.96□□□□□ -0.65
SYNE2-224ENST00000557024 RPAINQ86UA6 219 aa10.96□□□□□ -0.65
SYNE2-224ENST00000557024 RNF135Q8IUD6 432 aa10.96□□□□□ -0.65
SYNE2-224ENST00000557024 GPIHBP1Q8IV16 184 aa10.96□□□□□ -0.65
SYNE2-224ENST00000557024 ALG1Q9BT22 464 aa10.96□□□□□ -0.65
SYNE2-224ENST00000557024 NACAP1Q9BZK3 213 aa10.96□□□□□ -0.65
SYNE2-224ENST00000557024 NSUN3Q9H649 340 aaKnown RBP10.96□□□□□ -0.65
SYNE2-224ENST00000557024 INCENPQ9NQS7 918 aa10.96□□□□□ -0.65
SYNE2-224ENST00000557024 IL17RBQ9NRM6 502 aa10.96□□□□□ -0.65
SYNE2-224ENST00000557024 LCTP09848 1927 aa10.96□□□□□ -0.66
SYNE2-224ENST00000557024 CFAP54Q96N23 3096 aa10.95□□□□□ -0.66
SYNE2-224ENST00000557024 FRMPD2Q68DX3 1309 aaPredicted RBP10.95□□□□□ -0.66
SYNE2-224ENST00000557024 SMARCA5O60264 1052 aaPredicted RBP10.95□□□□□ -0.66
SYNE2-224ENST00000557024 ZMYND10O75800 440 aa10.95□□□□□ -0.66
SYNE2-224ENST00000557024 GH1P01241 217 aa10.95□□□□□ -0.66
SYNE2-224ENST00000557024 CASTP20810 708 aaKnown RBP10.95□□□□□ -0.66
SYNE2-224ENST00000557024 LTBRP36941 435 aa10.95□□□□□ -0.66
SYNE2-224ENST00000557024 ZNF200P98182 395 aaPredicted RBP10.95□□□□□ -0.66
SYNE2-224ENST00000557024 PTK7Q13308 1070 aa10.95□□□□□ -0.66
SYNE2-224ENST00000557024 TSHZ3Q63HK5 1081 aa10.95□□□□□ -0.66
SYNE2-224ENST00000557024 SEPT14Q6ZU15 432 aa10.95□□□□□ -0.66
SYNE2-224ENST00000557024 TMEM192Q8IY95 271 aa10.95□□□□□ -0.66
SYNE2-224ENST00000557024 DBF4BQ8NFT6 615 aa10.95□□□□□ -0.66
SYNE2-224ENST00000557024 DNERQ8NFT8 737 aa10.95□□□□□ -0.66
SYNE2-224ENST00000557024 DCAF4Q8WV16 495 aa10.95□□□□□ -0.66
SYNE2-224ENST00000557024 SAMD11Q96NU1 681 aa10.95□□□□□ -0.66
SYNE2-224ENST00000557024 YME1L1Q96TA2 773 aa10.95□□□□□ -0.66
SYNE2-224ENST00000557024 POP1Q99575 1024 aaKnown RBP10.95□□□□□ -0.66
SYNE2-224ENST00000557024 NAPBQ9H115 298 aa10.95□□□□□ -0.66
SYNE2-224ENST00000557024 GPCPD1Q9NPB8 672 aa10.95□□□□□ -0.66
SYNE2-224ENST00000557024 ECHDC1Q9NTX5 307 aa10.95□□□□□ -0.66
SYNE2-224ENST00000557024 USP34Q70CQ2 3546 aa10.95□□□□□ -0.66
SYNE2-224ENST00000557024 UPP2O95045 317 aa10.94□□□□□ -0.66
SYNE2-224ENST00000557024 ZFYP08048 801 aaPredicted RBP10.94□□□□□ -0.66
SYNE2-224ENST00000557024 ZNF286BP0CG31 522 aa10.94□□□□□ -0.66
SYNE2-224ENST00000557024 PSEN2P49810 448 aa10.94□□□□□ -0.66
SYNE2-224ENST00000557024 CTDSPL2Q05D32 466 aa10.94□□□□□ -0.66
SYNE2-224ENST00000557024 DLX2Q07687 328 aaPredicted RBP10.94□□□□□ -0.66
SYNE2-224ENST00000557024 SMAD2Q15796 467 aaKnown RBP10.94□□□□□ -0.66
SYNE2-224ENST00000557024 DGKDQ16760 1214 aa10.94□□□□□ -0.66
SYNE2-224ENST00000557024 BTNL9Q6UXG8 535 aa10.94□□□□□ -0.66
SYNE2-224ENST00000557024 FBXO11Q86XK2 927 aa10.94□□□□□ -0.66
SYNE2-224ENST00000557024 EDAQ92838 391 aa10.94□□□□□ -0.66
SYNE2-224ENST00000557024 PBXIP1Q96AQ6 731 aa10.94□□□□□ -0.66
SYNE2-224ENST00000557024 SEC62Q99442 399 aaKnown RBP10.94□□□□□ -0.66
SYNE2-224ENST00000557024 LRRCC1Q9C099 1032 aa10.94□□□□□ -0.66
SYNE2-224ENST00000557024 FAM86C1Q9NVL1 165 aa10.94□□□□□ -0.66
SYNE2-224ENST00000557024 DDX52Q9Y2R4 599 aaKnown RBP eCLIP10.94□□□□□ -0.66
SYNE2-224ENST00000557024 GTF3C3Q9Y5Q9 886 aa10.94□□□□□ -0.66
SYNE2-224ENST00000557024 ZNF318Q5VUA4 2279 aa10.94□□□□□ -0.66
SYNE2-224ENST00000557024 SIP14410 1827 aa10.93□□□□□ -0.66
SYNE2-224ENST00000557024 EMSYQ7Z589 1322 aa10.93□□□□□ -0.66
SYNE2-224ENST00000557024 TMEM221A6NGB7 291 aa10.93□□□□□ -0.66
SYNE2-224ENST00000557024 B4DLN1 442 aa10.93□□□□□ -0.66
SYNE2-224ENST00000557024 M0R296 226 aa10.93□□□□□ -0.66
SYNE2-224ENST00000557024 MBTPS2O43462 519 aa10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 58.8 ms