RNA–Protein interactions for RNA: ENST00000556737.1

SHMT2-224, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 572 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-224ENST00000556737 SMARCC2Q8TAQ2 1214 aa11.89□□□□□ -0.51
SHMT2-224ENST00000556737 BRF1Q92994 677 aa11.89□□□□□ -0.51
SHMT2-224ENST00000556737 RNPC3Q96LT9 517 aaKnown RBP11.89□□□□□ -0.51
SHMT2-224ENST00000556737 BCAS3Q9H6U6 928 aa11.89□□□□□ -0.51
SHMT2-224ENST00000556737 COL6A3P12111 3177 aa11.89□□□□□ -0.51
SHMT2-224ENST00000556737 SPATA31C2B4DYI2 1134 aa11.88□□□□□ -0.51
SHMT2-224ENST00000556737 STXBP3O00186 592 aa11.88□□□□□ -0.51
SHMT2-224ENST00000556737 HAS3O00219 553 aa11.88□□□□□ -0.51
SHMT2-224ENST00000556737 SORBS3O60504 671 aa11.88□□□□□ -0.51
SHMT2-224ENST00000556737 TGFB3P10600 412 aa11.88□□□□□ -0.51
SHMT2-224ENST00000556737 CASTP20810 708 aaKnown RBP11.88□□□□□ -0.51
SHMT2-224ENST00000556737 PTPN11Q06124 597 aaPredicted RBP11.88□□□□□ -0.51
SHMT2-224ENST00000556737 PPIGQ13427 754 aaKnown RBP eCLIP11.88□□□□□ -0.513e-10■□□□□ 10.6
SHMT2-224ENST00000556737 LAMC2Q13753 1193 aa11.88□□□□□ -0.51
SHMT2-224ENST00000556737 DGKDQ16760 1214 aa11.88□□□□□ -0.51
SHMT2-224ENST00000556737 FAM47CQ5HY64 1035 aa11.88□□□□□ -0.51
SHMT2-224ENST00000556737 TMEM240Q5SV17 173 aa11.88□□□□□ -0.51
SHMT2-224ENST00000556737 KCNV1Q6PIU1 500 aa11.88□□□□□ -0.51
SHMT2-224ENST00000556737 DHX37Q8IY37 1157 aaKnown RBP11.88□□□□□ -0.51
SHMT2-224ENST00000556737 TMEM199Q8N511 208 aa11.88□□□□□ -0.51
SHMT2-224ENST00000556737 CUL5Q93034 780 aa11.88□□□□□ -0.51
SHMT2-224ENST00000556737 PSTPIP2Q9H939 334 aa11.88□□□□□ -0.51
SHMT2-224ENST00000556737 GBF1Q92538 1859 aa11.88□□□□□ -0.51
SHMT2-224ENST00000556737 FIBPO43427 364 aa11.87□□□□□ -0.51
SHMT2-224ENST00000556737 ADD1P35611 737 aaKnown RBP11.87□□□□□ -0.51
SHMT2-224ENST00000556737 PSEN2P49810 448 aa11.87□□□□□ -0.51
SHMT2-224ENST00000556737 METAP2P50579 478 aaKnown RBP eCLIP11.87□□□□□ -0.512e-6■■■■□ 21
SHMT2-224ENST00000556737 CCL23P55773 120 aa11.87□□□□□ -0.51
SHMT2-224ENST00000556737 SMAD3P84022 425 aaKnown RBP11.87□□□□□ -0.51
SHMT2-224ENST00000556737 TOB2Q14106 344 aaPredicted RBP11.87□□□□□ -0.51
SHMT2-224ENST00000556737 GNPTABQ3T906 1256 aa11.87□□□□□ -0.51
SHMT2-224ENST00000556737 FAM109BQ6ICB4 259 aaPredicted RBP11.87□□□□□ -0.51
SHMT2-224ENST00000556737 GDF6Q6KF10 455 aaPredicted RBP11.87□□□□□ -0.51
SHMT2-224ENST00000556737 XRRA1Q6P2D8 792 aa11.87□□□□□ -0.51
SHMT2-224ENST00000556737 PSRC1Q6PGN9 363 aaPredicted RBP11.87□□□□□ -0.51
SHMT2-224ENST00000556737 DEFB123Q8N688 67 aa11.87□□□□□ -0.51
SHMT2-224ENST00000556737 DHX38Q92620 1227 aaKnown RBP11.87□□□□□ -0.51
SHMT2-224ENST00000556737 SCLYQ96I15 445 aa11.87□□□□□ -0.51
SHMT2-224ENST00000556737 SPATA33Q96N06 139 aa11.87□□□□□ -0.51
SHMT2-224ENST00000556737 USP26Q9BXU7 913 aa11.87□□□□□ -0.51
SHMT2-224ENST00000556737 IL23AQ9NPF7 189 aa11.87□□□□□ -0.51
SHMT2-224ENST00000556737 TELO2Q9Y4R8 837 aa11.87□□□□□ -0.51
SHMT2-224ENST00000556737 PTPRSQ13332 1948 aa11.86□□□□□ -0.51
SHMT2-224ENST00000556737 hCG_1984214I3L0E3 225 aa11.86□□□□□ -0.51
SHMT2-224ENST00000556737 SUPT20HL2P0C7V6 817 aa11.86□□□□□ -0.51
SHMT2-224ENST00000556737 ACRP10323 421 aa11.86□□□□□ -0.51
SHMT2-224ENST00000556737 ITGB5P18084 799 aa11.86□□□□□ -0.51
SHMT2-224ENST00000556737 CLK2P49760 499 aaKnown RBP11.86□□□□□ -0.51
SHMT2-224ENST00000556737 NAPAP54920 295 aa11.86□□□□□ -0.51
SHMT2-224ENST00000556737 EVCP57679 992 aa11.86□□□□□ -0.51
SHMT2-224ENST00000556737 HIC1Q14526 733 aa11.86□□□□□ -0.51
SHMT2-224ENST00000556737 MFSD10Q14728 455 aa11.86□□□□□ -0.51
SHMT2-224ENST00000556737 METTL7BQ6UX53 244 aa11.86□□□□□ -0.51
SHMT2-224ENST00000556737 ZNF365Q70YC5 407 aa11.86□□□□□ -0.51
SHMT2-224ENST00000556737 ZNF713Q8N859 430 aaPredicted RBP11.86□□□□□ -0.51
SHMT2-224ENST00000556737 C16orf70Q9BSU1 422 aa11.86□□□□□ -0.51
SHMT2-224ENST00000556737 ZSWIM6Q9HCJ5 1215 aa11.86□□□□□ -0.51
SHMT2-224ENST00000556737 RIC8AQ9NPQ8 531 aa11.86□□□□□ -0.51
SHMT2-224ENST00000556737 MTMR10Q9NXD2 777 aa11.86□□□□□ -0.51
SHMT2-224ENST00000556737 BARHL2Q9NY43 387 aa11.86□□□□□ -0.51
SHMT2-224ENST00000556737 RTEL1Q9NZ71 1219 aa11.86□□□□□ -0.51
SHMT2-224ENST00000556737 GTF2IRD1Q9UHL9 959 aa11.86□□□□□ -0.51
SHMT2-224ENST00000556737 PCDHA6Q9UN73 950 aa11.86□□□□□ -0.51
SHMT2-224ENST00000556737 PCDHA8Q9Y5H6 950 aa11.86□□□□□ -0.51
SHMT2-224ENST00000556737 V9GY48 417 aaPredicted RBP11.86□□□□□ -0.51
SHMT2-224ENST00000556737 CHD9Q3L8U1 2897 aa11.85□□□□□ -0.51
SHMT2-224ENST00000556737 PITPNM1O00562 1244 aa11.85□□□□□ -0.51
SHMT2-224ENST00000556737 ADAMTS3O15072 1205 aa11.85□□□□□ -0.51
SHMT2-224ENST00000556737 PPFIA4O75335 1185 aa11.85□□□□□ -0.51
SHMT2-224ENST00000556737 LGALS2P05162 132 aa11.85□□□□□ -0.51
SHMT2-224ENST00000556737 KCNA2P16389 499 aa11.85□□□□□ -0.51
SHMT2-224ENST00000556737 PSMA5P28066 241 aa11.85□□□□□ -0.51
SHMT2-224ENST00000556737 HOXC8P31273 242 aa11.85□□□□□ -0.51
SHMT2-224ENST00000556737 FGD1P98174 961 aa11.85□□□□□ -0.51
SHMT2-224ENST00000556737 RBL2Q08999 1139 aa11.85□□□□□ -0.51
SHMT2-224ENST00000556737 NTRK3Q16288 839 aa11.85□□□□□ -0.51
SHMT2-224ENST00000556737 PKN1Q16512 942 aa11.85□□□□□ -0.51
SHMT2-224ENST00000556737 PFKFB3Q16875 520 aaPredicted RBP11.85□□□□□ -0.51
SHMT2-224ENST00000556737 KIAA0753Q2KHM9 967 aa11.85□□□□□ -0.51
SHMT2-224ENST00000556737 RUFY3Q7L099 469 aa11.85□□□□□ -0.51
SHMT2-224ENST00000556737 TEX2Q8IWB9 1127 aa11.85□□□□□ -0.51
SHMT2-224ENST00000556737 HERVK_113Q902F9 699 aa11.85□□□□□ -0.51
SHMT2-224ENST00000556737 GPRASP2Q96D09 838 aa11.85□□□□□ -0.51
SHMT2-224ENST00000556737 PGBD1Q96JS3 809 aa11.85□□□□□ -0.51
SHMT2-224ENST00000556737 GUCD1Q96NT3 240 aa11.85□□□□□ -0.51
SHMT2-224ENST00000556737 GPR20Q99678 358 aa11.85□□□□□ -0.51
SHMT2-224ENST00000556737 KATNAL1Q9BW62 490 aa11.85□□□□□ -0.51
SHMT2-224ENST00000556737 TM6SF1Q9BZW5 370 aa11.85□□□□□ -0.51
SHMT2-224ENST00000556737 CXXC1Q9P0U4 656 aaPredicted RBP11.85□□□□□ -0.51
SHMT2-224ENST00000556737 HDAC6Q9UBN7 1215 aa11.85□□□□□ -0.51
SHMT2-224ENST00000556737 NAP1L2Q9ULW6 460 aaPredicted RBP11.85□□□□□ -0.51
SHMT2-224ENST00000556737 UBIAD1Q9Y5Z9 338 aa11.85□□□□□ -0.51
SHMT2-224ENST00000556737 EYSQ5T1H1 3165 aa11.84□□□□□ -0.51
SHMT2-224ENST00000556737 SIP14410 1827 aa11.84□□□□□ -0.51
SHMT2-224ENST00000556737 SPDYE3A6NKU9 549 aa11.84□□□□□ -0.51
SHMT2-224ENST00000556737 ATP9AO75110 1047 aa11.84□□□□□ -0.51
SHMT2-224ENST00000556737 SCG2P13521 617 aa11.84□□□□□ -0.51
SHMT2-224ENST00000556737 PDIA3P30101 505 aaKnown RBP11.84□□□□□ -0.51
SHMT2-224ENST00000556737 ADCY7P51828 1080 aa11.84□□□□□ -0.51
SHMT2-224ENST00000556737 CHMP4BP1P59074 171 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms