RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 BTBD11A6QL63 1104 aa6.82□□□□□ -1.32
SCFD1-221ENST00000556534 NFIBO00712 420 aa6.82□□□□□ -1.32
SCFD1-221ENST00000556534 TADA3O75528 432 aa6.82□□□□□ -1.32
SCFD1-221ENST00000556534 NAT1P18440 290 aa6.82□□□□□ -1.32
SCFD1-221ENST00000556534 NCKAP1LP55160 1127 aa6.82□□□□□ -1.32
SCFD1-221ENST00000556534 CHRNA2Q15822 529 aa6.82□□□□□ -1.32
SCFD1-221ENST00000556534 ZNF124Q15973 351 aa6.82□□□□□ -1.32
SCFD1-221ENST00000556534 TKFCQ3LXA3 575 aa6.82□□□□□ -1.32
SCFD1-221ENST00000556534 FNDC3BQ53EP0 1204 aaKnown RBP6.82□□□□□ -1.32
SCFD1-221ENST00000556534 ATG14Q6ZNE5 492 aa6.82□□□□□ -1.32
SCFD1-221ENST00000556534 OTOP3Q7RTS5 596 aa6.82□□□□□ -1.32
SCFD1-221ENST00000556534 MIB1Q86YT6 1006 aa6.82□□□□□ -1.32
SCFD1-221ENST00000556534 CILP2Q8IUL8 1156 aa6.82□□□□□ -1.32
SCFD1-221ENST00000556534 KCNN1Q92952 543 aa6.82□□□□□ -1.32
SCFD1-221ENST00000556534 KCNJ15Q99712 375 aa6.82□□□□□ -1.32
SCFD1-221ENST00000556534 RNF38Q9H0F5 515 aa6.82□□□□□ -1.32
SCFD1-221ENST00000556534 SLC6A20Q9NP91 592 aa6.82□□□□□ -1.32
SCFD1-221ENST00000556534 ENPP3O14638 875 aa6.81□□□□□ -1.32
SCFD1-221ENST00000556534 HGSO14964 777 aaPredicted RBP6.81□□□□□ -1.32
SCFD1-221ENST00000556534 CDC45O75419 566 aa6.81□□□□□ -1.32
SCFD1-221ENST00000556534 TMEM253P0C7T8 217 aa6.81□□□□□ -1.32
SCFD1-221ENST00000556534 MC3RP41968 323 aa6.81□□□□□ -1.32
SCFD1-221ENST00000556534 CYP4F22Q6NT55 531 aa6.81□□□□□ -1.32
SCFD1-221ENST00000556534 C16orf86Q6ZW13 317 aa6.81□□□□□ -1.32
SCFD1-221ENST00000556534 AMIGO3Q86WK7 504 aa6.81□□□□□ -1.32
SCFD1-221ENST00000556534 SYNPOQ8N3V7 929 aa6.81□□□□□ -1.32
SCFD1-221ENST00000556534 UHMK1Q8TAS1 419 aaKnown RBP6.81□□□□□ -1.32
SCFD1-221ENST00000556534 APPBP2Q92624 585 aa6.81□□□□□ -1.32
SCFD1-221ENST00000556534 KRTAP4-12Q9BQ66 201 aa6.81□□□□□ -1.32
SCFD1-221ENST00000556534 PCDHB4Q9Y5E5 795 aa6.81□□□□□ -1.32
SCFD1-221ENST00000556534 TCRBV5S2A0A599 114 aa6.8□□□□□ -1.32
SCFD1-221ENST00000556534 TCRBV16S1A1N1A0A5B0 115 aa6.8□□□□□ -1.32
SCFD1-221ENST00000556534 TCAF2A6NFQ2 919 aa6.8□□□□□ -1.32
SCFD1-221ENST00000556534 GNAT1P11488 350 aa6.8□□□□□ -1.32
SCFD1-221ENST00000556534 COL6A2P12110 1019 aa6.8□□□□□ -1.32
SCFD1-221ENST00000556534 ATF2P15336 505 aa6.8□□□□□ -1.32
SCFD1-221ENST00000556534 SSPNQ14714 243 aa6.8□□□□□ -1.32
SCFD1-221ENST00000556534 PKN1Q16512 942 aa6.8□□□□□ -1.32
SCFD1-221ENST00000556534 MILR1Q7Z6M3 343 aa6.8□□□□□ -1.32
SCFD1-221ENST00000556534 PHOSPHO1Q8TCT1 267 aa6.8□□□□□ -1.32
SCFD1-221ENST00000556534 CPA5Q8WXQ8 436 aa6.8□□□□□ -1.32
SCFD1-221ENST00000556534 SIGLEC10Q96LC7 697 aa6.8□□□□□ -1.32
SCFD1-221ENST00000556534 MYOTQ9UBF9 498 aa6.8□□□□□ -1.32
SCFD1-221ENST00000556534 SMG5Q9UPR3 1016 aaKnown RBP6.8□□□□□ -1.32
SCFD1-221ENST00000556534 CD2APQ9Y5K6 639 aa6.8□□□□□ -1.32
SCFD1-221ENST00000556534 KRIT1O00522 736 aa6.79□□□□□ -1.32
SCFD1-221ENST00000556534 NKRFO15226 690 aaKnown RBP eCLIP6.79□□□□□ -1.32
SCFD1-221ENST00000556534 RFPL3O75679 317 aa6.79□□□□□ -1.32
SCFD1-221ENST00000556534 DNAJC8O75937 253 aaPredicted RBP6.79□□□□□ -1.32
SCFD1-221ENST00000556534 CKMP06732 381 aa6.79□□□□□ -1.32
SCFD1-221ENST00000556534 RAP1GAPP47736 663 aa6.79□□□□□ -1.32
SCFD1-221ENST00000556534 PABPC4Q13310 644 aaKnown RBP eCLIP6.79□□□□□ -1.32
SCFD1-221ENST00000556534 TCEA2Q15560 299 aa6.79□□□□□ -1.32
SCFD1-221ENST00000556534 TARBP2Q15633 366 aaKnown RBP6.79□□□□□ -1.32
SCFD1-221ENST00000556534 ZC3H7AQ8IWR0 971 aaKnown RBP6.79□□□□□ -1.32
SCFD1-221ENST00000556534 FAM126BQ8IXS8 530 aa6.79□□□□□ -1.32
SCFD1-221ENST00000556534 TMEFF1Q8IYR6 380 aa6.79□□□□□ -1.32
SCFD1-221ENST00000556534 ARRDC4Q8NCT1 418 aa6.79□□□□□ -1.32
SCFD1-221ENST00000556534 FBXW5Q969U6 566 aa6.79□□□□□ -1.32
SCFD1-221ENST00000556534 MAGEB10Q96LZ2 347 aaPredicted RBP6.79□□□□□ -1.32
SCFD1-221ENST00000556534 SMOC1Q9H4F8 434 aa6.79□□□□□ -1.32
SCFD1-221ENST00000556534 EPB41L4AQ9HCS5 686 aaPredicted RBP6.79□□□□□ -1.32
SCFD1-221ENST00000556534 ASH2LQ9UBL3 628 aa6.79□□□□□ -1.32
SCFD1-221ENST00000556534 CBLCQ9ULV8 474 aa6.79□□□□□ -1.32
SCFD1-221ENST00000556534 TCRBV5S4A2TA0A5A2 114 aa6.78□□□□□ -1.32
SCFD1-221ENST00000556534 TLDC2A0PJX2 215 aa6.78□□□□□ -1.32
SCFD1-221ENST00000556534 BUB1BO60566 1050 aaPredicted RBP6.78□□□□□ -1.32
SCFD1-221ENST00000556534 C8BP07358 591 aa6.78□□□□□ -1.32
SCFD1-221ENST00000556534 SRGAP2CP0DJJ0 459 aa6.78□□□□□ -1.32
SCFD1-221ENST00000556534 PYGMP11217 842 aa6.78□□□□□ -1.32
SCFD1-221ENST00000556534 NCAM1P13591 858 aa6.78□□□□□ -1.32
SCFD1-221ENST00000556534 PFKLP17858 780 aa6.78□□□□□ -1.32
SCFD1-221ENST00000556534 PI3P19957 117 aa6.78□□□□□ -1.32
SCFD1-221ENST00000556534 LINC00310P59036 64 aa6.78□□□□□ -1.32
SCFD1-221ENST00000556534 SPIRE1Q08AE8 756 aa6.78□□□□□ -1.32
SCFD1-221ENST00000556534 ABHD17CQ6PCB6 329 aa6.78□□□□□ -1.32
SCFD1-221ENST00000556534 ETV3LQ6ZN32 361 aa6.78□□□□□ -1.32
SCFD1-221ENST00000556534 KIAA0907Q7Z7F0 614 aaPredicted RBP6.78□□□□□ -1.32
SCFD1-221ENST00000556534 B3GNT8Q7Z7M8 397 aa6.78□□□□□ -1.32
SCFD1-221ENST00000556534 KRTAP19-1Q8IUB9 90 aa6.78□□□□□ -1.32
SCFD1-221ENST00000556534 SH3RF2Q8TEC5 729 aa6.78□□□□□ -1.32
SCFD1-221ENST00000556534 TMA7Q9Y2S6 64 aaKnown RBP6.78□□□□□ -1.32
SCFD1-221ENST00000556534 IRAK3Q9Y616 596 aa6.78□□□□□ -1.32
SCFD1-221ENST00000556534 CCDC66A2RUB6 948 aa6.77□□□□□ -1.33
SCFD1-221ENST00000556534 NPIPB6E9PJ23 425 aa6.77□□□□□ -1.33
SCFD1-221ENST00000556534 ZNF561-AS1K7EIQ3 104 aa6.77□□□□□ -1.33
SCFD1-221ENST00000556534 SLC27A2O14975 620 aa6.77□□□□□ -1.33
SCFD1-221ENST00000556534 MAFKO60675 156 aa6.77□□□□□ -1.33
SCFD1-221ENST00000556534 KCNA6P17658 529 aa6.77□□□□□ -1.33
SCFD1-221ENST00000556534 SDSP20132 328 aa6.77□□□□□ -1.33
SCFD1-221ENST00000556534 LIMS1P48059 325 aa6.77□□□□□ -1.33
SCFD1-221ENST00000556534 CACNB2Q08289 660 aaPredicted RBP6.77□□□□□ -1.33
SCFD1-221ENST00000556534 KCNA10Q16322 511 aa6.77□□□□□ -1.33
SCFD1-221ENST00000556534 C16orf59Q7L2K0 433 aa6.77□□□□□ -1.33
SCFD1-221ENST00000556534 TTLL11Q8NHH1 800 aa6.77□□□□□ -1.33
SCFD1-221ENST00000556534 FEZ1Q99689 392 aa6.77□□□□□ -1.33
SCFD1-221ENST00000556534 CELF4Q9BZC1 486 aaKnown RBP6.77□□□□□ -1.33
SCFD1-221ENST00000556534 SRPK3Q9UPE1 567 aa6.77□□□□□ -1.33
SCFD1-221ENST00000556534 COQ6Q9Y2Z9 468 aa6.77□□□□□ -1.33
SCFD1-221ENST00000556534 TELO2Q9Y4R8 837 aa6.77□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms