RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 FBXO40Q9UH90 709 aa11.86□□□□□ -0.51
SCFD1-220ENST00000556486 FEM1BQ9UK73 627 aa11.86□□□□□ -0.51
SCFD1-220ENST00000556486 BRWD1Q9NSI6 2320 aa11.86□□□□□ -0.51
SCFD1-220ENST00000556486 TNKSO95271 1327 aa11.86□□□□□ -0.51
SCFD1-220ENST00000556486 PI4K2BG5E9Z4 385 aa11.85□□□□□ -0.51
SCFD1-220ENST00000556486 M0R2C6 588 aa11.85□□□□□ -0.51
SCFD1-220ENST00000556486 PLA2G6O60733 806 aa11.85□□□□□ -0.51
SCFD1-220ENST00000556486 ALAS1P13196 640 aa11.85□□□□□ -0.51
SCFD1-220ENST00000556486 POU3F3P20264 500 aaPredicted RBP11.85□□□□□ -0.51
SCFD1-220ENST00000556486 TDO2P48775 406 aa11.85□□□□□ -0.51
SCFD1-220ENST00000556486 IKQ13123 557 aaPredicted RBP11.85□□□□□ -0.51
SCFD1-220ENST00000556486 KIAA1211Q6ZU35 1233 aa11.85□□□□□ -0.51
SCFD1-220ENST00000556486 HERC6Q8IVU3 1022 aa11.85□□□□□ -0.51
SCFD1-220ENST00000556486 ZNF444Q8N0Y2 327 aaPredicted RBP11.85□□□□□ -0.51
SCFD1-220ENST00000556486 CHST13Q8NET6 341 aa11.85□□□□□ -0.51
SCFD1-220ENST00000556486 GMCL1Q96IK5 515 aa11.85□□□□□ -0.51
SCFD1-220ENST00000556486 NACAP1Q9BZK3 213 aa11.85□□□□□ -0.51
SCFD1-220ENST00000556486 KIAA1468Q9P260 1216 aa11.85□□□□□ -0.51
SCFD1-220ENST00000556486 SALL3Q9BXA9 1300 aa11.85□□□□□ -0.51
SCFD1-220ENST00000556486 PIEZO1Q92508 2521 aa11.84□□□□□ -0.51
SCFD1-220ENST00000556486 TMEM232C9JQI7 657 aa11.84□□□□□ -0.51
SCFD1-220ENST00000556486 ZEB2O60315 1214 aa11.84□□□□□ -0.51
SCFD1-220ENST00000556486 ACTN1P12814 892 aa11.84□□□□□ -0.51
SCFD1-220ENST00000556486 IL9P15248 144 aa11.84□□□□□ -0.51
SCFD1-220ENST00000556486 NOVP48745 357 aa11.84□□□□□ -0.51
SCFD1-220ENST00000556486 PDE4BQ07343 736 aa11.84□□□□□ -0.51
SCFD1-220ENST00000556486 NR6A1Q15406 480 aa11.84□□□□□ -0.51
SCFD1-220ENST00000556486 MUM1L1Q5H9M0 696 aa11.84□□□□□ -0.51
SCFD1-220ENST00000556486 ZMYM1Q5SVZ6 1142 aa11.84□□□□□ -0.51
SCFD1-220ENST00000556486 TSHZ3Q63HK5 1081 aa11.84□□□□□ -0.51
SCFD1-220ENST00000556486 TAPT1Q6NXT6 567 aa11.84□□□□□ -0.51
SCFD1-220ENST00000556486 SND1Q7KZF4 910 aaKnown RBP eCLIP11.84□□□□□ -0.51
SCFD1-220ENST00000556486 TICAM2Q86XR7 235 aa11.84□□□□□ -0.51
SCFD1-220ENST00000556486 SLC9A7Q96T83 725 aa11.84□□□□□ -0.51
SCFD1-220ENST00000556486 TRIP12Q14669 1992 aaPredicted RBP11.84□□□□□ -0.51
SCFD1-220ENST00000556486 C5orf42Q9H799 3197 aa11.84□□□□□ -0.51
SCFD1-220ENST00000556486 ZNF536O15090 1300 aa11.84□□□□□ -0.51
SCFD1-220ENST00000556486 ASB14A6NK59 587 aa11.83□□□□□ -0.52
SCFD1-220ENST00000556486 FOXP2O15409 715 aa11.83□□□□□ -0.52
SCFD1-220ENST00000556486 SLC3A2P08195 630 aaKnown RBP11.83□□□□□ -0.52
SCFD1-220ENST00000556486 KCNA5P22460 613 aa11.83□□□□□ -0.52
SCFD1-220ENST00000556486 NBPF20Q3BBV1 942 aa11.83□□□□□ -0.52
SCFD1-220ENST00000556486 SLFN13Q68D06 897 aa11.83□□□□□ -0.52
SCFD1-220ENST00000556486 FAM117BQ6P1L5 589 aa11.83□□□□□ -0.52
SCFD1-220ENST00000556486 NSMFQ6X4W1 530 aa11.83□□□□□ -0.52
SCFD1-220ENST00000556486 PNMA1Q8ND90 353 aa11.83□□□□□ -0.52
SCFD1-220ENST00000556486 TRERF1Q96PN7 1200 aa11.83□□□□□ -0.52
SCFD1-220ENST00000556486 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.83□□□□□ -0.52
SCFD1-220ENST00000556486 TRIOO75962 3097 aa11.83□□□□□ -0.52
SCFD1-220ENST00000556486 APPP05067 770 aa11.82□□□□□ -0.52
SCFD1-220ENST00000556486 PFKMP08237 780 aa11.82□□□□□ -0.52
SCFD1-220ENST00000556486 FGRP09769 529 aa11.82□□□□□ -0.52
SCFD1-220ENST00000556486 TSPY3P0CV98 308 aa11.82□□□□□ -0.52
SCFD1-220ENST00000556486 TSPY8P0CW00 308 aa11.82□□□□□ -0.52
SCFD1-220ENST00000556486 BMP3P12645 472 aa11.82□□□□□ -0.52
SCFD1-220ENST00000556486 STAT2P52630 851 aa11.82□□□□□ -0.52
SCFD1-220ENST00000556486 DEFB103AP81534 67 aa11.82□□□□□ -0.52
SCFD1-220ENST00000556486 PPARAQ07869 468 aa11.82□□□□□ -0.52
SCFD1-220ENST00000556486 KCTD1Q719H9 257 aa11.82□□□□□ -0.52
SCFD1-220ENST00000556486 FAM160B2Q86V87 743 aa11.82□□□□□ -0.52
SCFD1-220ENST00000556486 GJD3Q8N144 294 aa11.82□□□□□ -0.52
SCFD1-220ENST00000556486 SEC62Q99442 399 aaKnown RBP11.82□□□□□ -0.52
SCFD1-220ENST00000556486 NAPBQ9H115 298 aa11.82□□□□□ -0.52
SCFD1-220ENST00000556486 UBE2ZQ9H832 354 aaPredicted RBP11.82□□□□□ -0.52
SCFD1-220ENST00000556486 ANAPC4Q9UJX5 808 aa11.82□□□□□ -0.52
SCFD1-220ENST00000556486 SIP14410 1827 aa11.81□□□□□ -0.52
SCFD1-220ENST00000556486 PRR33A8MZF0 331 aa11.81□□□□□ -0.52
SCFD1-220ENST00000556486 KIF28PB7ZC32 967 aa11.81□□□□□ -0.52
SCFD1-220ENST00000556486 IQCF3P0C7M6 154 aa11.81□□□□□ -0.52
SCFD1-220ENST00000556486 MX1P20591 662 aa11.81□□□□□ -0.52
SCFD1-220ENST00000556486 KCNJ6P48051 423 aa11.81□□□□□ -0.52
SCFD1-220ENST00000556486 PURAQ00577 322 aaKnown RBP11.81□□□□□ -0.52
SCFD1-220ENST00000556486 TFAP4Q01664 338 aa11.81□□□□□ -0.52
SCFD1-220ENST00000556486 NHLH1Q02575 133 aa11.81□□□□□ -0.52
SCFD1-220ENST00000556486 FUT2Q10981 343 aa11.81□□□□□ -0.52
SCFD1-220ENST00000556486 TCTN1Q2MV58 587 aa11.81□□□□□ -0.52
SCFD1-220ENST00000556486 TKFCQ3LXA3 575 aa11.81□□□□□ -0.52
SCFD1-220ENST00000556486 IQSEC1Q6DN90 963 aa11.81□□□□□ -0.52
SCFD1-220ENST00000556486 FAM178BQ8IXR5 827 aa11.81□□□□□ -0.52
SCFD1-220ENST00000556486 OR6J1Q8NGC5 347 aa11.81□□□□□ -0.52
SCFD1-220ENST00000556486 GADD45GIP1Q8TAE8 222 aaPredicted RBP11.81□□□□□ -0.52
SCFD1-220ENST00000556486 OTUD7AQ8TE49 926 aaPredicted RBP11.81□□□□□ -0.52
SCFD1-220ENST00000556486 CHURC1Q8WUH1 139 aa11.81□□□□□ -0.52
SCFD1-220ENST00000556486 STAG1Q8WVM7 1258 aa11.81□□□□□ -0.52
SCFD1-220ENST00000556486 COPS5Q92905 334 aa11.81□□□□□ -0.52
SCFD1-220ENST00000556486 KCTD12Q96CX2 325 aaKnown RBP11.81□□□□□ -0.52
SCFD1-220ENST00000556486 FBXL18Q96ME1 805 aa11.81□□□□□ -0.52
SCFD1-220ENST00000556486 CYP39A1Q9NYL5 469 aa11.81□□□□□ -0.52
SCFD1-220ENST00000556486 SCN10AQ9Y5Y9 1956 aa11.8□□□□□ -0.52
SCFD1-220ENST00000556486 H3BQ06 376 aaPredicted RBP11.8□□□□□ -0.52
SCFD1-220ENST00000556486 ATP9BO43861 1147 aa11.8□□□□□ -0.52
SCFD1-220ENST00000556486 SUPT20HL2P0C7V6 817 aa11.8□□□□□ -0.52
SCFD1-220ENST00000556486 MCCP23508 829 aa11.8□□□□□ -0.52
SCFD1-220ENST00000556486 SLC1A4P43007 532 aa11.8□□□□□ -0.52
SCFD1-220ENST00000556486 WDR5P61964 334 aaKnown RBP11.8□□□□□ -0.52
SCFD1-220ENST00000556486 ALX1Q15699 326 aa11.8□□□□□ -0.52
SCFD1-220ENST00000556486 DUSP28Q4G0W2 176 aa11.8□□□□□ -0.52
SCFD1-220ENST00000556486 PTCRAQ6ISU1 281 aaPredicted RBP11.8□□□□□ -0.52
SCFD1-220ENST00000556486 EP400NLQ6ZTU2 488 aa11.8□□□□□ -0.52
SCFD1-220ENST00000556486 FSD1Q9BTV5 496 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms