RNA–Protein interactions for RNA: ENST00000556353.1

PRPF39-209, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 687 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-209ENST00000556353 GJA9P57773 515 aa8□□□□□ -1.13
PRPF39-209ENST00000556353 NAALADL2Q58DX5 795 aa8□□□□□ -1.13
PRPF39-209ENST00000556353 STEAP3Q658P3 488 aa8□□□□□ -1.13
PRPF39-209ENST00000556353 KYQ8NBH2 561 aa8□□□□□ -1.13
PRPF39-209ENST00000556353 PCDHB4Q9Y5E5 795 aa8□□□□□ -1.13
PRPF39-209ENST00000556353 U2SURPO15042 1029 aaKnown RBP7.99□□□□□ -1.13
PRPF39-209ENST00000556353 NKX3-2P78367 333 aa7.99□□□□□ -1.13
PRPF39-209ENST00000556353 EMC4Q5J8M3 183 aa7.99□□□□□ -1.13
PRPF39-209ENST00000556353 RSPO2Q6UXX9 243 aaPredicted RBP7.99□□□□□ -1.13
PRPF39-209ENST00000556353 TTLL6Q8N841 843 aa7.99□□□□□ -1.13
PRPF39-209ENST00000556353 SYT3Q9BQG1 590 aa7.99□□□□□ -1.13
PRPF39-209ENST00000556353 ARHGEF4Q9NR80 690 aa7.99□□□□□ -1.13
PRPF39-209ENST00000556353 PRODHO43272 600 aa7.98□□□□□ -1.13
PRPF39-209ENST00000556353 MAFKO60675 156 aa7.98□□□□□ -1.13
PRPF39-209ENST00000556353 FGFR1P11362 822 aa7.98□□□□□ -1.13
PRPF39-209ENST00000556353 THBS2P35442 1172 aa7.98□□□□□ -1.13
PRPF39-209ENST00000556353 ITGA1P56199 1179 aa7.98□□□□□ -1.13
PRPF39-209ENST00000556353 LRRC47Q8N1G4 583 aaKnown RBP7.98□□□□□ -1.13
PRPF39-209ENST00000556353 PPIL4Q8WUA2 492 aaKnown RBP eCLIP7.98□□□□□ -1.13
PRPF39-209ENST00000556353 PHF20Q9BVI0 1012 aa7.98□□□□□ -1.13
PRPF39-209ENST00000556353 TCRBV5S2A0A599 114 aa7.97□□□□□ -1.13
PRPF39-209ENST00000556353 TADA3O75528 432 aa7.97□□□□□ -1.13
PRPF39-209ENST00000556353 CELA3BP08861 270 aa7.97□□□□□ -1.13
PRPF39-209ENST00000556353 RPL13P26373 211 aaKnown RBP7.97□□□□□ -1.13
PRPF39-209ENST00000556353 CR1LQ2VPA4 569 aa7.97□□□□□ -1.13
PRPF39-209ENST00000556353 UBXN11Q5T124 520 aa7.97□□□□□ -1.13
PRPF39-209ENST00000556353 NSMFQ6X4W1 530 aa7.97□□□□□ -1.13
PRPF39-209ENST00000556353 STK32CQ86UX6 486 aa7.97□□□□□ -1.13
PRPF39-209ENST00000556353 ZNF761Q86XN6 746 aaPredicted RBP7.97□□□□□ -1.13
PRPF39-209ENST00000556353 ARRDC4Q8NCT1 418 aa7.97□□□□□ -1.13
PRPF39-209ENST00000556353 DCAF4Q8WV16 495 aa7.97□□□□□ -1.13
PRPF39-209ENST00000556353 ZNF669Q96BR6 464 aaPredicted RBP7.97□□□□□ -1.13
PRPF39-209ENST00000556353 TOE1Q96GM8 510 aaKnown RBP7.97□□□□□ -1.13
PRPF39-209ENST00000556353 DTLQ9NZJ0 730 aa7.97□□□□□ -1.13
PRPF39-209ENST00000556353 PPP1R1BQ9UD71 204 aaPredicted RBP7.97□□□□□ -1.13
PRPF39-209ENST00000556353 TRAV20A0A0B4J274 112 aa7.96□□□□□ -1.14
PRPF39-209ENST00000556353 KRIT1O00522 736 aa7.96□□□□□ -1.14
PRPF39-209ENST00000556353 NOBOXO60393 691 aa7.96□□□□□ -1.14
PRPF39-209ENST00000556353 PABPC1P11940 636 aaKnown RBP7.96□□□□□ -1.14
PRPF39-209ENST00000556353 ZFYVE27Q5T4F4 411 aa7.96□□□□□ -1.14
PRPF39-209ENST00000556353 PHOSPHO1Q8TCT1 267 aa7.96□□□□□ -1.14
PRPF39-209ENST00000556353 ADAMTS17Q8TE56 1095 aa7.96□□□□□ -1.14
PRPF39-209ENST00000556353 OSBP2Q969R2 916 aa7.96□□□□□ -1.14
PRPF39-209ENST00000556353 CDIP1Q9H305 208 aa7.96□□□□□ -1.14
PRPF39-209ENST00000556353 SMOC1Q9H4F8 434 aa7.96□□□□□ -1.14
PRPF39-209ENST00000556353 MYOTQ9UBF9 498 aa7.96□□□□□ -1.14
PRPF39-209ENST00000556353 CCDC180Q9P1Z9 1646 aa7.96□□□□□ -1.14
PRPF39-209ENST00000556353 PRICKLE3O43900 615 aaPredicted RBP7.95□□□□□ -1.14
PRPF39-209ENST00000556353 MSCO60682 206 aa7.95□□□□□ -1.14
PRPF39-209ENST00000556353 RTP5Q14D33 572 aa7.95□□□□□ -1.14
PRPF39-209ENST00000556353 BDH2Q9BUT1 245 aa7.95□□□□□ -1.14
PRPF39-209ENST00000556353 JAM3Q9BX67 310 aa7.95□□□□□ -1.14
PRPF39-209ENST00000556353 TANGO6Q9C0B7 1094 aa7.95□□□□□ -1.14
PRPF39-209ENST00000556353 ATP2B1P20020 1258 aa7.94□□□□□ -1.14
PRPF39-209ENST00000556353 PLP2Q04941 152 aa7.94□□□□□ -1.14
PRPF39-209ENST00000556353 IFRD2Q12894 506 aaPredicted RBP7.94□□□□□ -1.14
PRPF39-209ENST00000556353 KIZQ2M2Z5 673 aa7.94□□□□□ -1.14
PRPF39-209ENST00000556353 SKOR2Q2VWA4 1001 aaPredicted RBP7.94□□□□□ -1.14
PRPF39-209ENST00000556353 CYP4F22Q6NT55 531 aa7.94□□□□□ -1.14
PRPF39-209ENST00000556353 LBX2Q6XYB7 198 aa7.94□□□□□ -1.14
PRPF39-209ENST00000556353 DDX1Q92499 740 aaKnown RBP7.94□□□□□ -1.14
PRPF39-209ENST00000556353 ZFYVE21Q9BQ24 234 aa7.94□□□□□ -1.14
PRPF39-209ENST00000556353 LNPKQ9C0E8 428 aa7.94□□□□□ -1.14
PRPF39-209ENST00000556353 SLC6A20Q9NP91 592 aa7.94□□□□□ -1.14
PRPF39-209ENST00000556353 PDPK1O15530 556 aa7.93□□□□□ -1.14
PRPF39-209ENST00000556353 CNR2P34972 360 aa7.93□□□□□ -1.14
PRPF39-209ENST00000556353 NTRK3Q16288 839 aa7.93□□□□□ -1.14
PRPF39-209ENST00000556353 YOD1Q5VVQ6 348 aaPredicted RBP7.93□□□□□ -1.14
PRPF39-209ENST00000556353 TEPPQ6URK8 271 aa7.93□□□□□ -1.14
PRPF39-209ENST00000556353 KCNT2Q6UVM3 1135 aa7.93□□□□□ -1.14
PRPF39-209ENST00000556353 DPH6Q7L8W6 267 aa7.93□□□□□ -1.14
PRPF39-209ENST00000556353 FERMT3Q86UX7 667 aa7.93□□□□□ -1.14
PRPF39-209ENST00000556353 TRIM48Q8IWZ4 208 aa7.93□□□□□ -1.14
PRPF39-209ENST00000556353 PIP4K2CQ8TBX8 421 aa7.93□□□□□ -1.14
PRPF39-209ENST00000556353 PPARGC1AQ9UBK2 798 aaKnown RBP7.93□□□□□ -1.14
PRPF39-209ENST00000556353 ASH2LQ9UBL3 628 aa7.93□□□□□ -1.14
PRPF39-209ENST00000556353 MSRB2Q9Y3D2 182 aa7.93□□□□□ -1.14
PRPF39-209ENST00000556353 GRK2P25098 689 aa7.92□□□□□ -1.14
PRPF39-209ENST00000556353 GRK3P35626 688 aa7.92□□□□□ -1.14
PRPF39-209ENST00000556353 GPR85P60893 370 aa7.92□□□□□ -1.14
PRPF39-209ENST00000556353 ADAM9Q13443 819 aa7.92□□□□□ -1.14
PRPF39-209ENST00000556353 RGL3Q3MIN7 710 aa7.92□□□□□ -1.14
PRPF39-209ENST00000556353 MTERF2Q49AM1 385 aa7.92□□□□□ -1.14
PRPF39-209ENST00000556353 FAM26FQ5R3K3 315 aa7.92□□□□□ -1.14
PRPF39-209ENST00000556353 PRR31Q5SQ13 230 aa7.92□□□□□ -1.14
PRPF39-209ENST00000556353 NBPF6Q5VWK0 638 aa7.92□□□□□ -1.14
PRPF39-209ENST00000556353 STYK1Q6J9G0 422 aa7.92□□□□□ -1.14
PRPF39-209ENST00000556353 IFNL3Q8IZI9 196 aa7.92□□□□□ -1.14
PRPF39-209ENST00000556353 NBPF4Q96M43 638 aa7.92□□□□□ -1.14
PRPF39-209ENST00000556353 SPATA9Q9BWV2 254 aa7.92□□□□□ -1.14
PRPF39-209ENST00000556353 DUSP10Q9Y6W6 482 aa7.92□□□□□ -1.14
PRPF39-209ENST00000556353 BLACEA4D250 179 aa7.91□□□□□ -1.14
PRPF39-209ENST00000556353 DDX3XO00571 662 aaKnown RBP eCLIP7.91□□□□□ -1.14
PRPF39-209ENST00000556353 LRG1P02750 347 aa7.91□□□□□ -1.14
PRPF39-209ENST00000556353 SPIRE1Q08AE8 756 aa7.91□□□□□ -1.14
PRPF39-209ENST00000556353 KIAA2012Q0VF49 1180 aa7.91□□□□□ -1.14
PRPF39-209ENST00000556353 RASGRF1Q13972 1273 aa7.91□□□□□ -1.14
PRPF39-209ENST00000556353 MCTP2Q6DN12 878 aa7.91□□□□□ -1.14
PRPF39-209ENST00000556353 SPATC1Q76KD6 591 aa7.91□□□□□ -1.14
PRPF39-209ENST00000556353 OTOP3Q7RTS5 596 aa7.91□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms