RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 HYOU1Q9Y4L1 999 aa16.36■□□□□ 0.21
CUX1-215ENST00000556210 GOLGA6BA6NDN3 693 aa16.36■□□□□ 0.21
CUX1-215ENST00000556210 N4BP1O75113 896 aaKnown RBP16.36■□□□□ 0.21
CUX1-215ENST00000556210 VWA3BQ502W6 1294 aa16.36■□□□□ 0.21
CUX1-215ENST00000556210 IPO4Q8TEX9 1081 aaKnown RBP16.36■□□□□ 0.21
CUX1-215ENST00000556210 MMS19Q96T76 1030 aa16.36■□□□□ 0.21
CUX1-215ENST00000556210 NUDT12Q9BQG2 462 aa16.36■□□□□ 0.21
CUX1-215ENST00000556210 PCIF1Q9H4Z3 704 aa16.36■□□□□ 0.21
CUX1-215ENST00000556210 DDX52Q9Y2R4 599 aaKnown RBP eCLIP16.36■□□□□ 0.212e-7■□□□□ 10.7
CUX1-215ENST00000556210 AFF2P51816 1311 aa16.36■□□□□ 0.21
CUX1-215ENST00000556210 EPB41P11171 864 aaKnown RBP16.36■□□□□ 0.21
CUX1-215ENST00000556210 XRCC5P13010 732 aaKnown RBP16.36■□□□□ 0.21
CUX1-215ENST00000556210 SBK1Q52WX2 424 aa16.36■□□□□ 0.21
CUX1-215ENST00000556210 GLIS3Q8NEA6 775 aa16.36■□□□□ 0.21
CUX1-215ENST00000556210 LACRTQ9GZZ8 138 aa16.36■□□□□ 0.21
CUX1-215ENST00000556210 RGL1Q9NZL6 768 aa16.36■□□□□ 0.21
CUX1-215ENST00000556210 PNMA6FA0A0J9YX94 578 aa16.35■□□□□ 0.21
CUX1-215ENST00000556210 GAS7O60861 476 aa16.35■□□□□ 0.21
CUX1-215ENST00000556210 PDXDC2PQ6P474 469 aa16.35■□□□□ 0.21
CUX1-215ENST00000556210 CCDC25Q86WR0 208 aa16.35■□□□□ 0.21
CUX1-215ENST00000556210 MED15Q96RN5 788 aa16.35■□□□□ 0.21
CUX1-215ENST00000556210 PCDHAC2Q9Y5I4 1007 aa16.35■□□□□ 0.21
CUX1-215ENST00000556210 RGPD5Q99666 1765 aa16.35■□□□□ 0.21
CUX1-215ENST00000556210 GUCY2DQ02846 1103 aa16.35■□□□□ 0.21
CUX1-215ENST00000556210 MAN2A1Q16706 1144 aa16.35■□□□□ 0.21
CUX1-215ENST00000556210 FAM71BQ8TC56 605 aa16.35■□□□□ 0.21
CUX1-215ENST00000556210 MKRN1Q9UHC7 482 aaKnown RBP16.35■□□□□ 0.21
CUX1-215ENST00000556210 GJA3Q9Y6H8 435 aa16.35■□□□□ 0.21
CUX1-215ENST00000556210 GOLGA6CA6NDK9 693 aa16.35■□□□□ 0.21
CUX1-215ENST00000556210 C21orf2O43822 256 aa16.35■□□□□ 0.21
CUX1-215ENST00000556210 GOLGA6DP0CG33 693 aa16.35■□□□□ 0.21
CUX1-215ENST00000556210 CRKP46108 304 aa16.35■□□□□ 0.21
CUX1-215ENST00000556210 CCDC127Q96BQ5 260 aa16.35■□□□□ 0.21
CUX1-215ENST00000556210 AMNQ9BXJ7 453 aa16.35■□□□□ 0.21
CUX1-215ENST00000556210 ANO3Q9BYT9 981 aa16.35■□□□□ 0.21
CUX1-215ENST00000556210 THAP9Q9H5L6 903 aa16.35■□□□□ 0.21
CUX1-215ENST00000556210 GOLGA6AQ9NYA3 693 aa16.35■□□□□ 0.21
CUX1-215ENST00000556210 PCDHA13Q9Y5I0 950 aa16.35■□□□□ 0.21
CUX1-215ENST00000556210 ALAS1P13196 640 aa16.35■□□□□ 0.21
CUX1-215ENST00000556210 ALDH1B1P30837 517 aa16.35■□□□□ 0.21
CUX1-215ENST00000556210 CFAP58Q5T655 872 aa16.35■□□□□ 0.21
CUX1-215ENST00000556210 TMED8Q6PL24 325 aaPredicted RBP16.35■□□□□ 0.21
CUX1-215ENST00000556210 TRIM58Q8NG06 486 aa16.35■□□□□ 0.21
CUX1-215ENST00000556210 FAM212AQ96EL1 285 aa16.35■□□□□ 0.21
CUX1-215ENST00000556210 DCCP43146 1447 aa16.34■□□□□ 0.21
CUX1-215ENST00000556210 ARHGEF35A5YM69 484 aa16.34■□□□□ 0.21
CUX1-215ENST00000556210 RNF40O75150 1001 aa16.34■□□□□ 0.21
CUX1-215ENST00000556210 AOC3Q16853 763 aa16.34■□□□□ 0.21
CUX1-215ENST00000556210 GJD4Q96KN9 370 aaPredicted RBP16.34■□□□□ 0.21
CUX1-215ENST00000556210 KRT12Q99456 494 aa16.34■□□□□ 0.21
CUX1-215ENST00000556210 MTRQ99707 1265 aa16.34■□□□□ 0.21
CUX1-215ENST00000556210 FUT8Q9BYC5 575 aa16.34■□□□□ 0.21
CUX1-215ENST00000556210 NT5C3AQ9H0P0 336 aa16.34■□□□□ 0.21
CUX1-215ENST00000556210 MYO1AQ9UBC5 1043 aa16.34■□□□□ 0.21
CUX1-215ENST00000556210 LAD1O00515 517 aa16.34■□□□□ 0.21
CUX1-215ENST00000556210 SF3B2Q13435 895 aaKnown RBP16.34■□□□□ 0.21
CUX1-215ENST00000556210 DLGAP5Q15398 846 aa16.34■□□□□ 0.21
CUX1-215ENST00000556210 SHROOM1Q2M3G4 852 aaPredicted RBP16.34■□□□□ 0.21
CUX1-215ENST00000556210 GPATCH4Q5T3I0 446 aaKnown RBP16.34■□□□□ 0.21
CUX1-215ENST00000556210 UBLCP1Q8WVY7 318 aaPredicted RBP16.34■□□□□ 0.21
CUX1-215ENST00000556210 PPM1EQ8WY54 764 aa16.34■□□□□ 0.21
CUX1-215ENST00000556210 SHISA4Q96DD7 197 aa16.34■□□□□ 0.21
CUX1-215ENST00000556210 PNKPQ96T60 521 aa16.34■□□□□ 0.21
CUX1-215ENST00000556210 DNAJC5Q9H3Z4 198 aa16.34■□□□□ 0.21
CUX1-215ENST00000556210 LIMA1Q9UHB6 759 aaKnown RBP16.34■□□□□ 0.21
CUX1-215ENST00000556210 COL4A3BPQ9Y5P4 624 aa16.34■□□□□ 0.21
CUX1-215ENST00000556210 ZRANB2O95218 330 aaKnown RBP eCLIP16.34■□□□□ 0.21
CUX1-215ENST00000556210 FUT2Q10981 343 aa16.34■□□□□ 0.21
CUX1-215ENST00000556210 MRC1P22897 1456 aa16.33■□□□□ 0.21
CUX1-215ENST00000556210 F5H6K3 240 aa16.33■□□□□ 0.21
CUX1-215ENST00000556210 KLRC3Q07444 240 aa16.33■□□□□ 0.21
CUX1-215ENST00000556210 PAXIP1Q6ZW49 1069 aaPredicted RBP16.33■□□□□ 0.21
CUX1-215ENST00000556210 SH3GLB2Q9NR46 395 aa16.33■□□□□ 0.21
CUX1-215ENST00000556210 HGSO14964 777 aaPredicted RBP16.33■□□□□ 0.2
CUX1-215ENST00000556210 ZBTB5O15062 677 aa16.33■□□□□ 0.2
CUX1-215ENST00000556210 ERLIN2O94905 339 aa16.33■□□□□ 0.2
CUX1-215ENST00000556210 ACTN1P12814 892 aa16.33■□□□□ 0.2
CUX1-215ENST00000556210 RPL13P26373 211 aaKnown RBP16.33■□□□□ 0.2
CUX1-215ENST00000556210 PHLDB2Q86SQ0 1253 aa16.33■□□□□ 0.2
CUX1-215ENST00000556210 MS4A14Q96JA4 679 aa16.33■□□□□ 0.2
CUX1-215ENST00000556210 TSGA10Q9BZW7 698 aa16.33■□□□□ 0.2
CUX1-215ENST00000556210 DPH5Q9H2P9 285 aa16.33■□□□□ 0.2
CUX1-215ENST00000556210 CETN1Q12798 172 aa16.33■□□□□ 0.2
CUX1-215ENST00000556210 COASYQ13057 564 aa16.33■□□□□ 0.2
CUX1-215ENST00000556210 KRT27Q7Z3Y8 459 aa16.33■□□□□ 0.2
CUX1-215ENST00000556210 FRMD4BQ9Y2L6 1034 aa16.33■□□□□ 0.2
CUX1-215ENST00000556210 CDR1P51861 262 aa16.32■□□□□ 0.2
CUX1-215ENST00000556210 GFPT2O94808 682 aa16.32■□□□□ 0.2
CUX1-215ENST00000556210 RPS6KA1Q15418 735 aa16.32■□□□□ 0.2
CUX1-215ENST00000556210 EXOC3L4Q17RC7 722 aa16.32■□□□□ 0.2
CUX1-215ENST00000556210 ODR4Q5SWX8 454 aa16.32■□□□□ 0.2
CUX1-215ENST00000556210 UNC13DQ70J99 1090 aa16.32■□□□□ 0.2
CUX1-215ENST00000556210 SFR1Q86XK3 245 aa16.32■□□□□ 0.2
CUX1-215ENST00000556210 AP1M1Q9BXS5 423 aa16.32■□□□□ 0.2
CUX1-215ENST00000556210 RTFDC1Q9BY42 306 aaPredicted RBP16.32■□□□□ 0.2
CUX1-215ENST00000556210 JMJD4Q9H9V9 463 aa16.32■□□□□ 0.2
CUX1-215ENST00000556210 MED4Q9NPJ6 270 aa16.32■□□□□ 0.2
CUX1-215ENST00000556210 PALM3A6NDB9 673 aaPredicted RBP16.32■□□□□ 0.2
CUX1-215ENST00000556210 PEX26Q7Z412 305 aa16.32■□□□□ 0.2
CUX1-215ENST00000556210 DAAM2Q86T65 1068 aa16.32■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms